RNA–Protein interactions for RNA: ENST00000610489.1

SYNE1-240, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 1,754 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-240ENST00000610489 LRP2P98164 4655 aa5.79□□□□□ -1.48
SYNE1-240ENST00000610489 A0A1B0GW54 56 aa5.77□□□□□ -1.49
SYNE1-240ENST00000610489 TPRXLQ17RH7 258 aa5.77□□□□□ -1.49
SYNE1-240ENST00000610489 Q96NJ1 140 aa5.76□□□□□ -1.49
SYNE1-240ENST00000610489 SEC61BP60468 96 aaKnown RBP5.75□□□□□ -1.49
SYNE1-240ENST00000610489 MT-ATP8P03928 68 aa5.74□□□□□ -1.49
SYNE1-240ENST00000610489 KRTAP13-3Q3SY46 172 aa5.74□□□□□ -1.49
SYNE1-240ENST00000610489 LINC00643Q86TS7 51 aa5.74□□□□□ -1.49
SYNE1-240ENST00000610489 SCGB1A1P11684 91 aa5.72□□□□□ -1.49
SYNE1-240ENST00000610489 LINC00472Q9H8W2 130 aa5.72□□□□□ -1.49
SYNE1-240ENST00000610489 LINC00846Q9NV44 126 aa5.72□□□□□ -1.49
SYNE1-240ENST00000610489 Q75L30 129 aa5.72□□□□□ -1.49
SYNE1-240ENST00000610489 IGKV4-1P06312 121 aa5.7□□□□□ -1.5
SYNE1-240ENST00000610489 DEFB116Q30KQ4 102 aa5.7□□□□□ -1.5
SYNE1-240ENST00000610489 C9orf92A6NGG3 77 aa5.69□□□□□ -1.5
SYNE1-240ENST00000610489 IMUPQ9GZP8 106 aa5.69□□□□□ -1.5
SYNE1-240ENST00000610489 NREPQ16612 68 aa5.67□□□□□ -1.5
SYNE1-240ENST00000610489 UBL5Q9BZL1 73 aa5.67□□□□□ -1.5
SYNE1-240ENST00000610489 J3KT08 172 aa5.67□□□□□ -1.5
SYNE1-240ENST00000610489 ATP5EP2Q5VTU8 51 aa5.66□□□□□ -1.5
SYNE1-240ENST00000610489 UBR4Q5T4S7 5183 aa5.66□□□□□ -1.5
SYNE1-240ENST00000610489 Q6ZVQ6 151 aa5.65□□□□□ -1.51
SYNE1-240ENST00000610489 MPLKIPQ8TAP9 179 aa5.65□□□□□ -1.51
SYNE1-240ENST00000610489 MUC17Q685J3 4493 aa5.63□□□□□ -1.51
SYNE1-240ENST00000610489 A0A1B0GVX0 72 aa5.62□□□□□ -1.51
SYNE1-240ENST00000610489 IGHV6-1A0A0B4J1U7 121 aa5.62□□□□□ -1.51
SYNE1-240ENST00000610489 IGKV3D-7A0A0C4DH55 119 aa5.62□□□□□ -1.51
SYNE1-240ENST00000610489 A8MWP4 228 aa5.62□□□□□ -1.51
SYNE1-240ENST00000610489 DSCR10P59022 87 aa5.62□□□□□ -1.51
SYNE1-240ENST00000610489 NDUFB1O75438 58 aa5.61□□□□□ -1.51
SYNE1-240ENST00000610489 CXCL6P80162 114 aa5.61□□□□□ -1.51
SYNE1-240ENST00000610489 BPY2O14599 106 aa5.6□□□□□ -1.51
SYNE1-240ENST00000610489 LINC00313P59037 77 aa5.6□□□□□ -1.51
SYNE1-240ENST00000610489 NOTCH2NLQ7Z3S9 236 aa5.6□□□□□ -1.51
SYNE1-240ENST00000610489 C8orf87E5RJ46 101 aa5.59□□□□□ -1.51
SYNE1-240ENST00000610489 PRR15Q8IV56 129 aa5.58□□□□□ -1.52
SYNE1-240ENST00000610489 RPL37P61927 97 aaKnown RBP5.57□□□□□ -1.52
SYNE1-240ENST00000610489 RNF213Q63HN8 5207 aa5.57□□□□□ -1.52
SYNE1-240ENST00000610489 KRTAP16-1A8MUX0 517 aa5.57□□□□□ -1.52
SYNE1-240ENST00000610489 K7EQZ3 153 aa5.57□□□□□ -1.52
SYNE1-240ENST00000610489 HIST1H4AP62805 103 aaKnown RBP5.56□□□□□ -1.52
SYNE1-240ENST00000610489 C20orf166-AS1Q96NR2 134 aa5.56□□□□□ -1.52
SYNE1-240ENST00000610489 C8orf17Q9NRJ1 99 aa5.55□□□□□ -1.52
SYNE1-240ENST00000610489 A8MUU9 505 aa5.55□□□□□ -1.52
SYNE1-240ENST00000610489 FAM236AA0A1B0GUQ0 79 aa5.54□□□□□ -1.52
SYNE1-240ENST00000610489 FAM236BA0A1B0GV22 79 aa5.54□□□□□ -1.52
SYNE1-240ENST00000610489 Q8N9L7 120 aa5.54□□□□□ -1.52
SYNE1-240ENST00000610489 A0A087WVE0 104 aa5.52□□□□□ -1.53
SYNE1-240ENST00000610489 MMP24-AS1A0A0U1RRL7 71 aa5.52□□□□□ -1.53
SYNE1-240ENST00000610489 PCOTHQ58A44 107 aa5.52□□□□□ -1.53
SYNE1-240ENST00000610489 ANAPC13Q9BS18 74 aa5.52□□□□□ -1.53
SYNE1-240ENST00000610489 LOC100996750A0A140TA64 210 aa5.51□□□□□ -1.53
SYNE1-240ENST00000610489 KRTAP4-6Q9BYQ5 205 aa5.51□□□□□ -1.53
SYNE1-240ENST00000610489 ATOX1O00244 68 aa5.5□□□□□ -1.53
SYNE1-240ENST00000610489 MUC2Q02817 5179 aa5.5□□□□□ -1.53
SYNE1-240ENST00000610489 ATP11AUNQ6ZP68 121 aa5.5□□□□□ -1.53
SYNE1-240ENST00000610489 TMEM254Q8TBM7 123 aa5.5□□□□□ -1.53
SYNE1-240ENST00000610489 hDV103S1A0JD37 113 aa5.49□□□□□ -1.53
SYNE1-240ENST00000610489 Q8N9P0 234 aaPredicted RBP5.48□□□□□ -1.53
SYNE1-240ENST00000610489 WFDC13Q8IUB5 93 aa5.47□□□□□ -1.53
SYNE1-240ENST00000610489 MRPL34Q9BQ48 92 aaKnown RBP5.47□□□□□ -1.53
SYNE1-240ENST00000610489 KRTAP4-1Q9BYQ7 146 aa5.47□□□□□ -1.53
SYNE1-240ENST00000610489 HCG22E2RYF7 251 aa5.46□□□□□ -1.54
SYNE1-240ENST00000610489 CASC2Q6XLA1 102 aa5.46□□□□□ -1.54
SYNE1-240ENST00000610489 SMIM20Q8N5G0 67 aa5.44□□□□□ -1.54
SYNE1-240ENST00000610489 COX7CP15954 63 aa5.43□□□□□ -1.54
SYNE1-240ENST00000610489 SERP2Q8N6R1 65 aa5.43□□□□□ -1.54
SYNE1-240ENST00000610489 NDUFS5O43920 106 aa5.42□□□□□ -1.54
SYNE1-240ENST00000610489 KRTAP15-1Q3LI76 137 aa5.42□□□□□ -1.54
SYNE1-240ENST00000610489 ZCCHC13Q8WW36 166 aaKnown RBP5.42□□□□□ -1.54
SYNE1-240ENST00000610489 UQCRQO14949 82 aa5.42□□□□□ -1.54
SYNE1-240ENST00000610489 TRAV7A0A075B6U4 112 aa5.41□□□□□ -1.54
SYNE1-240ENST00000610489 CCDC179H3BU77 68 aa5.4□□□□□ -1.54
SYNE1-240ENST00000610489 KRTAP19-1Q8IUB9 90 aa5.39□□□□□ -1.55
SYNE1-240ENST00000610489 OCR1Q9BZK8 76 aa5.37□□□□□ -1.55
SYNE1-240ENST00000610489 A0A0U1RQV1 116 aa5.35□□□□□ -1.55
SYNE1-240ENST00000610489 Q5W150 140 aa5.34□□□□□ -1.55
SYNE1-240ENST00000610489 FAT4Q6V0I7 4981 aa5.34□□□□□ -1.55
SYNE1-240ENST00000610489 KRTAP9-6A0A140TA67 174 aa5.34□□□□□ -1.56
SYNE1-240ENST00000610489 KRTAP9-7A8MTY7 169 aa5.34□□□□□ -1.56
SYNE1-240ENST00000610489 TP53AIP1Q9HCN2 124 aa5.34□□□□□ -1.56
SYNE1-240ENST00000610489 SPINK7P58062 85 aa5.32□□□□□ -1.56
SYNE1-240ENST00000610489 KRTAP19-2Q3LHN2 52 aa5.31□□□□□ -1.56
SYNE1-240ENST00000610489 LCE4AQ5TA78 99 aa5.31□□□□□ -1.56
SYNE1-240ENST00000610489 HRES1P13985 223 aa5.29□□□□□ -1.56
SYNE1-240ENST00000610489 KLKP1Q107X0 134 aa5.29□□□□□ -1.56
SYNE1-240ENST00000610489 C20orf197Q8N268 126 aa5.29□□□□□ -1.56
SYNE1-240ENST00000610489 C5orf47Q569G3 176 aa5.29□□□□□ -1.56
SYNE1-240ENST00000610489 KRTAP4-8Q9BYQ9 185 aa5.29□□□□□ -1.56
SYNE1-240ENST00000610489 KRTAP4-12Q9BQ66 201 aa5.28□□□□□ -1.56
SYNE1-240ENST00000610489 FLGP20930 4061 aaPredicted RBP5.27□□□□□ -1.57
SYNE1-240ENST00000610489 IGKV2D-30A0A075B6S6 120 aa5.27□□□□□ -1.57
SYNE1-240ENST00000610489 IGKV2-30P06310 120 aa5.27□□□□□ -1.57
SYNE1-240ENST00000610489 C7orf65Q6ZTY9 151 aa5.27□□□□□ -1.57
SYNE1-240ENST00000610489 TRAV22A0A0B4J277 110 aa5.26□□□□□ -1.57
SYNE1-240ENST00000610489 COX6B2Q6YFQ2 88 aa5.26□□□□□ -1.57
SYNE1-240ENST00000610489 CYSTM1Q9H1C7 97 aa5.26□□□□□ -1.57
SYNE1-240ENST00000610489 NDUFC1O43677 76 aa5.24□□□□□ -1.57
SYNE1-240ENST00000610489 H3BPC8 53 aa5.24□□□□□ -1.57
SYNE1-240ENST00000610489 RBM12B-AS1Q9P1G2 102 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms