RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 FBN2P35556 2912 aa1.98□□□□□ -2.09
SCN1A-221ENST00000641996 WDFY4Q6ZS81 3184 aa1.98□□□□□ -2.09
SCN1A-221ENST00000641996 KRTAP24-1Q3LI83 254 aa1.98□□□□□ -2.09
SCN1A-221ENST00000641996 FBN1P35555 2871 aaKnown RBP1.98□□□□□ -2.09
SCN1A-221ENST00000641996 KRTAP29-1A8MX34 341 aaPredicted RBP1.97□□□□□ -2.09
SCN1A-221ENST00000641996 A0A1B0GUV1 79 aa1.97□□□□□ -2.09
SCN1A-221ENST00000641996 LINC01556Q5JQF7 62 aa1.97□□□□□ -2.09
SCN1A-221ENST00000641996 MAPK1IP1LQ8NDC0 245 aa1.96□□□□□ -2.1
SCN1A-221ENST00000641996 HTTP42858 3142 aa1.95□□□□□ -2.1
SCN1A-221ENST00000641996 C9orf92A6NGG3 77 aa1.95□□□□□ -2.1
SCN1A-221ENST00000641996 PCNTO95613 3336 aa1.95□□□□□ -2.1
SCN1A-221ENST00000641996 S4R3F8 94 aa1.95□□□□□ -2.1
SCN1A-221ENST00000641996 RANBP2P49792 3224 aaKnown RBP1.95□□□□□ -2.1
SCN1A-221ENST00000641996 Q6ZSA8 131 aa1.94□□□□□ -2.1
SCN1A-221ENST00000641996 AKAP9Q99996 3911 aa1.94□□□□□ -2.1
SCN1A-221ENST00000641996 ANAPC11Q9NYG5 84 aa1.93□□□□□ -2.1
SCN1A-221ENST00000641996 CFAP47Q6ZTR5 3102 aa1.93□□□□□ -2.1
SCN1A-221ENST00000641996 BOD1L1Q8NFC6 3051 aa1.93□□□□□ -2.1
SCN1A-221ENST00000641996 INE1O15225 51 aa1.92□□□□□ -2.1
SCN1A-221ENST00000641996 GOLGB1Q14789 3259 aaKnown RBP1.92□□□□□ -2.1
SCN1A-221ENST00000641996 SPRR1BP22528 89 aa1.91□□□□□ -2.1
SCN1A-221ENST00000641996 LYSTQ99698 3801 aa1.91□□□□□ -2.1
SCN1A-221ENST00000641996 KRTAP10-8P60410 259 aa1.91□□□□□ -2.1
SCN1A-221ENST00000641996 VPS13AQ96RL7 3174 aa1.9□□□□□ -2.1
SCN1A-221ENST00000641996 COX6B2Q6YFQ2 88 aa1.9□□□□□ -2.11
SCN1A-221ENST00000641996 Q6ZRN7 208 aaPredicted RBP1.89□□□□□ -2.11
SCN1A-221ENST00000641996 BSNQ9UPA5 3926 aa1.89□□□□□ -2.11
SCN1A-221ENST00000641996 J3QKU1 62 aa1.86□□□□□ -2.11
SCN1A-221ENST00000641996 SPRR1AP35321 89 aa1.86□□□□□ -2.11
SCN1A-221ENST00000641996 U3KQA8 63 aa1.85□□□□□ -2.11
SCN1A-221ENST00000641996 KRTAP7-1Q8IUC3 87 aa1.84□□□□□ -2.11
SCN1A-221ENST00000641996 LCE2CQ5TA81 110 aa1.82□□□□□ -2.12
SCN1A-221ENST00000641996 H3BNG1 76 aa1.82□□□□□ -2.12
SCN1A-221ENST00000641996 M0QZ58 72 aa1.81□□□□□ -2.12
SCN1A-221ENST00000641996 COL6A3P12111 3177 aa1.81□□□□□ -2.12
SCN1A-221ENST00000641996 KRTAP3-1Q9BYR8 98 aa1.81□□□□□ -2.12
SCN1A-221ENST00000641996 UTRNP46939 3433 aa1.8□□□□□ -2.12
SCN1A-221ENST00000641996 KRTAP17-1Q9BYP8 105 aa1.8□□□□□ -2.12
SCN1A-221ENST00000641996 ANK2Q01484 3957 aa1.8□□□□□ -2.12
SCN1A-221ENST00000641996 XP32Q5T750 250 aa1.79□□□□□ -2.12
SCN1A-221ENST00000641996 CSMD3Q7Z407 3707 aa1.78□□□□□ -2.12
SCN1A-221ENST00000641996 TRRAPQ9Y4A5 3859 aa1.78□□□□□ -2.12
SCN1A-221ENST00000641996 CMYA5Q8N3K9 4069 aa1.78□□□□□ -2.12
SCN1A-221ENST00000641996 ZNF469Q96JG9 3925 aaPredicted RBP1.78□□□□□ -2.13
SCN1A-221ENST00000641996 KRTAP12-2P59991 146 aa1.77□□□□□ -2.13
SCN1A-221ENST00000641996 DNAH3Q8TD57 4116 aa1.77□□□□□ -2.13
SCN1A-221ENST00000641996 DMDP11532 3685 aa1.77□□□□□ -2.13
SCN1A-221ENST00000641996 SPTBN5Q9NRC6 3674 aaKnown RBP1.77□□□□□ -2.13
SCN1A-221ENST00000641996 ZFHX4Q86UP3 3567 aa1.75□□□□□ -2.13
SCN1A-221ENST00000641996 VCANP13611 3396 aa1.75□□□□□ -2.13
SCN1A-221ENST00000641996 SMG1Q96Q15 3661 aaKnown RBP1.74□□□□□ -2.13
SCN1A-221ENST00000641996 VPS13CQ709C8 3753 aa1.74□□□□□ -2.13
SCN1A-221ENST00000641996 XIRP2A4UGR9 3374 aa1.72□□□□□ -2.13
SCN1A-221ENST00000641996 LCE2BO14633 110 aa1.72□□□□□ -2.13
SCN1A-221ENST00000641996 LCE2DQ5TA82 110 aaPredicted RBP1.72□□□□□ -2.13
SCN1A-221ENST00000641996 RYR1P21817 5038 aa1.71□□□□□ -2.14
SCN1A-221ENST00000641996 KRTAP13-2Q52LG2 175 aa1.71□□□□□ -2.14
SCN1A-221ENST00000641996 LAMA5O15230 3695 aa1.71□□□□□ -2.14
SCN1A-221ENST00000641996 PCLOQ9Y6V0 5065 aa1.7□□□□□ -2.14
SCN1A-221ENST00000641996 USP34Q70CQ2 3546 aa1.7□□□□□ -2.14
SCN1A-221ENST00000641996 DNHD1Q96M86 4753 aa1.7□□□□□ -2.14
SCN1A-221ENST00000641996 MKI67P46013 3256 aaKnown RBP1.7□□□□□ -2.14
SCN1A-221ENST00000641996 KRTAP13-4Q3LI77 160 aa1.69□□□□□ -2.14
SCN1A-221ENST00000641996 LCE2AQ5TA79 106 aaPredicted RBP1.69□□□□□ -2.14
SCN1A-221ENST00000641996 KRTAP12-1P59990 96 aa1.69□□□□□ -2.14
SCN1A-221ENST00000641996 DNAH14Q0VDD8 3507 aa1.68□□□□□ -2.14
SCN1A-221ENST00000641996 SMR3AQ99954 134 aa1.68□□□□□ -2.14
SCN1A-221ENST00000641996 TNP1P09430 55 aa1.68□□□□□ -2.14
SCN1A-221ENST00000641996 LOC400499M0QZD8 3231 aa1.67□□□□□ -2.14
SCN1A-221ENST00000641996 UNC80Q8N2C7 3258 aa1.66□□□□□ -2.14
SCN1A-221ENST00000641996 DNAH7Q8WXX0 4024 aa1.65□□□□□ -2.15
SCN1A-221ENST00000641996 Q5VSD8 79 aa1.65□□□□□ -2.15
SCN1A-221ENST00000641996 KRTAP10-9P60411 292 aa1.65□□□□□ -2.15
SCN1A-221ENST00000641996 KRTAP13-3Q3SY46 172 aa1.65□□□□□ -2.15
SCN1A-221ENST00000641996 HECTD4Q9Y4D8 3996 aa1.65□□□□□ -2.15
SCN1A-221ENST00000641996 UBR4Q5T4S7 5183 aa1.64□□□□□ -2.15
SCN1A-221ENST00000641996 VPS13BQ7Z7G8 4022 aa1.64□□□□□ -2.15
SCN1A-221ENST00000641996 SPENQ96T58 3664 aaKnown RBP1.63□□□□□ -2.15
SCN1A-221ENST00000641996 HYDINQ4G0P3 5121 aa1.63□□□□□ -2.15
SCN1A-221ENST00000641996 CELSR3Q9NYQ7 3312 aa1.62□□□□□ -2.15
SCN1A-221ENST00000641996 FRAS1Q86XX4 4008 aa1.62□□□□□ -2.15
SCN1A-221ENST00000641996 KRTAP21-3Q3LHN1 58 aa1.62□□□□□ -2.15
SCN1A-221ENST00000641996 EYSQ5T1H1 3165 aa1.61□□□□□ -2.15
SCN1A-221ENST00000641996 RYR3Q15413 4870 aa1.61□□□□□ -2.15
SCN1A-221ENST00000641996 BRCA2P51587 3418 aa1.61□□□□□ -2.15
SCN1A-221ENST00000641996 KRTAP19-4Q3LI73 84 aa1.61□□□□□ -2.15
SCN1A-221ENST00000641996 WDFY3Q8IZQ1 3526 aa1.6□□□□□ -2.15
SCN1A-221ENST00000641996 MYO15AQ9UKN7 3530 aa1.59□□□□□ -2.15
SCN1A-221ENST00000641996 RYR2Q92736 4967 aa1.59□□□□□ -2.15
SCN1A-221ENST00000641996 SZT2Q5T011 3432 aa1.59□□□□□ -2.15
SCN1A-221ENST00000641996 M0R2T5 61 aa1.58□□□□□ -2.16
SCN1A-221ENST00000641996 LAMA3Q16787 3333 aa1.58□□□□□ -2.16
SCN1A-221ENST00000641996 LORP23490 312 aaPredicted RBP1.58□□□□□ -2.16
SCN1A-221ENST00000641996 KMT2AQ03164 3969 aa1.58□□□□□ -2.16
SCN1A-221ENST00000641996 ASPMQ8IZT6 3477 aa1.58□□□□□ -2.16
SCN1A-221ENST00000641996 SPEGQ15772 3267 aa1.57□□□□□ -2.16
SCN1A-221ENST00000641996 SMR3BP02814 79 aaPredicted RBP1.56□□□□□ -2.16
SCN1A-221ENST00000641996 CDH23Q9H251 3354 aa1.56□□□□□ -2.16
SCN1A-221ENST00000641996 KRTAP10-6P60371 365 aaPredicted RBP1.55□□□□□ -2.16
SCN1A-221ENST00000641996 KRTAP1-5Q9BYS1 174 aa1.55□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms