RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 CASC2Q6XLA1 102 aa9.22□□□□□ -0.93
CLN3-251ENST00000636853 SPANXA2-OT1Q8N9U9 137 aa9.22□□□□□ -0.93
CLN3-251ENST00000636853 A0A087X002 238 aa9.21□□□□□ -0.94
CLN3-251ENST00000636853 TRAV22A0A0B4J277 110 aa9.21□□□□□ -0.94
CLN3-251ENST00000636853 MMP24-AS1A0A0U1RRL7 71 aa9.18□□□□□ -0.94
CLN3-251ENST00000636853 SSBP3-AS1Q7Z2R9 100 aa9.18□□□□□ -0.94
CLN3-251ENST00000636853 KRTAP13-2Q52LG2 175 aa9.17□□□□□ -0.94
CLN3-251ENST00000636853 IGHV6-1A0A0B4J1U7 121 aa9.14□□□□□ -0.95
CLN3-251ENST00000636853 SEC61GP60059 68 aa9.14□□□□□ -0.95
CLN3-251ENST00000636853 PMAIP1Q13794 54 aa9.14□□□□□ -0.95
CLN3-251ENST00000636853 SPINK6Q6UWN8 80 aa9.14□□□□□ -0.95
CLN3-251ENST00000636853 CDK2AP2O75956 126 aa9.14□□□□□ -0.95
CLN3-251ENST00000636853 KRTAP1-4P0C5Y4 121 aa9.14□□□□□ -0.95
CLN3-251ENST00000636853 CD164Q04900 197 aa9.14□□□□□ -0.95
CLN3-251ENST00000636853 DYNC1H1Q14204 4646 aaKnown RBP9.12□□□□□ -0.95
CLN3-251ENST00000636853 A0A1B0GVX0 72 aa9.12□□□□□ -0.95
CLN3-251ENST00000636853 A0A1B0GVY2 172 aa9.12□□□□□ -0.95
CLN3-251ENST00000636853 C8orf17Q9NRJ1 99 aa9.12□□□□□ -0.95
CLN3-251ENST00000636853 PSPHP1O15172 72 aa9.12□□□□□ -0.95
CLN3-251ENST00000636853 LIMD2Q9BT23 127 aa9.12□□□□□ -0.95
CLN3-251ENST00000636853 LINC00208Q96KT6 92 aa9.11□□□□□ -0.95
CLN3-251ENST00000636853 H0Y9P7 68 aa9.09□□□□□ -0.95
CLN3-251ENST00000636853 SMR3BP02814 79 aaPredicted RBP9.09□□□□□ -0.95
CLN3-251ENST00000636853 NOTCH2NLQ7Z3S9 236 aa9.09□□□□□ -0.95
CLN3-251ENST00000636853 PRR4Q16378 134 aa9.08□□□□□ -0.96
CLN3-251ENST00000636853 RYR2Q92736 4967 aa9.08□□□□□ -0.96
CLN3-251ENST00000636853 A8MUN3 132 aa9.08□□□□□ -0.96
CLN3-251ENST00000636853 ASB16-AS1Q495Z4 193 aa9.08□□□□□ -0.96
CLN3-251ENST00000636853 Q5VV11 94 aa9.08□□□□□ -0.96
CLN3-251ENST00000636853 PLA2G1BP04054 148 aaKnown RBP9.07□□□□□ -0.96
CLN3-251ENST00000636853 KMT2CQ8NEZ4 4911 aaKnown RBP9.06□□□□□ -0.96
CLN3-251ENST00000636853 Q8N9P0 234 aaPredicted RBP9.06□□□□□ -0.96
CLN3-251ENST00000636853 APOBP04114 4563 aaKnown RBP9.03□□□□□ -0.96
CLN3-251ENST00000636853 NDUFS5O43920 106 aa9.02□□□□□ -0.97
CLN3-251ENST00000636853 TYMSOSQ8TAI1 123 aa9.01□□□□□ -0.97
CLN3-251ENST00000636853 MRPL34Q9BQ48 92 aaKnown RBP9.01□□□□□ -0.97
CLN3-251ENST00000636853 LOC101927531A0A1B0GV80 90 aa9.01□□□□□ -0.97
CLN3-251ENST00000636853 IGLV7-46A0A075B6I9 117 aa9□□□□□ -0.97
CLN3-251ENST00000636853 FAT1Q14517 4588 aa9□□□□□ -0.97
CLN3-251ENST00000636853 Q75L30 129 aa8.99□□□□□ -0.97
CLN3-251ENST00000636853 TP53AIP1Q9HCN2 124 aa8.97□□□□□ -0.97
CLN3-251ENST00000636853 PRR26Q8N8Z3 221 aa8.97□□□□□ -0.97
CLN3-251ENST00000636853 CHKB-CPT1BH3BT56 60 aa8.96□□□□□ -0.97
CLN3-251ENST00000636853 C4orf48Q5BLP8 95 aa8.96□□□□□ -0.98
CLN3-251ENST00000636853 PRR15LQ9BU68 103 aa8.94□□□□□ -0.98
CLN3-251ENST00000636853 COA5Q86WW8 74 aa8.94□□□□□ -0.98
CLN3-251ENST00000636853 KRTAP10-4P60372 401 aaPredicted RBP8.93□□□□□ -0.98
CLN3-251ENST00000636853 ATP11AUNQ6ZP68 121 aa8.93□□□□□ -0.98
CLN3-251ENST00000636853 C8orf87E5RJ46 101 aa8.92□□□□□ -0.98
CLN3-251ENST00000636853 LINC00313P59037 77 aa8.91□□□□□ -0.98
CLN3-251ENST00000636853 SPINK1P00995 79 aa8.9□□□□□ -0.98
CLN3-251ENST00000636853 KTN1-AS1Q86SY8 53 aa8.88□□□□□ -0.99
CLN3-251ENST00000636853 LINC00304Q8N9R0 145 aa8.88□□□□□ -0.99
CLN3-251ENST00000636853 LINC01558Q9Y6Z2 57 aa8.88□□□□□ -0.99
CLN3-251ENST00000636853 A8MU10 97 aa8.87□□□□□ -0.99
CLN3-251ENST00000636853 Q5W150 140 aa8.87□□□□□ -0.99
CLN3-251ENST00000636853 LCA10Q71F78 164 aa8.86□□□□□ -0.99
CLN3-251ENST00000636853 CDC42SE1Q9NRR8 79 aa8.86□□□□□ -0.99
CLN3-251ENST00000636853 PCOTHQ58A44 107 aa8.85□□□□□ -0.99
CLN3-251ENST00000636853 A6NED7 52 aa8.84□□□□□ -0.99
CLN3-251ENST00000636853 PKHD1L1Q86WI1 4243 aa8.81□□□□□ -1
CLN3-251ENST00000636853 RYR3Q15413 4870 aa8.81□□□□□ -1
CLN3-251ENST00000636853 A6NN06 94 aa8.81□□□□□ -1
CLN3-251ENST00000636853 KRTAP16-1A8MUX0 517 aa8.81□□□□□ -1
CLN3-251ENST00000636853 KRTAP13-3Q3SY46 172 aa8.81□□□□□ -1
CLN3-251ENST00000636853 SPAG11AQ6PDA7 123 aa8.8□□□□□ -1
CLN3-251ENST00000636853 RETNLBQ9BQ08 111 aa8.79□□□□□ -1
CLN3-251ENST00000636853 RPS29P62273 56 aaKnown RBP8.78□□□□□ -1
CLN3-251ENST00000636853 SPTSSBQ8NFR3 76 aa8.77□□□□□ -1.01
CLN3-251ENST00000636853 HSPG2P98160 4391 aa8.76□□□□□ -1.01
CLN3-251ENST00000636853 FAM229AH3BQW9 127 aa8.74□□□□□ -1.01
CLN3-251ENST00000636853 HRES1P13985 223 aa8.74□□□□□ -1.01
CLN3-251ENST00000636853 RBM12B-AS1Q9P1G2 102 aa8.7□□□□□ -1.02
CLN3-251ENST00000636853 Q5VSD8 79 aa8.69□□□□□ -1.02
CLN3-251ENST00000636853 C7orf65Q6ZTY9 151 aa8.69□□□□□ -1.02
CLN3-251ENST00000636853 LRP1Q07954 4544 aaKnown RBP8.65□□□□□ -1.02
CLN3-251ENST00000636853 C9orf92A6NGG3 77 aa8.64□□□□□ -1.03
CLN3-251ENST00000636853 IGKV2-30P06310 120 aa8.64□□□□□ -1.03
CLN3-251ENST00000636853 SPINK7P58062 85 aa8.64□□□□□ -1.03
CLN3-251ENST00000636853 KRTAP17-1Q9BYP8 105 aa8.64□□□□□ -1.03
CLN3-251ENST00000636853 TNXBP22105 4242 aa8.63□□□□□ -1.03
CLN3-251ENST00000636853 Q8N1X5 172 aa8.62□□□□□ -1.03
CLN3-251ENST00000636853 RYR1P21817 5038 aa8.62□□□□□ -1.03
CLN3-251ENST00000636853 FLG2Q5D862 2391 aaPredicted RBP8.6□□□□□ -1.03
CLN3-251ENST00000636853 ACYP2P14621 99 aa8.6□□□□□ -1.03
CLN3-251ENST00000636853 IGKV2D-30A0A075B6S6 120 aa8.59□□□□□ -1.03
CLN3-251ENST00000636853 KRTAP10-8P60410 259 aa8.57□□□□□ -1.04
CLN3-251ENST00000636853 KIAA1109Q2LD37 5005 aa8.54□□□□□ -1.04
CLN3-251ENST00000636853 DMAC1Q96GE9 116 aa8.54□□□□□ -1.04
CLN3-251ENST00000636853 FAT3Q8TDW7 4589 aa8.53□□□□□ -1.04
CLN3-251ENST00000636853 C20orf166-AS1Q96NR2 134 aa8.51□□□□□ -1.05
CLN3-251ENST00000636853 A8MUU9 505 aa8.51□□□□□ -1.05
CLN3-251ENST00000636853 EPPK1P58107 5090 aaKnown RBP8.5□□□□□ -1.05
CLN3-251ENST00000636853 DMBT1Q9UGM3 2413 aaPredicted RBP8.45□□□□□ -1.06
CLN3-251ENST00000636853 SPATA8Q6RVD6 105 aa8.45□□□□□ -1.06
CLN3-251ENST00000636853 MYCBP2O75592 4640 aa8.43□□□□□ -1.06
CLN3-251ENST00000636853 A0A1B0GU69 56 aa8.42□□□□□ -1.06
CLN3-251ENST00000636853 MT1HL1P0DM35 61 aa8.41□□□□□ -1.06
CLN3-251ENST00000636853 UQCR11O14957 56 aa8.34□□□□□ -1.07
CLN3-251ENST00000636853 MIR22HGQ0VDD5 57 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms