RNA–Protein interactions for RNA: ENST00000248139.7

RAB40C-201, Transcript of RAB40C, member RAS oncogene family, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RAB40C, Length 2,699 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-201ENST00000248139 KRTAP10-8P60410 259 aa13.34□□□□□ -0.27
RAB40C-201ENST00000248139 RYR1P21817 5038 aa13.33□□□□□ -0.28
RAB40C-201ENST00000248139 KIAA1109Q2LD37 5005 aa13.32□□□□□ -0.28
RAB40C-201ENST00000248139 H1FX-AS1Q4G0G2 97 aa13.26□□□□□ -0.29
RAB40C-201ENST00000248139 LPAP08519 4548 aa13.23□□□□□ -0.29
RAB40C-201ENST00000248139 CSAG1Q6PB30 78 aa13.2□□□□□ -0.3
RAB40C-201ENST00000248139 XP32Q5T750 250 aa13.19□□□□□ -0.3
RAB40C-201ENST00000248139 RPL37P61927 97 aaKnown RBP13.16□□□□□ -0.3
RAB40C-201ENST00000248139 KRTAP3-3Q9BYR6 98 aa13.12□□□□□ -0.31
RAB40C-201ENST00000248139 LRP2P98164 4655 aa13.07□□□□□ -0.32
RAB40C-201ENST00000248139 EPPK1P58107 5090 aaKnown RBP13.02□□□□□ -0.32
RAB40C-201ENST00000248139 MT1HL1P0DM35 61 aa13□□□□□ -0.33
RAB40C-201ENST00000248139 KRTAP10-6P60371 365 aaPredicted RBP12.99□□□□□ -0.33
RAB40C-201ENST00000248139 LINC01554Q52M75 96 aa12.99□□□□□ -0.33
RAB40C-201ENST00000248139 KRTAP13-4Q3LI77 160 aa12.96□□□□□ -0.34
RAB40C-201ENST00000248139 S4R3F8 94 aa12.94□□□□□ -0.34
RAB40C-201ENST00000248139 CRIPTQ9P021 101 aa12.93□□□□□ -0.34
RAB40C-201ENST00000248139 A0A0D9SG42 100 aa12.92□□□□□ -0.34
RAB40C-201ENST00000248139 ABCA13Q86UQ4 5058 aa12.91□□□□□ -0.34
RAB40C-201ENST00000248139 KRTAP3-2Q9BYR7 98 aa12.9□□□□□ -0.34
RAB40C-201ENST00000248139 P0C880 135 aa12.85□□□□□ -0.35
RAB40C-201ENST00000248139 K7ERS5 55 aa12.78□□□□□ -0.36
RAB40C-201ENST00000248139 KRTAP25-1Q3LHN0 102 aa12.73□□□□□ -0.37
RAB40C-201ENST00000248139 KRTAP4-5Q9BYR2 181 aa12.65□□□□□ -0.38
RAB40C-201ENST00000248139 ROMO1P60602 79 aa12.56□□□□□ -0.4
RAB40C-201ENST00000248139 TPRXLQ17RH7 258 aa12.56□□□□□ -0.4
RAB40C-201ENST00000248139 KRTAP12-2P59991 146 aa12.5□□□□□ -0.41
RAB40C-201ENST00000248139 SPINT4Q6UDR6 99 aa12.43□□□□□ -0.42
RAB40C-201ENST00000248139 C10orf95Q9H7T3 257 aa12.39□□□□□ -0.43
RAB40C-201ENST00000248139 MUC17Q685J3 4493 aa12.35□□□□□ -0.43
RAB40C-201ENST00000248139 KRTAP12-1P59990 96 aa12.34□□□□□ -0.43
RAB40C-201ENST00000248139 HERC2O95714 4834 aa12.25□□□□□ -0.45
RAB40C-201ENST00000248139 KRTAP4-1Q9BYQ7 146 aa12.22□□□□□ -0.45
RAB40C-201ENST00000248139 MUC2Q02817 5179 aa12.21□□□□□ -0.45
RAB40C-201ENST00000248139 M0QZ58 72 aa12.16□□□□□ -0.46
RAB40C-201ENST00000248139 LORP23490 312 aaPredicted RBP12.1□□□□□ -0.47
RAB40C-201ENST00000248139 SEC61BP60468 96 aaKnown RBP12.09□□□□□ -0.47
RAB40C-201ENST00000248139 J3QL48 77 aa12.09□□□□□ -0.47
RAB40C-201ENST00000248139 R4GN34 69 aa12.05□□□□□ -0.48
RAB40C-201ENST00000248139 KRTAP19-2Q3LHN2 52 aa11.85□□□□□ -0.51
RAB40C-201ENST00000248139 H3BS24 57 aa11.85□□□□□ -0.51
RAB40C-201ENST00000248139 HERC1Q15751 4861 aa11.82□□□□□ -0.52
RAB40C-201ENST00000248139 BIRC6Q9NR09 4857 aa11.7□□□□□ -0.54
RAB40C-201ENST00000248139 PCLOQ9Y6V0 5065 aa11.66□□□□□ -0.54
RAB40C-201ENST00000248139 FLGP20930 4061 aaPredicted RBP11.63□□□□□ -0.55
RAB40C-201ENST00000248139 FAT4Q6V0I7 4981 aa11.62□□□□□ -0.55
RAB40C-201ENST00000248139 KRTAP15-1Q3LI76 137 aa11.6□□□□□ -0.55
RAB40C-201ENST00000248139 HMCN2Q8NDA2 5059 aa11.53□□□□□ -0.56
RAB40C-201ENST00000248139 CAMK2N1Q7Z7J9 78 aa11.46□□□□□ -0.57
RAB40C-201ENST00000248139 NDUFAF8A1L188 74 aa11.42□□□□□ -0.58
RAB40C-201ENST00000248139 RNF213Q63HN8 5207 aa11.34□□□□□ -0.59
RAB40C-201ENST00000248139 UBR4Q5T4S7 5183 aa11.2□□□□□ -0.62
RAB40C-201ENST00000248139 LCE2CQ5TA81 110 aa11.19□□□□□ -0.62
RAB40C-201ENST00000248139 PLAC4Q8WY50 150 aa11.16□□□□□ -0.62
RAB40C-201ENST00000248139 M0R2T5 61 aa11.02□□□□□ -0.65
RAB40C-201ENST00000248139 PP632Q6XCG6 107 aa10.96□□□□□ -0.65
RAB40C-201ENST00000248139 TNP1P09430 55 aa10.92□□□□□ -0.66
RAB40C-201ENST00000248139 KRTAP19-1Q8IUB9 90 aa10.92□□□□□ -0.66
RAB40C-201ENST00000248139 MT1HP80294 61 aa10.88□□□□□ -0.67
RAB40C-201ENST00000248139 SPRR2GQ9BYE4 73 aa10.84□□□□□ -0.67
RAB40C-201ENST00000248139 MT1FP04733 61 aa10.76□□□□□ -0.69
RAB40C-201ENST00000248139 KRTAP10-10P60014 251 aa10.74□□□□□ -0.69
RAB40C-201ENST00000248139 MT2AP02795 61 aa10.71□□□□□ -0.69
RAB40C-201ENST00000248139 KRTAP9-8Q9BYQ0 159 aa10.63□□□□□ -0.71
RAB40C-201ENST00000248139 LUZP6Q538Z0 58 aa10.56□□□□□ -0.72
RAB40C-201ENST00000248139 KRTAP23-1A1A580 65 aa10.51□□□□□ -0.73
RAB40C-201ENST00000248139 LCE3AQ5TA76 89 aa10.5□□□□□ -0.73
RAB40C-201ENST00000248139 MT1BP07438 61 aa10.34□□□□□ -0.75
RAB40C-201ENST00000248139 KRTAP19-8Q3LI54 63 aa10.33□□□□□ -0.76
RAB40C-201ENST00000248139 KRTAP10-5P60370 271 aa10.28□□□□□ -0.76
RAB40C-201ENST00000248139 SPRR5A0A1B0GTR4 108 aa10.27□□□□□ -0.77
RAB40C-201ENST00000248139 MT1XP80297 61 aa10.26□□□□□ -0.77
RAB40C-201ENST00000248139 KRTAP9-3Q9BYQ3 159 aa10.15□□□□□ -0.78
RAB40C-201ENST00000248139 USH2AO75445 5202 aa10.15□□□□□ -0.78
RAB40C-201ENST00000248139 KRTAP10-7P60409 375 aaPredicted RBP10.07□□□□□ -0.8
RAB40C-201ENST00000248139 KRTAP8-1Q8IUC2 63 aa10.06□□□□□ -0.8
RAB40C-201ENST00000248139 KRTAP10-12P60413 245 aa10.01□□□□□ -0.81
RAB40C-201ENST00000248139 KMT2DO14686 5537 aa9.97□□□□□ -0.81
RAB40C-201ENST00000248139 KRTAP12-3P60328 96 aa9.92□□□□□ -0.82
RAB40C-201ENST00000248139 A0A0A0MQY5 61 aa9.91□□□□□ -0.82
RAB40C-201ENST00000248139 LCE2BO14633 110 aa9.85□□□□□ -0.83
RAB40C-201ENST00000248139 PRO2289Q9P1D8 64 aa9.72□□□□□ -0.85
RAB40C-201ENST00000248139 KRTAP19-5Q3LI72 72 aa9.6□□□□□ -0.87
RAB40C-201ENST00000248139 KRTAP4-8A0A0G2JLE6 195 aa9.56□□□□□ -0.88
RAB40C-201ENST00000248139 LCE2AQ5TA79 106 aaPredicted RBP9.56□□□□□ -0.88
RAB40C-201ENST00000248139 KRTAP4-8Q9BYQ9 185 aa9.56□□□□□ -0.88
RAB40C-201ENST00000248139 LCE3CQ5T5A8 94 aa9.31□□□□□ -0.92
RAB40C-201ENST00000248139 FSIP2Q5CZC0 6907 aa9.3□□□□□ -0.92
RAB40C-201ENST00000248139 SSPOA2VEC9 5147 aa9.19□□□□□ -0.94
RAB40C-201ENST00000248139 KRTAP4-7Q9BYR0 210 aa9.18□□□□□ -0.94
RAB40C-201ENST00000248139 KRTAP19-7Q3SYF9 63 aa9.15□□□□□ -0.94
RAB40C-201ENST00000248139 KRTAP9-6A8MVA2 160 aa9.13□□□□□ -0.95
RAB40C-201ENST00000248139 INE1O15225 51 aa8.89□□□□□ -0.99
RAB40C-201ENST00000248139 MT1EP04732 61 aa8.86□□□□□ -0.99
RAB40C-201ENST00000248139 MT1LQ93083 61 aa8.85□□□□□ -0.99
RAB40C-201ENST00000248139 FCGBPQ9Y6R7 5405 aaPredicted RBP8.79□□□□□ -1
RAB40C-201ENST00000248139 MUC12Q9UKN1 5478 aa8.76□□□□□ -1.01
RAB40C-201ENST00000248139 KRTAP19-6Q3LI70 58 aa8.67□□□□□ -1.02
RAB40C-201ENST00000248139 KRTAP4-3Q9BYR4 195 aa8.61□□□□□ -1.03
RAB40C-201ENST00000248139 KRTAP2-3P0C7H8 128 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms