RNA–Protein interactions for RNA: ENST00000637450.1

CLN6-220, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 3

Gene CLN6, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-220ENST00000637450 KRTAP9-3Q9BYQ3 159 aa9.13□□□□□ -0.95
CLN6-220ENST00000637450 KRTAP10-10P60014 251 aa9.11□□□□□ -0.95
CLN6-220ENST00000637450 A0A1B0GVX0 72 aa9.1□□□□□ -0.95
CLN6-220ENST00000637450 C8orf87E5RJ46 101 aa9.1□□□□□ -0.95
CLN6-220ENST00000637450 RBM3P98179 157 aaKnown RBP9.07□□□□□ -0.96
CLN6-220ENST00000637450 VPS25Q9BRG1 176 aa9.07□□□□□ -0.96
CLN6-220ENST00000637450 KRTAP19-1Q8IUB9 90 aa9.06□□□□□ -0.96
CLN6-220ENST00000637450 PYY3Q5JQD4 70 aa9.05□□□□□ -0.96
CLN6-220ENST00000637450 MTURNQ8N3F0 131 aa9.05□□□□□ -0.96
CLN6-220ENST00000637450 ZCCHC13Q8WW36 166 aaKnown RBP9.05□□□□□ -0.96
CLN6-220ENST00000637450 DSCR8Q96T75 97 aa9.04□□□□□ -0.96
CLN6-220ENST00000637450 J3KT08 172 aa9.02□□□□□ -0.97
CLN6-220ENST00000637450 SPINK7P58062 85 aa9.02□□□□□ -0.97
CLN6-220ENST00000637450 SCGB1C2P0DMR2 95 aa9.01□□□□□ -0.97
CLN6-220ENST00000637450 C21orf62-AS1Q17RA5 79 aa9□□□□□ -0.97
CLN6-220ENST00000637450 Q6ZQT0 140 aa8.98□□□□□ -0.97
CLN6-220ENST00000637450 Q8N9P0 234 aaPredicted RBP8.98□□□□□ -0.97
CLN6-220ENST00000637450 UQCR10Q9UDW1 63 aa8.98□□□□□ -0.97
CLN6-220ENST00000637450 C9JAW5 83 aa8.97□□□□□ -0.97
CLN6-220ENST00000637450 BAALC-AS2P0C853 105 aa8.97□□□□□ -0.97
CLN6-220ENST00000637450 NDUFB1O75438 58 aa8.94□□□□□ -0.98
CLN6-220ENST00000637450 MACF1Q9UPN3 7388 aaKnown RBP8.94□□□□□ -0.98
CLN6-220ENST00000637450 SYNE2Q8WXH0 6885 aaKnown RBP8.91□□□□□ -0.98
CLN6-220ENST00000637450 C8orf17Q9NRJ1 99 aa8.9□□□□□ -0.98
CLN6-220ENST00000637450 A8MWP4 228 aa8.89□□□□□ -0.99
CLN6-220ENST00000637450 A0A1B0GW54 56 aa8.87□□□□□ -0.99
CLN6-220ENST00000637450 LYRM7Q5U5X0 104 aa8.87□□□□□ -0.99
CLN6-220ENST00000637450 WFDC13Q8IUB5 93 aa8.87□□□□□ -0.99
CLN6-220ENST00000637450 IGKV3D-7A0A0C4DH55 119 aa8.86□□□□□ -0.99
CLN6-220ENST00000637450 LOC110117498A0A087WWA1 95 aa8.85□□□□□ -0.99
CLN6-220ENST00000637450 JMJD7-PLA2G4BH0Y9G9 81 aa8.85□□□□□ -0.99
CLN6-220ENST00000637450 KRTAP19-6Q3LI70 58 aa8.85□□□□□ -0.99
CLN6-220ENST00000637450 LINC00846Q9NV44 126 aa8.84□□□□□ -0.99
CLN6-220ENST00000637450 Q6ZVQ6 151 aa8.83□□□□□ -1
CLN6-220ENST00000637450 ATXN8Q156A1 80 aa8.82□□□□□ -1
CLN6-220ENST00000637450 PDE6GP18545 87 aa8.81□□□□□ -1
CLN6-220ENST00000637450 PRR15Q8IV56 129 aa8.8□□□□□ -1
CLN6-220ENST00000637450 NAA38Q9BRA0 125 aaKnown RBP8.77□□□□□ -1.01
CLN6-220ENST00000637450 C14orf132Q9NPU4 83 aa8.76□□□□□ -1.01
CLN6-220ENST00000637450 NREPQ16612 68 aa8.75□□□□□ -1.01
CLN6-220ENST00000637450 TMEM254Q8TBM7 123 aa8.74□□□□□ -1.01
CLN6-220ENST00000637450 TMA7Q9Y2S6 64 aaKnown RBP8.74□□□□□ -1.01
CLN6-220ENST00000637450 MMP24-AS1A0A0U1RRL7 71 aa8.73□□□□□ -1.01
CLN6-220ENST00000637450 MRPL34Q9BQ48 92 aaKnown RBP8.73□□□□□ -1.01
CLN6-220ENST00000637450 M0R143 59 aa8.72□□□□□ -1.01
CLN6-220ENST00000637450 H1FX-AS1Q4G0G2 97 aa8.72□□□□□ -1.01
CLN6-220ENST00000637450 hDV103S1A0JD37 113 aa8.68□□□□□ -1.02
CLN6-220ENST00000637450 K7EQZ3 153 aa8.65□□□□□ -1.02
CLN6-220ENST00000637450 NDUFS5O43920 106 aa8.65□□□□□ -1.02
CLN6-220ENST00000637450 IGKV2D-30A0A075B6S6 120 aa8.6□□□□□ -1.03
CLN6-220ENST00000637450 IGKV2-30P06310 120 aa8.6□□□□□ -1.03
CLN6-220ENST00000637450 Q5W150 140 aa8.6□□□□□ -1.03
CLN6-220ENST00000637450 KRTAP6-3Q3LI67 103 aa8.57□□□□□ -1.04
CLN6-220ENST00000637450 C7orf65Q6ZTY9 151 aa8.57□□□□□ -1.04
CLN6-220ENST00000637450 BPY2O14599 106 aa8.55□□□□□ -1.04
CLN6-220ENST00000637450 H3BT86 120 aa8.53□□□□□ -1.04
CLN6-220ENST00000637450 BATFQ16520 125 aa8.49□□□□□ -1.05
CLN6-220ENST00000637450 C4orf26Q17RF5 130 aa8.49□□□□□ -1.05
CLN6-220ENST00000637450 CASC2Q6XLA1 102 aa8.49□□□□□ -1.05
CLN6-220ENST00000637450 Q8N9L7 120 aa8.48□□□□□ -1.05
CLN6-220ENST00000637450 C9orf118A6NHY6 69 aa8.47□□□□□ -1.05
CLN6-220ENST00000637450 HCG22E2RYF7 251 aa8.47□□□□□ -1.05
CLN6-220ENST00000637450 SMIM6P0DI80 62 aa8.47□□□□□ -1.05
CLN6-220ENST00000637450 A0A1W2PPM0 123 aa8.44□□□□□ -1.06
CLN6-220ENST00000637450 TSTD3H0UI37 97 aa8.43□□□□□ -1.06
CLN6-220ENST00000637450 CXCL6P80162 114 aa8.43□□□□□ -1.06
CLN6-220ENST00000637450 TAX1BP3O14907 124 aa8.41□□□□□ -1.06
CLN6-220ENST00000637450 C5orf47Q569G3 176 aa8.41□□□□□ -1.06
CLN6-220ENST00000637450 NEBP20929 6669 aa8.4□□□□□ -1.07
CLN6-220ENST00000637450 KRTAP3-1Q9BYR8 98 aa8.39□□□□□ -1.07
CLN6-220ENST00000637450 FAM236AA0A1B0GUQ0 79 aa8.37□□□□□ -1.07
CLN6-220ENST00000637450 FAM236BA0A1B0GV22 79 aa8.37□□□□□ -1.07
CLN6-220ENST00000637450 MUC12Q9UKN1 5478 aa8.36□□□□□ -1.07
CLN6-220ENST00000637450 MT1BP07438 61 aa8.35□□□□□ -1.07
CLN6-220ENST00000637450 S4R3F8 94 aa8.34□□□□□ -1.07
CLN6-220ENST00000637450 A6NN06 94 aa8.33□□□□□ -1.08
CLN6-220ENST00000637450 CSAG1Q6PB30 78 aa8.32□□□□□ -1.08
CLN6-220ENST00000637450 SMCPP49901 116 aaPredicted RBP8.31□□□□□ -1.08
CLN6-220ENST00000637450 Q5VV11 94 aa8.31□□□□□ -1.08
CLN6-220ENST00000637450 SPRR2GQ9BYE4 73 aa8.31□□□□□ -1.08
CLN6-220ENST00000637450 KRTAP19-8Q3LI54 63 aa8.3□□□□□ -1.08
CLN6-220ENST00000637450 C1orf64Q8NEQ6 169 aa8.3□□□□□ -1.08
CLN6-220ENST00000637450 LCA10Q71F78 164 aa8.29□□□□□ -1.08
CLN6-220ENST00000637450 SPCS1Q9Y6A9 102 aa8.29□□□□□ -1.08
CLN6-220ENST00000637450 UBL5Q9BZL1 73 aa8.28□□□□□ -1.08
CLN6-220ENST00000637450 KRTAP10-5P60370 271 aa8.21□□□□□ -1.1
CLN6-220ENST00000637450 TP53AIP1Q9HCN2 124 aa8.21□□□□□ -1.1
CLN6-220ENST00000637450 PRO0461Q9UI25 63 aa8.2□□□□□ -1.1
CLN6-220ENST00000637450 KLKP1Q107X0 134 aa8.19□□□□□ -1.1
CLN6-220ENST00000637450 KRTAP3-3Q9BYR6 98 aa8.17□□□□□ -1.1
CLN6-220ENST00000637450 LOC105371267A0A1B0GV96 52 aa8.14□□□□□ -1.11
CLN6-220ENST00000637450 MDN1Q9NU22 5596 aa8.13□□□□□ -1.11
CLN6-220ENST00000637450 KMT2DO14686 5537 aa8.11□□□□□ -1.11
CLN6-220ENST00000637450 K7EP34 96 aa8.1□□□□□ -1.11
CLN6-220ENST00000637450 CYP4F30PQ9H0H9 118 aa8.09□□□□□ -1.11
CLN6-220ENST00000637450 KRTAP5-9P26371 169 aa8.08□□□□□ -1.12
CLN6-220ENST00000637450 COL5A1-AS1Q5SY13 56 aa8.08□□□□□ -1.12
CLN6-220ENST00000637450 CRIPTQ9P021 101 aa8.07□□□□□ -1.12
CLN6-220ENST00000637450 A0A087WVE0 104 aa8.06□□□□□ -1.12
CLN6-220ENST00000637450 KRTAP20-1Q3LI63 56 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms