RNA–Protein interactions for RNA: ENST00000640289.1

GTF3A-209, Transcript of general transcription factor IIIA, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene GTF3A, Length 1,098 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-209ENST00000640289 J3KT08 172 aa7.11□□□□□ -1.27
GTF3A-209ENST00000640289 SEC61BP60468 96 aaKnown RBP7.11□□□□□ -1.27
GTF3A-209ENST00000640289 NOTCH2NLQ7Z3S9 236 aa7.11□□□□□ -1.27
GTF3A-209ENST00000640289 RPL37P61927 97 aaKnown RBP7.1□□□□□ -1.27
GTF3A-209ENST00000640289 A0A1B0GVX0 72 aa7.09□□□□□ -1.27
GTF3A-209ENST00000640289 LINC00313P59037 77 aa7.09□□□□□ -1.27
GTF3A-209ENST00000640289 PCOTHQ58A44 107 aa7.08□□□□□ -1.28
GTF3A-209ENST00000640289 LINC00846Q9NV44 126 aa7.08□□□□□ -1.28
GTF3A-209ENST00000640289 Q6ZVQ6 151 aa7.07□□□□□ -1.28
GTF3A-209ENST00000640289 KRTAP4-1Q9BYQ7 146 aa7.07□□□□□ -1.28
GTF3A-209ENST00000640289 IGKV3D-7A0A0C4DH55 119 aa7.06□□□□□ -1.28
GTF3A-209ENST00000640289 KRTAP16-1A8MUX0 517 aa7.06□□□□□ -1.28
GTF3A-209ENST00000640289 A8MWP4 228 aa7.06□□□□□ -1.28
GTF3A-209ENST00000640289 MUC2Q02817 5179 aa7.06□□□□□ -1.28
GTF3A-209ENST00000640289 NDUFB1O75438 58 aa7.05□□□□□ -1.28
GTF3A-209ENST00000640289 Q75L30 129 aa7.05□□□□□ -1.28
GTF3A-209ENST00000640289 C8orf87E5RJ46 101 aa7.04□□□□□ -1.28
GTF3A-209ENST00000640289 C20orf166-AS1Q96NR2 134 aa7.04□□□□□ -1.28
GTF3A-209ENST00000640289 A8MUU9 505 aa7.03□□□□□ -1.28
GTF3A-209ENST00000640289 BPY2O14599 106 aa7.03□□□□□ -1.28
GTF3A-209ENST00000640289 K7EQZ3 153 aa7.02□□□□□ -1.29
GTF3A-209ENST00000640289 PRR15Q8IV56 129 aa7.02□□□□□ -1.29
GTF3A-209ENST00000640289 UBL5Q9BZL1 73 aa7.02□□□□□ -1.29
GTF3A-209ENST00000640289 C8orf17Q9NRJ1 99 aa7.01□□□□□ -1.29
GTF3A-209ENST00000640289 ATP11AUNQ6ZP68 121 aa6.99□□□□□ -1.29
GTF3A-209ENST00000640289 Q8N9L7 120 aa6.99□□□□□ -1.29
GTF3A-209ENST00000640289 MMP24-AS1A0A0U1RRL7 71 aa6.97□□□□□ -1.29
GTF3A-209ENST00000640289 ACYP1P07311 99 aa6.94□□□□□ -1.3
GTF3A-209ENST00000640289 FAM240AA0A1B0GVK7 77 aa6.93□□□□□ -1.3
GTF3A-209ENST00000640289 Q8N9P0 234 aaPredicted RBP6.92□□□□□ -1.3
GTF3A-209ENST00000640289 hDV103S1A0JD37 113 aa6.91□□□□□ -1.3
GTF3A-209ENST00000640289 TMEM254Q8TBM7 123 aa6.91□□□□□ -1.3
GTF3A-209ENST00000640289 LCE2BO14633 110 aa6.9□□□□□ -1.3
GTF3A-209ENST00000640289 WFDC13Q8IUB5 93 aa6.9□□□□□ -1.3
GTF3A-209ENST00000640289 MRPL34Q9BQ48 92 aaKnown RBP6.9□□□□□ -1.3
GTF3A-209ENST00000640289 A0A0U1RQV1 116 aa6.88□□□□□ -1.31
GTF3A-209ENST00000640289 CXCL6P80162 114 aa6.88□□□□□ -1.31
GTF3A-209ENST00000640289 CASC2Q6XLA1 102 aa6.87□□□□□ -1.31
GTF3A-209ENST00000640289 FAT4Q6V0I7 4981 aa6.87□□□□□ -1.31
GTF3A-209ENST00000640289 ZCCHC13Q8WW36 166 aaKnown RBP6.86□□□□□ -1.31
GTF3A-209ENST00000640289 NDUFS5O43920 106 aa6.85□□□□□ -1.31
GTF3A-209ENST00000640289 HCG22E2RYF7 251 aa6.84□□□□□ -1.31
GTF3A-209ENST00000640289 KRTAP19-2Q3LHN2 52 aa6.84□□□□□ -1.31
GTF3A-209ENST00000640289 J3QR89 54 aa6.82□□□□□ -1.32
GTF3A-209ENST00000640289 ATP5EP2Q5VTU8 51 aa6.81□□□□□ -1.32
GTF3A-209ENST00000640289 LCE2CQ5TA81 110 aa6.8□□□□□ -1.32
GTF3A-209ENST00000640289 LINC00643Q86TS7 51 aa6.8□□□□□ -1.32
GTF3A-209ENST00000640289 HIST1H4AP62805 103 aaKnown RBP6.77□□□□□ -1.33
GTF3A-209ENST00000640289 LCE2AQ5TA79 106 aaPredicted RBP6.76□□□□□ -1.33
GTF3A-209ENST00000640289 Q5W150 140 aa6.76□□□□□ -1.33
GTF3A-209ENST00000640289 HRES1P13985 223 aa6.75□□□□□ -1.33
GTF3A-209ENST00000640289 SPINK7P58062 85 aa6.75□□□□□ -1.33
GTF3A-209ENST00000640289 A0A087WVE0 104 aa6.74□□□□□ -1.33
GTF3A-209ENST00000640289 COX6B2Q6YFQ2 88 aa6.74□□□□□ -1.33
GTF3A-209ENST00000640289 K7ERU9 68 aa6.71□□□□□ -1.34
GTF3A-209ENST00000640289 MPLKIPQ8TAP9 179 aa6.7□□□□□ -1.34
GTF3A-209ENST00000640289 MT1HP80294 61 aa6.69□□□□□ -1.34
GTF3A-209ENST00000640289 IGKV2D-30A0A075B6S6 120 aa6.68□□□□□ -1.34
GTF3A-209ENST00000640289 IGKV2-30P06310 120 aa6.68□□□□□ -1.34
GTF3A-209ENST00000640289 TP53AIP1Q9HCN2 124 aa6.67□□□□□ -1.34
GTF3A-209ENST00000640289 RBM12B-AS1Q9P1G2 102 aa6.66□□□□□ -1.34
GTF3A-209ENST00000640289 FAM236DA0A1B0GTK5 79 aa6.65□□□□□ -1.34
GTF3A-209ENST00000640289 FAM236CP0DP71 79 aa6.65□□□□□ -1.34
GTF3A-209ENST00000640289 C7orf65Q6ZTY9 151 aa6.64□□□□□ -1.35
GTF3A-209ENST00000640289 MT-ATP8P03928 68 aa6.62□□□□□ -1.35
GTF3A-209ENST00000640289 FLGP20930 4061 aaPredicted RBP6.61□□□□□ -1.35
GTF3A-209ENST00000640289 TRAV22A0A0B4J277 110 aa6.58□□□□□ -1.36
GTF3A-209ENST00000640289 M0R2T5 61 aa6.58□□□□□ -1.36
GTF3A-209ENST00000640289 UQCRQO14949 82 aa6.57□□□□□ -1.36
GTF3A-209ENST00000640289 IMUPQ9GZP8 106 aa6.55□□□□□ -1.36
GTF3A-209ENST00000640289 H0Y9P7 68 aa6.54□□□□□ -1.36
GTF3A-209ENST00000640289 OCR1Q9BZK8 76 aa6.54□□□□□ -1.36
GTF3A-209ENST00000640289 C4orf26Q17RF5 130 aa6.53□□□□□ -1.36
GTF3A-209ENST00000640289 LOC101927531A0A1B0GV80 90 aa6.51□□□□□ -1.37
GTF3A-209ENST00000640289 SCGB1A1P11684 91 aa6.51□□□□□ -1.37
GTF3A-209ENST00000640289 KRTAP10-6P60371 365 aaPredicted RBP6.51□□□□□ -1.37
GTF3A-209ENST00000640289 CYP4F30PQ9H0H9 118 aa6.51□□□□□ -1.37
GTF3A-209ENST00000640289 ATOX1O00244 68 aa6.49□□□□□ -1.37
GTF3A-209ENST00000640289 LORP23490 312 aaPredicted RBP6.49□□□□□ -1.37
GTF3A-209ENST00000640289 FAM236AA0A1B0GUQ0 79 aa6.48□□□□□ -1.37
GTF3A-209ENST00000640289 FAM236BA0A1B0GV22 79 aa6.48□□□□□ -1.37
GTF3A-209ENST00000640289 H1FX-AS1Q4G0G2 97 aa6.46□□□□□ -1.38
GTF3A-209ENST00000640289 C1orf64Q8NEQ6 169 aa6.46□□□□□ -1.38
GTF3A-209ENST00000640289 LINC00208Q96KT6 92 aa6.46□□□□□ -1.38
GTF3A-209ENST00000640289 MP68P56378 58 aa6.45□□□□□ -1.38
GTF3A-209ENST00000640289 KRTAP3-1Q9BYR8 98 aa6.45□□□□□ -1.38
GTF3A-209ENST00000640289 C5orf47Q569G3 176 aa6.44□□□□□ -1.38
GTF3A-209ENST00000640289 KLKP1Q107X0 134 aa6.41□□□□□ -1.38
GTF3A-209ENST00000640289 H3BPC8 53 aa6.38□□□□□ -1.39
GTF3A-209ENST00000640289 TRAV7A0A075B6U4 112 aa6.37□□□□□ -1.39
GTF3A-209ENST00000640289 SMIM20Q8N5G0 67 aa6.37□□□□□ -1.39
GTF3A-209ENST00000640289 KRTAP9-8Q9BYQ0 159 aa6.37□□□□□ -1.39
GTF3A-209ENST00000640289 S4R3F8 94 aa6.33□□□□□ -1.4
GTF3A-209ENST00000640289 MT2AP02795 61 aa6.32□□□□□ -1.4
GTF3A-209ENST00000640289 KRTAP9-2Q9BYQ4 174 aa6.32□□□□□ -1.4
GTF3A-209ENST00000640289 LCA10Q71F78 164 aa6.3□□□□□ -1.4
GTF3A-209ENST00000640289 MT1FP04733 61 aa6.28□□□□□ -1.4
GTF3A-209ENST00000640289 SERP2Q8N6R1 65 aa6.27□□□□□ -1.41
GTF3A-209ENST00000640289 SNURFQ9Y675 71 aa6.26□□□□□ -1.41
GTF3A-209ENST00000640289 LOC100996750A0A140TA64 210 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 281.5 ms