RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 LINC01558Q9Y6Z2 57 aa1.79□□□□□ -2.12
SCN1A-219ENST00000641575 FAM168BA1KXE4 195 aa1.79□□□□□ -2.12
SCN1A-219ENST00000641575 KCNQ1DNQ9H478 68 aa1.79□□□□□ -2.12
SCN1A-219ENST00000641575 WDFY4Q6ZS81 3184 aa1.78□□□□□ -2.12
SCN1A-219ENST00000641575 Q8N377 158 aa1.78□□□□□ -2.12
SCN1A-219ENST00000641575 C19orf73Q9NVV2 129 aa1.78□□□□□ -2.12
SCN1A-219ENST00000641575 Q8N9P0 234 aaPredicted RBP1.78□□□□□ -2.12
SCN1A-219ENST00000641575 UNC80Q8N2C7 3258 aa1.78□□□□□ -2.12
SCN1A-219ENST00000641575 CELSR3Q9NYQ7 3312 aa1.78□□□□□ -2.12
SCN1A-219ENST00000641575 RPS29P62273 56 aaKnown RBP1.78□□□□□ -2.12
SCN1A-219ENST00000641575 KRTAP17-1Q9BYP8 105 aa1.78□□□□□ -2.12
SCN1A-219ENST00000641575 Q6ZR54 194 aa1.77□□□□□ -2.13
SCN1A-219ENST00000641575 CMYA5Q8N3K9 4069 aa1.77□□□□□ -2.13
SCN1A-219ENST00000641575 RANBP2P49792 3224 aaKnown RBP1.77□□□□□ -2.13
SCN1A-219ENST00000641575 KRTAP10-9P60411 292 aa1.77□□□□□ -2.13
SCN1A-219ENST00000641575 A0A1W2PNN7 141 aa1.77□□□□□ -2.13
SCN1A-219ENST00000641575 FBN3Q75N90 2809 aa1.76□□□□□ -2.13
SCN1A-219ENST00000641575 MKI67P46013 3256 aaKnown RBP1.76□□□□□ -2.13
SCN1A-219ENST00000641575 SPATA8Q6RVD6 105 aa1.76□□□□□ -2.13
SCN1A-219ENST00000641575 SPRR4Q96PI1 79 aa1.76□□□□□ -2.13
SCN1A-219ENST00000641575 NOTCH2NLQ7Z3S9 236 aa1.75□□□□□ -2.13
SCN1A-219ENST00000641575 TRRAPQ9Y4A5 3859 aa1.75□□□□□ -2.13
SCN1A-219ENST00000641575 Q5W150 140 aa1.75□□□□□ -2.13
SCN1A-219ENST00000641575 M0QZ58 72 aa1.75□□□□□ -2.13
SCN1A-219ENST00000641575 TNP1P09430 55 aa1.75□□□□□ -2.13
SCN1A-219ENST00000641575 PLAC8Q9NZF1 115 aa1.74□□□□□ -2.13
SCN1A-219ENST00000641575 ZFHX4Q86UP3 3567 aa1.74□□□□□ -2.13
SCN1A-219ENST00000641575 MMP24-AS1A0A0U1RRL7 71 aa1.74□□□□□ -2.13
SCN1A-219ENST00000641575 RPL37P61927 97 aaKnown RBP1.74□□□□□ -2.13
SCN1A-219ENST00000641575 A0A0G2JQZ4 141 aa1.73□□□□□ -2.13
SCN1A-219ENST00000641575 C20orf166-AS1Q96NR2 134 aa1.72□□□□□ -2.13
SCN1A-219ENST00000641575 CYSTM1Q9H1C7 97 aa1.72□□□□□ -2.13
SCN1A-219ENST00000641575 HECTD4Q9Y4D8 3996 aa1.72□□□□□ -2.13
SCN1A-219ENST00000641575 SPRR1BP22528 89 aa1.72□□□□□ -2.13
SCN1A-219ENST00000641575 KRTAP25-1Q3LHN0 102 aa1.71□□□□□ -2.14
SCN1A-219ENST00000641575 LYSTQ99698 3801 aa1.71□□□□□ -2.14
SCN1A-219ENST00000641575 ANK2Q01484 3957 aa1.7□□□□□ -2.14
SCN1A-219ENST00000641575 A6NN06 94 aa1.7□□□□□ -2.14
SCN1A-219ENST00000641575 ANAPC11Q9NYG5 84 aa1.7□□□□□ -2.14
SCN1A-219ENST00000641575 A8MU10 97 aa1.7□□□□□ -2.14
SCN1A-219ENST00000641575 DNAH3Q8TD57 4116 aa1.7□□□□□ -2.14
SCN1A-219ENST00000641575 KRTAP10-11P60412 298 aa1.7□□□□□ -2.14
SCN1A-219ENST00000641575 COL6A3P12111 3177 aa1.7□□□□□ -2.14
SCN1A-219ENST00000641575 SMG1Q96Q15 3661 aaKnown RBP1.68□□□□□ -2.14
SCN1A-219ENST00000641575 Q8NDZ9 215 aa1.67□□□□□ -2.14
SCN1A-219ENST00000641575 GIG44P09565 113 aaPredicted RBP1.67□□□□□ -2.14
SCN1A-219ENST00000641575 A8MUU9 505 aa1.67□□□□□ -2.14
SCN1A-219ENST00000641575 ADM2Q7Z4H4 148 aa1.66□□□□□ -2.14
SCN1A-219ENST00000641575 C10orf95Q9H7T3 257 aa1.66□□□□□ -2.14
SCN1A-219ENST00000641575 CSMD1Q96PZ7 3565 aa1.65□□□□□ -2.14
SCN1A-219ENST00000641575 LAMA5O15230 3695 aa1.65□□□□□ -2.15
SCN1A-219ENST00000641575 DNAH6Q9C0G6 4158 aa1.65□□□□□ -2.15
SCN1A-219ENST00000641575 PANO1I0J062 215 aa1.65□□□□□ -2.15
SCN1A-219ENST00000641575 MUC3AQ02505 3323 aa1.65□□□□□ -2.15
SCN1A-219ENST00000641575 A0A1W2PPR1 153 aa1.65□□□□□ -2.15
SCN1A-219ENST00000641575 DNAH7Q8WXX0 4024 aa1.64□□□□□ -2.15
SCN1A-219ENST00000641575 KRTAP10-8P60410 259 aa1.64□□□□□ -2.15
SCN1A-219ENST00000641575 SPEGQ15772 3267 aa1.63□□□□□ -2.15
SCN1A-219ENST00000641575 VPS13CQ709C8 3753 aa1.63□□□□□ -2.15
SCN1A-219ENST00000641575 SVEP1Q4LDE5 3571 aa1.63□□□□□ -2.15
SCN1A-219ENST00000641575 A0A096LNT2 108 aa1.63□□□□□ -2.15
SCN1A-219ENST00000641575 EYSQ5T1H1 3165 aa1.63□□□□□ -2.15
SCN1A-219ENST00000641575 CSMD2Q7Z408 3487 aa1.63□□□□□ -2.15
SCN1A-219ENST00000641575 TPRXLQ17RH7 258 aa1.63□□□□□ -2.15
SCN1A-219ENST00000641575 Q6ZRN7 208 aaPredicted RBP1.62□□□□□ -2.15
SCN1A-219ENST00000641575 LINC00472Q9H8W2 130 aa1.62□□□□□ -2.15
SCN1A-219ENST00000641575 RYR1P21817 5038 aa1.62□□□□□ -2.15
SCN1A-219ENST00000641575 SPRR1AP35321 89 aa1.62□□□□□ -2.15
SCN1A-219ENST00000641575 CUBNO60494 3623 aa1.61□□□□□ -2.15
SCN1A-219ENST00000641575 LOC400499M0QZD8 3231 aa1.61□□□□□ -2.15
SCN1A-219ENST00000641575 ALMS1Q8TCU4 4167 aa1.6□□□□□ -2.15
SCN1A-219ENST00000641575 KRTAP26-1Q6PEX3 210 aa1.6□□□□□ -2.15
SCN1A-219ENST00000641575 KRTAP4-16G5E9R7 235 aaPredicted RBP1.6□□□□□ -2.15
SCN1A-219ENST00000641575 KRTAP11-1Q8IUC1 163 aa1.59□□□□□ -2.15
SCN1A-219ENST00000641575 FRAS1Q86XX4 4008 aa1.59□□□□□ -2.16
SCN1A-219ENST00000641575 KRTAP23-1A1A580 65 aa1.58□□□□□ -2.16
SCN1A-219ENST00000641575 KRTAP10-10P60014 251 aa1.58□□□□□ -2.16
SCN1A-219ENST00000641575 DCHS1Q96JQ0 3298 aa1.57□□□□□ -2.16
SCN1A-219ENST00000641575 ZNF469Q96JG9 3925 aaPredicted RBP1.57□□□□□ -2.16
SCN1A-219ENST00000641575 KRTAP10-3P60369 221 aa1.57□□□□□ -2.16
SCN1A-219ENST00000641575 KRTAP29-1A8MX34 341 aaPredicted RBP1.56□□□□□ -2.16
SCN1A-219ENST00000641575 DYNC2H1Q8NCM8 4307 aaKnown RBP1.56□□□□□ -2.16
SCN1A-219ENST00000641575 DNAH1Q9P2D7 4330 aa1.55□□□□□ -2.16
SCN1A-219ENST00000641575 KRTAP10-1P60331 282 aa1.54□□□□□ -2.16
SCN1A-219ENST00000641575 VPS13BQ7Z7G8 4022 aa1.54□□□□□ -2.16
SCN1A-219ENST00000641575 VPS13DQ5THJ4 4388 aa1.53□□□□□ -2.16
SCN1A-219ENST00000641575 KRTAP1-3Q8IUG1 177 aa1.53□□□□□ -2.16
SCN1A-219ENST00000641575 KRTAP10-2P60368 255 aa1.53□□□□□ -2.16
SCN1A-219ENST00000641575 KMT2AQ03164 3969 aa1.53□□□□□ -2.16
SCN1A-219ENST00000641575 INE1O15225 51 aa1.53□□□□□ -2.16
SCN1A-219ENST00000641575 ANK3Q12955 4377 aaKnown RBP1.52□□□□□ -2.17
SCN1A-219ENST00000641575 KRTAP19-4Q3LI73 84 aa1.52□□□□□ -2.17
SCN1A-219ENST00000641575 KRTAP1-1Q07627 177 aa1.52□□□□□ -2.17
SCN1A-219ENST00000641575 H0YAA0 97 aa1.5□□□□□ -2.17
SCN1A-219ENST00000641575 DNAH17Q9UFH2 4485 aa1.5□□□□□ -2.17
SCN1A-219ENST00000641575 PRKDCP78527 4128 aaKnown RBP1.5□□□□□ -2.17
SCN1A-219ENST00000641575 MT3P25713 68 aa1.49□□□□□ -2.17
SCN1A-219ENST00000641575 FLGP20930 4061 aaPredicted RBP1.49□□□□□ -2.17
SCN1A-219ENST00000641575 PKHD1P08F94 4074 aa1.48□□□□□ -2.17
SCN1A-219ENST00000641575 CSMD3Q7Z407 3707 aa1.47□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms