RNA–Protein interactions for RNA: ENST00000622668.4

HDAC9-229, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 4,279 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-229ENST00000622668 SPINK7P58062 85 aa5.25□□□□□ -1.57
HDAC9-229ENST00000622668 DNHD1Q96M86 4753 aa5.24□□□□□ -1.57
HDAC9-229ENST00000622668 ATP5EP56381 51 aaPredicted RBP5.23□□□□□ -1.57
HDAC9-229ENST00000622668 CCDC179H3BU77 68 aa5.22□□□□□ -1.57
HDAC9-229ENST00000622668 A6NED7 52 aa5.22□□□□□ -1.57
HDAC9-229ENST00000622668 LINC00472Q9H8W2 130 aa5.21□□□□□ -1.58
HDAC9-229ENST00000622668 KRTAP13-1Q8IUC0 172 aa5.19□□□□□ -1.58
HDAC9-229ENST00000622668 A0A1B0GU69 56 aa5.19□□□□□ -1.58
HDAC9-229ENST00000622668 V9GYY9 64 aa5.19□□□□□ -1.58
HDAC9-229ENST00000622668 MMP24-AS1A0A0U1RRL7 71 aa5.17□□□□□ -1.58
HDAC9-229ENST00000622668 CSAG1Q6PB30 78 aa5.17□□□□□ -1.58
HDAC9-229ENST00000622668 RPS29P62273 56 aaKnown RBP5.15□□□□□ -1.58
HDAC9-229ENST00000622668 KRTAP29-1A8MX34 341 aaPredicted RBP5.14□□□□□ -1.59
HDAC9-229ENST00000622668 KRTAP1-4P0C5Y4 121 aa5.14□□□□□ -1.59
HDAC9-229ENST00000622668 ZNF469Q96JG9 3925 aaPredicted RBP5.14□□□□□ -1.59
HDAC9-229ENST00000622668 Q8N9P0 234 aaPredicted RBP5.13□□□□□ -1.59
HDAC9-229ENST00000622668 PSPHP1O15172 72 aa5.11□□□□□ -1.59
HDAC9-229ENST00000622668 BRK1Q8WUW1 75 aa5.11□□□□□ -1.59
HDAC9-229ENST00000622668 Q5W150 140 aa5.1□□□□□ -1.59
HDAC9-229ENST00000622668 HRES1P13985 223 aa5.09□□□□□ -1.59
HDAC9-229ENST00000622668 S4R3F8 94 aa5.09□□□□□ -1.59
HDAC9-229ENST00000622668 NOTCH2NLQ7Z3S9 236 aa5.08□□□□□ -1.6
HDAC9-229ENST00000622668 COA5Q86WW8 74 aa5.07□□□□□ -1.6
HDAC9-229ENST00000622668 RPL37P61927 97 aaKnown RBP5.07□□□□□ -1.6
HDAC9-229ENST00000622668 SMIM26A0A096LP01 95 aa5.06□□□□□ -1.6
HDAC9-229ENST00000622668 A0A0D9SG42 100 aa5.06□□□□□ -1.6
HDAC9-229ENST00000622668 SPINT4Q6UDR6 99 aa5.05□□□□□ -1.6
HDAC9-229ENST00000622668 ASB16-AS1Q495Z4 193 aa5.04□□□□□ -1.6
HDAC9-229ENST00000622668 CYP4F30PQ9H0H9 118 aa5.04□□□□□ -1.6
HDAC9-229ENST00000622668 Q75L30 129 aa5.03□□□□□ -1.6
HDAC9-229ENST00000622668 C20orf166-AS1Q96NR2 134 aa5.03□□□□□ -1.6
HDAC9-229ENST00000622668 VPS13CQ709C8 3753 aa5.03□□□□□ -1.6
HDAC9-229ENST00000622668 CAMK2N1Q7Z7J9 78 aa5.03□□□□□ -1.6
HDAC9-229ENST00000622668 Q5XG85 94 aa5.03□□□□□ -1.6
HDAC9-229ENST00000622668 KRTAP10-8P60410 259 aa5.02□□□□□ -1.61
HDAC9-229ENST00000622668 A8MUN3 132 aa5.02□□□□□ -1.61
HDAC9-229ENST00000622668 SVIPQ8NHG7 77 aa5.02□□□□□ -1.61
HDAC9-229ENST00000622668 R4GN34 69 aa5.02□□□□□ -1.61
HDAC9-229ENST00000622668 TPRXLQ17RH7 258 aa5.01□□□□□ -1.61
HDAC9-229ENST00000622668 XP32Q5T750 250 aa5.01□□□□□ -1.61
HDAC9-229ENST00000622668 AKAP9Q99996 3911 aa5□□□□□ -1.61
HDAC9-229ENST00000622668 OCR1Q9BZK8 76 aa5□□□□□ -1.61
HDAC9-229ENST00000622668 KRTAP4-5Q9BYR2 181 aa4.98□□□□□ -1.61
HDAC9-229ENST00000622668 KLKP1Q107X0 134 aa4.95□□□□□ -1.62
HDAC9-229ENST00000622668 H1FX-AS1Q4G0G2 97 aa4.94□□□□□ -1.62
HDAC9-229ENST00000622668 LCA10Q71F78 164 aa4.94□□□□□ -1.62
HDAC9-229ENST00000622668 UQCR11O14957 56 aa4.93□□□□□ -1.62
HDAC9-229ENST00000622668 KRTAP13-3Q3SY46 172 aa4.92□□□□□ -1.62
HDAC9-229ENST00000622668 M0QZ58 72 aa4.9□□□□□ -1.62
HDAC9-229ENST00000622668 SPANXA2-OT1Q8N9U9 137 aa4.9□□□□□ -1.62
HDAC9-229ENST00000622668 A8MUU9 505 aa4.9□□□□□ -1.62
HDAC9-229ENST00000622668 H7BZZ5 65 aa4.88□□□□□ -1.63
HDAC9-229ENST00000622668 A0A1B0GU33 70 aa4.86□□□□□ -1.63
HDAC9-229ENST00000622668 ADM2Q7Z4H4 148 aa4.86□□□□□ -1.63
HDAC9-229ENST00000622668 PLAC4Q8WY50 150 aa4.86□□□□□ -1.63
HDAC9-229ENST00000622668 HUWE1Q7Z6Z7 4374 aaKnown RBP4.85□□□□□ -1.63
HDAC9-229ENST00000622668 MIR22HGQ0VDD5 57 aa4.84□□□□□ -1.63
HDAC9-229ENST00000622668 PMAIP1Q13794 54 aa4.83□□□□□ -1.64
HDAC9-229ENST00000622668 MT1HL1P0DM35 61 aa4.81□□□□□ -1.64
HDAC9-229ENST00000622668 KRTAP10-10P60014 251 aa4.81□□□□□ -1.64
HDAC9-229ENST00000622668 DNAH9Q9NYC9 4486 aa4.8□□□□□ -1.64
HDAC9-229ENST00000622668 DMAC1Q96GE9 116 aa4.77□□□□□ -1.65
HDAC9-229ENST00000622668 CRIPTQ9P021 101 aa4.76□□□□□ -1.65
HDAC9-229ENST00000622668 CSMD3Q7Z407 3707 aa4.73□□□□□ -1.65
HDAC9-229ENST00000622668 PRKDCP78527 4128 aaKnown RBP4.71□□□□□ -1.66
HDAC9-229ENST00000622668 CDC42SE1Q9NRR8 79 aa4.7□□□□□ -1.66
HDAC9-229ENST00000622668 KRTAP10-4P60372 401 aaPredicted RBP4.7□□□□□ -1.66
HDAC9-229ENST00000622668 DNAH5Q8TE73 4624 aa4.7□□□□□ -1.66
HDAC9-229ENST00000622668 RPS28P62857 69 aaKnown RBP4.68□□□□□ -1.66
HDAC9-229ENST00000622668 KIAA1109Q2LD37 5005 aa4.68□□□□□ -1.66
HDAC9-229ENST00000622668 KRTAP16-1A8MUX0 517 aa4.66□□□□□ -1.66
HDAC9-229ENST00000622668 SPATA8Q6RVD6 105 aa4.65□□□□□ -1.66
HDAC9-229ENST00000622668 RYR1P21817 5038 aa4.65□□□□□ -1.67
HDAC9-229ENST00000622668 PLECQ15149 4684 aaKnown RBP4.64□□□□□ -1.67
HDAC9-229ENST00000622668 CYSTM1Q9H1C7 97 aa4.62□□□□□ -1.67
HDAC9-229ENST00000622668 LINC01558Q9Y6Z2 57 aa4.59□□□□□ -1.67
HDAC9-229ENST00000622668 DNAH11Q96DT5 4516 aa4.58□□□□□ -1.68
HDAC9-229ENST00000622668 ALMS1Q8TCU4 4167 aa4.58□□□□□ -1.68
HDAC9-229ENST00000622668 RYR3Q15413 4870 aa4.58□□□□□ -1.68
HDAC9-229ENST00000622668 FAT1Q14517 4588 aa4.56□□□□□ -1.68
HDAC9-229ENST00000622668 STARD9Q9P2P6 4700 aa4.56□□□□□ -1.68
HDAC9-229ENST00000622668 ANK2Q01484 3957 aa4.55□□□□□ -1.68
HDAC9-229ENST00000622668 DYNC1H1Q14204 4646 aaKnown RBP4.55□□□□□ -1.68
HDAC9-229ENST00000622668 Q1T7F1 81 aa4.54□□□□□ -1.68
HDAC9-229ENST00000622668 HYDINQ4G0P3 5121 aa4.54□□□□□ -1.68
HDAC9-229ENST00000622668 DNAH1Q9P2D7 4330 aa4.52□□□□□ -1.69
HDAC9-229ENST00000622668 A8MU10 97 aa4.49□□□□□ -1.69
HDAC9-229ENST00000622668 PRO2289Q9P1D8 64 aa4.48□□□□□ -1.69
HDAC9-229ENST00000622668 LRP1BQ9NZR2 4599 aa4.48□□□□□ -1.69
HDAC9-229ENST00000622668 PRO0628Q9UI54 55 aa4.47□□□□□ -1.69
HDAC9-229ENST00000622668 BIRC6Q9NR09 4857 aa4.44□□□□□ -1.7
HDAC9-229ENST00000622668 VPS13DQ5THJ4 4388 aa4.43□□□□□ -1.7
HDAC9-229ENST00000622668 HERC2O95714 4834 aa4.43□□□□□ -1.7
HDAC9-229ENST00000622668 P0C880 135 aa4.43□□□□□ -1.7
HDAC9-229ENST00000622668 Q5VV11 94 aa4.42□□□□□ -1.7
HDAC9-229ENST00000622668 TNP1P09430 55 aa4.41□□□□□ -1.7
HDAC9-229ENST00000622668 DNAH10Q8IVF4 4471 aa4.38□□□□□ -1.71
HDAC9-229ENST00000622668 LYSTQ99698 3801 aa4.38□□□□□ -1.71
HDAC9-229ENST00000622668 KRTAP17-1Q9BYP8 105 aa4.38□□□□□ -1.71
HDAC9-229ENST00000622668 RYR2Q92736 4967 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms