RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 TYMSOSQ8TAI1 123 aa12.75□□□□□ -0.37
PNKP-220ENST00000627232 TP53AIP1Q9HCN2 124 aa12.75□□□□□ -0.37
PNKP-220ENST00000627232 SMR3BP02814 79 aaPredicted RBP12.74□□□□□ -0.37
PNKP-220ENST00000627232 H0Y9P7 68 aa12.72□□□□□ -0.37
PNKP-220ENST00000627232 MRPL34Q9BQ48 92 aaKnown RBP12.72□□□□□ -0.37
PNKP-220ENST00000627232 C8orf87E5RJ46 101 aa12.71□□□□□ -0.38
PNKP-220ENST00000627232 C1orf195Q5TG92 126 aa12.71□□□□□ -0.38
PNKP-220ENST00000627232 C4orf48Q5BLP8 95 aa12.7□□□□□ -0.38
PNKP-220ENST00000627232 KRTAP10-4P60372 401 aaPredicted RBP12.69□□□□□ -0.38
PNKP-220ENST00000627232 VPS13BQ7Z7G8 4022 aa12.69□□□□□ -0.38
PNKP-220ENST00000627232 DYNC1H1Q14204 4646 aaKnown RBP12.69□□□□□ -0.38
PNKP-220ENST00000627232 NOTCH2NLQ7Z3S9 236 aa12.68□□□□□ -0.38
PNKP-220ENST00000627232 RYR2Q92736 4967 aa12.68□□□□□ -0.38
PNKP-220ENST00000627232 TRAV22A0A0B4J277 110 aa12.67□□□□□ -0.38
PNKP-220ENST00000627232 SPINK1P00995 79 aa12.67□□□□□ -0.38
PNKP-220ENST00000627232 PKHD1P08F94 4074 aa12.67□□□□□ -0.38
PNKP-220ENST00000627232 LINC00208Q96KT6 92 aa12.67□□□□□ -0.38
PNKP-220ENST00000627232 SERP1Q9Y6X1 66 aa12.67□□□□□ -0.38
PNKP-220ENST00000627232 RPS29P62273 56 aaKnown RBP12.63□□□□□ -0.39
PNKP-220ENST00000627232 PRR26Q8N8Z3 221 aa12.62□□□□□ -0.39
PNKP-220ENST00000627232 NDUFS5O43920 106 aa12.62□□□□□ -0.39
PNKP-220ENST00000627232 SPAG11AQ6PDA7 123 aa12.62□□□□□ -0.39
PNKP-220ENST00000627232 LINC00304Q8N9R0 145 aa12.59□□□□□ -0.39
PNKP-220ENST00000627232 C1orf64Q8NEQ6 169 aa12.59□□□□□ -0.39
PNKP-220ENST00000627232 LINC00313P59037 77 aa12.58□□□□□ -0.4
PNKP-220ENST00000627232 OXTP01178 125 aa12.57□□□□□ -0.4
PNKP-220ENST00000627232 APOBP04114 4563 aaKnown RBP12.55□□□□□ -0.4
PNKP-220ENST00000627232 SPANXA2-OT1Q8N9U9 137 aa12.49□□□□□ -0.41
PNKP-220ENST00000627232 CYP4F30PQ9H0H9 118 aa12.49□□□□□ -0.41
PNKP-220ENST00000627232 FAM229AH3BQW9 127 aa12.47□□□□□ -0.41
PNKP-220ENST00000627232 Q8N9P0 234 aaPredicted RBP12.47□□□□□ -0.41
PNKP-220ENST00000627232 KRTAP16-1A8MUX0 517 aa12.45□□□□□ -0.42
PNKP-220ENST00000627232 KMT2CQ8NEZ4 4911 aaKnown RBP12.45□□□□□ -0.42
PNKP-220ENST00000627232 KRTAP13-3Q3SY46 172 aa12.44□□□□□ -0.42
PNKP-220ENST00000627232 Q5W150 140 aa12.41□□□□□ -0.42
PNKP-220ENST00000627232 LOC101927531A0A1B0GV80 90 aa12.4□□□□□ -0.42
PNKP-220ENST00000627232 SMIM26A0A096LP01 95 aa12.38□□□□□ -0.43
PNKP-220ENST00000627232 PKHD1L1Q86WI1 4243 aa12.35□□□□□ -0.43
PNKP-220ENST00000627232 IGLV7-46A0A075B6I9 117 aa12.35□□□□□ -0.43
PNKP-220ENST00000627232 PRR4Q16378 134 aa12.35□□□□□ -0.43
PNKP-220ENST00000627232 Q5VSD8 79 aa12.34□□□□□ -0.43
PNKP-220ENST00000627232 PCOTHQ58A44 107 aa12.33□□□□□ -0.44
PNKP-220ENST00000627232 FAT1Q14517 4588 aa12.33□□□□□ -0.44
PNKP-220ENST00000627232 FP248Q71RG6 208 aaPredicted RBP12.25□□□□□ -0.45
PNKP-220ENST00000627232 KRTAP10-8P60410 259 aa12.22□□□□□ -0.45
PNKP-220ENST00000627232 IGKV2-30P06310 120 aa12.21□□□□□ -0.46
PNKP-220ENST00000627232 RETNLBQ9BQ08 111 aa12.19□□□□□ -0.46
PNKP-220ENST00000627232 Q8N1X5 172 aa12.16□□□□□ -0.46
PNKP-220ENST00000627232 RYR3Q15413 4870 aa12.14□□□□□ -0.47
PNKP-220ENST00000627232 HSPG2P98160 4391 aa12.14□□□□□ -0.47
PNKP-220ENST00000627232 C4orf26Q17RF5 130 aa12.13□□□□□ -0.47
PNKP-220ENST00000627232 COA5Q86WW8 74 aa12.11□□□□□ -0.47
PNKP-220ENST00000627232 C20orf166-AS1Q96NR2 134 aa12.11□□□□□ -0.47
PNKP-220ENST00000627232 A8MUU9 505 aa12.1□□□□□ -0.47
PNKP-220ENST00000627232 KRTAP17-1Q9BYP8 105 aa12.1□□□□□ -0.47
PNKP-220ENST00000627232 FLG2Q5D862 2391 aaPredicted RBP12.08□□□□□ -0.48
PNKP-220ENST00000627232 C9orf92A6NGG3 77 aa12.08□□□□□ -0.48
PNKP-220ENST00000627232 HRES1P13985 223 aa12.08□□□□□ -0.48
PNKP-220ENST00000627232 Q1T7F1 81 aa12.06□□□□□ -0.48
PNKP-220ENST00000627232 MPLKIPQ8TAP9 179 aa12.06□□□□□ -0.48
PNKP-220ENST00000627232 RYR1P21817 5038 aa12.05□□□□□ -0.48
PNKP-220ENST00000627232 IGKV2D-30A0A075B6S6 120 aa12.03□□□□□ -0.48
PNKP-220ENST00000627232 DMAC1Q96GE9 116 aa12□□□□□ -0.49
PNKP-220ENST00000627232 V9GYY9 64 aa11.99□□□□□ -0.49
PNKP-220ENST00000627232 ACYP2P14621 99 aa11.98□□□□□ -0.49
PNKP-220ENST00000627232 C7orf65Q6ZTY9 151 aa11.98□□□□□ -0.49
PNKP-220ENST00000627232 TNXBP22105 4242 aa11.94□□□□□ -0.5
PNKP-220ENST00000627232 Q75L30 129 aa11.94□□□□□ -0.5
PNKP-220ENST00000627232 MT1HL1P0DM35 61 aa11.93□□□□□ -0.5
PNKP-220ENST00000627232 LRP1Q07954 4544 aaKnown RBP11.86□□□□□ -0.51
PNKP-220ENST00000627232 FAT3Q8TDW7 4589 aa11.85□□□□□ -0.51
PNKP-220ENST00000627232 KIAA1109Q2LD37 5005 aa11.81□□□□□ -0.52
PNKP-220ENST00000627232 CHKB-CPT1BH3BT56 60 aa11.78□□□□□ -0.52
PNKP-220ENST00000627232 A8MUN3 132 aa11.77□□□□□ -0.52
PNKP-220ENST00000627232 PSPHP1O15172 72 aa11.76□□□□□ -0.53
PNKP-220ENST00000627232 LINC01558Q9Y6Z2 57 aa11.76□□□□□ -0.53
PNKP-220ENST00000627232 SPINK7P58062 85 aa11.74□□□□□ -0.53
PNKP-220ENST00000627232 RPL37P61927 97 aaKnown RBP11.73□□□□□ -0.53
PNKP-220ENST00000627232 DMBT1Q9UGM3 2413 aaPredicted RBP11.72□□□□□ -0.53
PNKP-220ENST00000627232 ATP11AUNQ6ZP68 121 aa11.72□□□□□ -0.53
PNKP-220ENST00000627232 XP32Q5T750 250 aa11.71□□□□□ -0.53
PNKP-220ENST00000627232 PRR15LQ9BU68 103 aa11.7□□□□□ -0.54
PNKP-220ENST00000627232 Q5VV11 94 aa11.7□□□□□ -0.54
PNKP-220ENST00000627232 EPPK1P58107 5090 aaKnown RBP11.69□□□□□ -0.54
PNKP-220ENST00000627232 KRTAP4-5Q9BYR2 181 aa11.66□□□□□ -0.54
PNKP-220ENST00000627232 BRK1Q8WUW1 75 aa11.59□□□□□ -0.55
PNKP-220ENST00000627232 TPRXLQ17RH7 258 aa11.58□□□□□ -0.56
PNKP-220ENST00000627232 PRO0628Q9UI54 55 aa11.56□□□□□ -0.56
PNKP-220ENST00000627232 KRTAP3-1Q9BYR8 98 aa11.55□□□□□ -0.56
PNKP-220ENST00000627232 COX6B2Q6YFQ2 88 aa11.54□□□□□ -0.56
PNKP-220ENST00000627232 SVIPQ8NHG7 77 aa11.53□□□□□ -0.56
PNKP-220ENST00000627232 MYCBP2O75592 4640 aa11.52□□□□□ -0.57
PNKP-220ENST00000627232 SPTSSBQ8NFR3 76 aa11.49□□□□□ -0.57
PNKP-220ENST00000627232 A0A1B0GU69 56 aa11.43□□□□□ -0.58
PNKP-220ENST00000627232 A6NED7 52 aa11.42□□□□□ -0.58
PNKP-220ENST00000627232 J3QL48 77 aa11.36□□□□□ -0.59
PNKP-220ENST00000627232 CDC42SE1Q9NRR8 79 aa11.3□□□□□ -0.6
PNKP-220ENST00000627232 LCA10Q71F78 164 aa11.3□□□□□ -0.6
PNKP-220ENST00000627232 SEC61GP60059 68 aa11.25□□□□□ -0.61
PNKP-220ENST00000627232 A8MU10 97 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 146 ms