RNA–Protein interactions for RNA: ENST00000641375.1

PHGDH-216, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 2,196 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-216ENST00000641375 SMR3BP02814 79 aaPredicted RBP9.69□□□□□ -0.86
PHGDH-216ENST00000641375 KRTAP1-4P0C5Y4 121 aa9.69□□□□□ -0.86
PHGDH-216ENST00000641375 CYP4F30PQ9H0H9 118 aa9.67□□□□□ -0.86
PHGDH-216ENST00000641375 ZCCHC13Q8WW36 166 aaKnown RBP9.67□□□□□ -0.86
PHGDH-216ENST00000641375 TRAV22A0A0B4J277 110 aa9.66□□□□□ -0.86
PHGDH-216ENST00000641375 KRTAP13-2Q52LG2 175 aa9.66□□□□□ -0.86
PHGDH-216ENST00000641375 APOBP04114 4563 aaKnown RBP9.66□□□□□ -0.86
PHGDH-216ENST00000641375 PLA2G1BP04054 148 aaKnown RBP9.65□□□□□ -0.86
PHGDH-216ENST00000641375 A8MWP4 228 aa9.65□□□□□ -0.86
PHGDH-216ENST00000641375 Q96NJ1 140 aa9.64□□□□□ -0.87
PHGDH-216ENST00000641375 HCG22E2RYF7 251 aa9.61□□□□□ -0.87
PHGDH-216ENST00000641375 PSPHP1O15172 72 aa9.61□□□□□ -0.87
PHGDH-216ENST00000641375 NDUFB1O75438 58 aa9.61□□□□□ -0.87
PHGDH-216ENST00000641375 RYR3Q15413 4870 aa9.59□□□□□ -0.87
PHGDH-216ENST00000641375 KRTAP10-4P60372 401 aaPredicted RBP9.59□□□□□ -0.87
PHGDH-216ENST00000641375 ASB16-AS1Q495Z4 193 aa9.57□□□□□ -0.88
PHGDH-216ENST00000641375 TYMSOSQ8TAI1 123 aa9.57□□□□□ -0.88
PHGDH-216ENST00000641375 CDK2AP2O75956 126 aa9.56□□□□□ -0.88
PHGDH-216ENST00000641375 KTN1-AS1Q86SY8 53 aa9.56□□□□□ -0.88
PHGDH-216ENST00000641375 A8MUN3 132 aa9.54□□□□□ -0.88
PHGDH-216ENST00000641375 Q5VV11 94 aa9.54□□□□□ -0.88
PHGDH-216ENST00000641375 FAM229AH3BQW9 127 aa9.53□□□□□ -0.88
PHGDH-216ENST00000641375 C4orf48Q5BLP8 95 aa9.53□□□□□ -0.88
PHGDH-216ENST00000641375 FAT1Q14517 4588 aa9.53□□□□□ -0.88
PHGDH-216ENST00000641375 WFDC13Q8IUB5 93 aa9.53□□□□□ -0.88
PHGDH-216ENST00000641375 LIMD2Q9BT23 127 aa9.53□□□□□ -0.88
PHGDH-216ENST00000641375 CASC2Q6XLA1 102 aa9.51□□□□□ -0.89
PHGDH-216ENST00000641375 KRTAP29-1A8MX34 341 aaPredicted RBP9.51□□□□□ -0.89
PHGDH-216ENST00000641375 A0A1B0GVX0 72 aa9.5□□□□□ -0.89
PHGDH-216ENST00000641375 PRR26Q8N8Z3 221 aa9.5□□□□□ -0.89
PHGDH-216ENST00000641375 SPINK1P00995 79 aa9.5□□□□□ -0.89
PHGDH-216ENST00000641375 MMP24-AS1A0A0U1RRL7 71 aa9.48□□□□□ -0.89
PHGDH-216ENST00000641375 RBM12B-AS1Q9P1G2 102 aa9.48□□□□□ -0.89
PHGDH-216ENST00000641375 NDUFS5O43920 106 aa9.48□□□□□ -0.89
PHGDH-216ENST00000641375 IGHV6-1A0A0B4J1U7 121 aa9.47□□□□□ -0.89
PHGDH-216ENST00000641375 SPAG11AQ6PDA7 123 aa9.46□□□□□ -0.89
PHGDH-216ENST00000641375 C8orf17Q9NRJ1 99 aa9.46□□□□□ -0.89
PHGDH-216ENST00000641375 ATP11AUNQ6ZP68 121 aa9.46□□□□□ -0.9
PHGDH-216ENST00000641375 LINC00304Q8N9R0 145 aa9.46□□□□□ -0.9
PHGDH-216ENST00000641375 RPS29P62273 56 aaKnown RBP9.44□□□□□ -0.9
PHGDH-216ENST00000641375 A8MU10 97 aa9.44□□□□□ -0.9
PHGDH-216ENST00000641375 Q8N9P0 234 aaPredicted RBP9.44□□□□□ -0.9
PHGDH-216ENST00000641375 SPANXA2-OT1Q8N9U9 137 aa9.44□□□□□ -0.9
PHGDH-216ENST00000641375 CHKB-CPT1BH3BT56 60 aa9.43□□□□□ -0.9
PHGDH-216ENST00000641375 Q5VSD8 79 aa9.43□□□□□ -0.9
PHGDH-216ENST00000641375 PRR4Q16378 134 aa9.42□□□□□ -0.9
PHGDH-216ENST00000641375 HSPG2P98160 4391 aa9.42□□□□□ -0.9
PHGDH-216ENST00000641375 MP68P56378 58 aa9.4□□□□□ -0.91
PHGDH-216ENST00000641375 Q75L30 129 aa9.4□□□□□ -0.91
PHGDH-216ENST00000641375 PKHD1L1Q86WI1 4243 aa9.39□□□□□ -0.91
PHGDH-216ENST00000641375 A6NN06 94 aa9.38□□□□□ -0.91
PHGDH-216ENST00000641375 C8orf87E5RJ46 101 aa9.38□□□□□ -0.91
PHGDH-216ENST00000641375 LINC00208Q96KT6 92 aa9.38□□□□□ -0.91
PHGDH-216ENST00000641375 H3BPC8 53 aa9.37□□□□□ -0.91
PHGDH-216ENST00000641375 LOC101927531A0A1B0GV80 90 aa9.36□□□□□ -0.91
PHGDH-216ENST00000641375 MRPL34Q9BQ48 92 aaKnown RBP9.36□□□□□ -0.91
PHGDH-216ENST00000641375 PRR15LQ9BU68 103 aa9.36□□□□□ -0.91
PHGDH-216ENST00000641375 NOTCH2NLQ7Z3S9 236 aa9.36□□□□□ -0.91
PHGDH-216ENST00000641375 LCA10Q71F78 164 aa9.35□□□□□ -0.91
PHGDH-216ENST00000641375 TP53AIP1Q9HCN2 124 aa9.35□□□□□ -0.91
PHGDH-216ENST00000641375 SPTSSBQ8NFR3 76 aa9.34□□□□□ -0.91
PHGDH-216ENST00000641375 RYR1P21817 5038 aa9.33□□□□□ -0.92
PHGDH-216ENST00000641375 LINC00313P59037 77 aa9.33□□□□□ -0.92
PHGDH-216ENST00000641375 CDC42SE1Q9NRR8 79 aa9.31□□□□□ -0.92
PHGDH-216ENST00000641375 C7orf65Q6ZTY9 151 aa9.3□□□□□ -0.92
PHGDH-216ENST00000641375 A6NED7 52 aa9.29□□□□□ -0.92
PHGDH-216ENST00000641375 Q8N1X5 172 aa9.29□□□□□ -0.92
PHGDH-216ENST00000641375 H0Y9P7 68 aa9.27□□□□□ -0.92
PHGDH-216ENST00000641375 EPPK1P58107 5090 aaKnown RBP9.25□□□□□ -0.93
PHGDH-216ENST00000641375 KIAA1109Q2LD37 5005 aa9.24□□□□□ -0.93
PHGDH-216ENST00000641375 KRTAP10-8P60410 259 aa9.24□□□□□ -0.93
PHGDH-216ENST00000641375 KRTAP17-1Q9BYP8 105 aa9.23□□□□□ -0.93
PHGDH-216ENST00000641375 COA5Q86WW8 74 aa9.21□□□□□ -0.94
PHGDH-216ENST00000641375 LINC01558Q9Y6Z2 57 aa9.2□□□□□ -0.94
PHGDH-216ENST00000641375 KRTAP16-1A8MUX0 517 aa9.19□□□□□ -0.94
PHGDH-216ENST00000641375 IGLV7-46A0A075B6I9 117 aa9.19□□□□□ -0.94
PHGDH-216ENST00000641375 TNXBP22105 4242 aa9.18□□□□□ -0.94
PHGDH-216ENST00000641375 LRP1Q07954 4544 aaKnown RBP9.17□□□□□ -0.94
PHGDH-216ENST00000641375 FLG2Q5D862 2391 aaPredicted RBP9.16□□□□□ -0.94
PHGDH-216ENST00000641375 RETNLBQ9BQ08 111 aa9.12□□□□□ -0.95
PHGDH-216ENST00000641375 Q5W150 140 aa9.11□□□□□ -0.95
PHGDH-216ENST00000641375 FAT3Q8TDW7 4589 aa9.11□□□□□ -0.95
PHGDH-216ENST00000641375 KRTAP13-3Q3SY46 172 aa9.1□□□□□ -0.95
PHGDH-216ENST00000641375 MT1HL1P0DM35 61 aa9.06□□□□□ -0.96
PHGDH-216ENST00000641375 C9orf92A6NGG3 77 aa9.05□□□□□ -0.96
PHGDH-216ENST00000641375 MYCBP2O75592 4640 aa9.03□□□□□ -0.96
PHGDH-216ENST00000641375 SPINK7P58062 85 aa9.03□□□□□ -0.96
PHGDH-216ENST00000641375 DMBT1Q9UGM3 2413 aaPredicted RBP9.02□□□□□ -0.96
PHGDH-216ENST00000641375 PCOTHQ58A44 107 aa9□□□□□ -0.97
PHGDH-216ENST00000641375 C20orf166-AS1Q96NR2 134 aa9□□□□□ -0.97
PHGDH-216ENST00000641375 A8MUU9 505 aa8.99□□□□□ -0.97
PHGDH-216ENST00000641375 KRTAP4-5Q9BYR2 181 aa8.97□□□□□ -0.97
PHGDH-216ENST00000641375 IGKV2-30P06310 120 aa8.96□□□□□ -0.98
PHGDH-216ENST00000641375 HRES1P13985 223 aa8.94□□□□□ -0.98
PHGDH-216ENST00000641375 LINC01554Q52M75 96 aa8.93□□□□□ -0.98
PHGDH-216ENST00000641375 PRAC1Q96KF2 57 aa8.89□□□□□ -0.99
PHGDH-216ENST00000641375 IGKV2D-30A0A075B6S6 120 aa8.89□□□□□ -0.99
PHGDH-216ENST00000641375 H3BS24 57 aa8.88□□□□□ -0.99
PHGDH-216ENST00000641375 BIRC6Q9NR09 4857 aa8.82□□□□□ -1
PHGDH-216ENST00000641375 XP32Q5T750 250 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms