RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 KMT2CQ8NEZ4 4911 aaKnown RBP9.64□□□□□ -0.87
CPSF3-201ENST00000238112 XP32Q5T750 250 aa9.64□□□□□ -0.87
CPSF3-201ENST00000238112 KRTAP3-3Q9BYR6 98 aa9.61□□□□□ -0.87
CPSF3-201ENST00000238112 S4R3F8 94 aa9.57□□□□□ -0.88
CPSF3-201ENST00000238112 KRTAP10-6P60371 365 aaPredicted RBP9.55□□□□□ -0.88
CPSF3-201ENST00000238112 DMBT1Q9UGM3 2413 aaPredicted RBP9.55□□□□□ -0.88
CPSF3-201ENST00000238112 HSPG2P98160 4391 aa9.54□□□□□ -0.88
CPSF3-201ENST00000238112 KRTAP25-1Q3LHN0 102 aa9.54□□□□□ -0.88
CPSF3-201ENST00000238112 KRTAP3-2Q9BYR7 98 aa9.48□□□□□ -0.89
CPSF3-201ENST00000238112 KRTAP13-4Q3LI77 160 aa9.45□□□□□ -0.9
CPSF3-201ENST00000238112 A0A0D9SG42 100 aa9.44□□□□□ -0.9
CPSF3-201ENST00000238112 MYCBP2O75592 4640 aa9.43□□□□□ -0.9
CPSF3-201ENST00000238112 RYR1P21817 5038 aa9.41□□□□□ -0.9
CPSF3-201ENST00000238112 MT1HL1P0DM35 61 aa9.4□□□□□ -0.9
CPSF3-201ENST00000238112 ROMO1P60602 79 aa9.4□□□□□ -0.9
CPSF3-201ENST00000238112 KRTAP17-1Q9BYP8 105 aa9.4□□□□□ -0.9
CPSF3-201ENST00000238112 CRIPTQ9P021 101 aa9.38□□□□□ -0.91
CPSF3-201ENST00000238112 P0C880 135 aa9.37□□□□□ -0.91
CPSF3-201ENST00000238112 RYR3Q15413 4870 aa9.3□□□□□ -0.92
CPSF3-201ENST00000238112 TPRXLQ17RH7 258 aa9.27□□□□□ -0.92
CPSF3-201ENST00000238112 KIAA1109Q2LD37 5005 aa9.23□□□□□ -0.93
CPSF3-201ENST00000238112 LPAP08519 4548 aa9.18□□□□□ -0.94
CPSF3-201ENST00000238112 KRTAP12-2P59991 146 aa9.17□□□□□ -0.94
CPSF3-201ENST00000238112 LRP2P98164 4655 aa9.14□□□□□ -0.95
CPSF3-201ENST00000238112 SPINT4Q6UDR6 99 aa9.13□□□□□ -0.95
CPSF3-201ENST00000238112 M0QZ58 72 aa9.11□□□□□ -0.95
CPSF3-201ENST00000238112 KRTAP12-1P59990 96 aa9.11□□□□□ -0.95
CPSF3-201ENST00000238112 C10orf95Q9H7T3 257 aa9.04□□□□□ -0.96
CPSF3-201ENST00000238112 EPPK1P58107 5090 aaKnown RBP8.95□□□□□ -0.98
CPSF3-201ENST00000238112 SEC61BP60468 96 aaKnown RBP8.94□□□□□ -0.98
CPSF3-201ENST00000238112 H3BS24 57 aa8.93□□□□□ -0.98
CPSF3-201ENST00000238112 ABCA13Q86UQ4 5058 aa8.93□□□□□ -0.98
CPSF3-201ENST00000238112 KRTAP4-5Q9BYR2 181 aa8.93□□□□□ -0.98
CPSF3-201ENST00000238112 R4GN34 69 aa8.9□□□□□ -0.98
CPSF3-201ENST00000238112 J3QL48 77 aa8.76□□□□□ -1.01
CPSF3-201ENST00000238112 KRTAP4-1Q9BYQ7 146 aa8.75□□□□□ -1.01
CPSF3-201ENST00000238112 MUC17Q685J3 4493 aa8.75□□□□□ -1.01
CPSF3-201ENST00000238112 LORP23490 312 aaPredicted RBP8.71□□□□□ -1.02
CPSF3-201ENST00000238112 KRTAP15-1Q3LI76 137 aa8.68□□□□□ -1.02
CPSF3-201ENST00000238112 KRTAP19-2Q3LHN2 52 aa8.59□□□□□ -1.03
CPSF3-201ENST00000238112 HERC2O95714 4834 aa8.51□□□□□ -1.05
CPSF3-201ENST00000238112 NDUFAF8A1L188 74 aa8.5□□□□□ -1.05
CPSF3-201ENST00000238112 CAMK2N1Q7Z7J9 78 aa8.46□□□□□ -1.05
CPSF3-201ENST00000238112 FLGP20930 4061 aaPredicted RBP8.34□□□□□ -1.07
CPSF3-201ENST00000238112 PLAC4Q8WY50 150 aa8.34□□□□□ -1.08
CPSF3-201ENST00000238112 MUC2Q02817 5179 aa8.33□□□□□ -1.08
CPSF3-201ENST00000238112 PP632Q6XCG6 107 aa8.33□□□□□ -1.08
CPSF3-201ENST00000238112 BIRC6Q9NR09 4857 aa8.29□□□□□ -1.08
CPSF3-201ENST00000238112 TNP1P09430 55 aa8.14□□□□□ -1.11
CPSF3-201ENST00000238112 HERC1Q15751 4861 aa8.11□□□□□ -1.11
CPSF3-201ENST00000238112 PCLOQ9Y6V0 5065 aa8.08□□□□□ -1.12
CPSF3-201ENST00000238112 LCE2CQ5TA81 110 aa8.06□□□□□ -1.12
CPSF3-201ENST00000238112 HMCN2Q8NDA2 5059 aa8.06□□□□□ -1.12
CPSF3-201ENST00000238112 KRTAP23-1A1A580 65 aa8.03□□□□□ -1.12
CPSF3-201ENST00000238112 LUZP6Q538Z0 58 aa8□□□□□ -1.13
CPSF3-201ENST00000238112 SPRR2GQ9BYE4 73 aa7.99□□□□□ -1.13
CPSF3-201ENST00000238112 M0R2T5 61 aa7.98□□□□□ -1.13
CPSF3-201ENST00000238112 KRTAP19-1Q8IUB9 90 aa7.93□□□□□ -1.14
CPSF3-201ENST00000238112 FAT4Q6V0I7 4981 aa7.93□□□□□ -1.14
CPSF3-201ENST00000238112 MT1HP80294 61 aa7.87□□□□□ -1.15
CPSF3-201ENST00000238112 KRTAP10-10P60014 251 aa7.79□□□□□ -1.16
CPSF3-201ENST00000238112 MT1FP04733 61 aa7.77□□□□□ -1.17
CPSF3-201ENST00000238112 MT2AP02795 61 aa7.76□□□□□ -1.17
CPSF3-201ENST00000238112 SPRR5A0A1B0GTR4 108 aa7.72□□□□□ -1.17
CPSF3-201ENST00000238112 RNF213Q63HN8 5207 aa7.72□□□□□ -1.17
CPSF3-201ENST00000238112 KRTAP9-8Q9BYQ0 159 aa7.68□□□□□ -1.18
CPSF3-201ENST00000238112 UBR4Q5T4S7 5183 aa7.67□□□□□ -1.18
CPSF3-201ENST00000238112 LCE3AQ5TA76 89 aa7.67□□□□□ -1.18
CPSF3-201ENST00000238112 KRTAP19-8Q3LI54 63 aa7.62□□□□□ -1.19
CPSF3-201ENST00000238112 A0A0A0MQY5 61 aa7.6□□□□□ -1.19
CPSF3-201ENST00000238112 MT1BP07438 61 aa7.51□□□□□ -1.21
CPSF3-201ENST00000238112 KRTAP10-5P60370 271 aa7.49□□□□□ -1.21
CPSF3-201ENST00000238112 MT1XP80297 61 aa7.47□□□□□ -1.21
CPSF3-201ENST00000238112 KRTAP8-1Q8IUC2 63 aa7.47□□□□□ -1.21
CPSF3-201ENST00000238112 KRTAP10-12P60413 245 aa7.39□□□□□ -1.23
CPSF3-201ENST00000238112 KRTAP9-3Q9BYQ3 159 aa7.36□□□□□ -1.23
CPSF3-201ENST00000238112 KRTAP12-3P60328 96 aa7.32□□□□□ -1.24
CPSF3-201ENST00000238112 LCE2DQ5TA82 110 aaPredicted RBP7.28□□□□□ -1.24
CPSF3-201ENST00000238112 KRTAP10-7P60409 375 aaPredicted RBP7.27□□□□□ -1.25
CPSF3-201ENST00000238112 PRO2289Q9P1D8 64 aa7.26□□□□□ -1.25
CPSF3-201ENST00000238112 LCE2BO14633 110 aa7.05□□□□□ -1.28
CPSF3-201ENST00000238112 KRTAP19-5Q3LI72 72 aa6.99□□□□□ -1.29
CPSF3-201ENST00000238112 LCE3CQ5T5A8 94 aa6.89□□□□□ -1.31
CPSF3-201ENST00000238112 LCE2AQ5TA79 106 aaPredicted RBP6.88□□□□□ -1.31
CPSF3-201ENST00000238112 INE1O15225 51 aa6.87□□□□□ -1.31
CPSF3-201ENST00000238112 USH2AO75445 5202 aa6.84□□□□□ -1.31
CPSF3-201ENST00000238112 KRTAP4-8A0A0G2JLE6 195 aa6.79□□□□□ -1.32
CPSF3-201ENST00000238112 KRTAP4-8Q9BYQ9 185 aa6.79□□□□□ -1.32
CPSF3-201ENST00000238112 KMT2DO14686 5537 aa6.76□□□□□ -1.33
CPSF3-201ENST00000238112 KRTAP19-7Q3SYF9 63 aa6.65□□□□□ -1.34
CPSF3-201ENST00000238112 KRTAP9-6A8MVA2 160 aa6.6□□□□□ -1.35
CPSF3-201ENST00000238112 KRTAP19-4Q3LI73 84 aa6.53□□□□□ -1.36
CPSF3-201ENST00000238112 KRTAP4-7Q9BYR0 210 aa6.51□□□□□ -1.37
CPSF3-201ENST00000238112 MT1LQ93083 61 aa6.48□□□□□ -1.37
CPSF3-201ENST00000238112 MT1EP04732 61 aa6.47□□□□□ -1.37
CPSF3-201ENST00000238112 SSPOA2VEC9 5147 aa6.42□□□□□ -1.38
CPSF3-201ENST00000238112 KRTAP2-3P0C7H8 128 aa6.4□□□□□ -1.38
CPSF3-201ENST00000238112 KRTAP2-4Q9BYR9 128 aa6.4□□□□□ -1.38
CPSF3-201ENST00000238112 KRTAP2-1Q9BYU5 128 aa6.4□□□□□ -1.38
CPSF3-201ENST00000238112 KRTAP19-6Q3LI70 58 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms