RNA–Protein interactions for RNA: ENST00000601816.3

PNKP-216, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 682 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-216ENST00000601816 NAA38Q9BRA0 125 aaKnown RBP13.21□□□□□ -0.29
PNKP-216ENST00000601816 J3KT08 172 aa13.19□□□□□ -0.3
PNKP-216ENST00000601816 Q6ZQT0 140 aa13.17□□□□□ -0.3
PNKP-216ENST00000601816 FAM236DA0A1B0GTK5 79 aa13.16□□□□□ -0.3
PNKP-216ENST00000601816 FAM236CP0DP71 79 aa13.16□□□□□ -0.3
PNKP-216ENST00000601816 JMJD7-PLA2G4BH0Y9G9 81 aa13.15□□□□□ -0.3
PNKP-216ENST00000601816 SMIM6P0DI80 62 aa13.14□□□□□ -0.31
PNKP-216ENST00000601816 RBM12B-AS1Q9P1G2 102 aa13.12□□□□□ -0.31
PNKP-216ENST00000601816 HRES1P13985 223 aa13.11□□□□□ -0.31
PNKP-216ENST00000601816 LOC110117498A0A087WWA1 95 aa13.1□□□□□ -0.31
PNKP-216ENST00000601816 NDUFB1O75438 58 aa13.09□□□□□ -0.31
PNKP-216ENST00000601816 LYRM7Q5U5X0 104 aa13.08□□□□□ -0.32
PNKP-216ENST00000601816 MPLKIPQ8TAP9 179 aa13.08□□□□□ -0.32
PNKP-216ENST00000601816 A0A1B0GW54 56 aa13.07□□□□□ -0.32
PNKP-216ENST00000601816 PDE6GP18545 87 aa13.06□□□□□ -0.32
PNKP-216ENST00000601816 ZCCHC13Q8WW36 166 aaKnown RBP13.05□□□□□ -0.32
PNKP-216ENST00000601816 KRTAP9-8Q9BYQ0 159 aa13.05□□□□□ -0.32
PNKP-216ENST00000601816 C14orf132Q9NPU4 83 aa13.03□□□□□ -0.32
PNKP-216ENST00000601816 A8MWP4 228 aa13.01□□□□□ -0.33
PNKP-216ENST00000601816 TSTD3H0UI37 97 aa13.01□□□□□ -0.33
PNKP-216ENST00000601816 BATFQ16520 125 aa13□□□□□ -0.33
PNKP-216ENST00000601816 Q8N9P0 234 aaPredicted RBP12.98□□□□□ -0.33
PNKP-216ENST00000601816 C8orf17Q9NRJ1 99 aa12.98□□□□□ -0.33
PNKP-216ENST00000601816 IGKV3D-7A0A0C4DH55 119 aa12.95□□□□□ -0.34
PNKP-216ENST00000601816 SPINK7P58062 85 aa12.94□□□□□ -0.34
PNKP-216ENST00000601816 MTURNQ8N3F0 131 aa12.93□□□□□ -0.34
PNKP-216ENST00000601816 NREPQ16612 68 aa12.91□□□□□ -0.34
PNKP-216ENST00000601816 Q6ZVQ6 151 aa12.88□□□□□ -0.35
PNKP-216ENST00000601816 MT2AP02795 61 aa12.87□□□□□ -0.35
PNKP-216ENST00000601816 PRR15Q8IV56 129 aa12.87□□□□□ -0.35
PNKP-216ENST00000601816 C9orf118A6NHY6 69 aa12.85□□□□□ -0.35
PNKP-216ENST00000601816 H3BT86 120 aa12.84□□□□□ -0.35
PNKP-216ENST00000601816 A0A1W2PPM0 123 aa12.8□□□□□ -0.36
PNKP-216ENST00000601816 TAX1BP3O14907 124 aa12.8□□□□□ -0.36
PNKP-216ENST00000601816 MMP24-AS1A0A0U1RRL7 71 aa12.78□□□□□ -0.36
PNKP-216ENST00000601816 WFDC13Q8IUB5 93 aa12.78□□□□□ -0.36
PNKP-216ENST00000601816 MT1FP04733 61 aa12.77□□□□□ -0.37
PNKP-216ENST00000601816 TMEM254Q8TBM7 123 aa12.77□□□□□ -0.37
PNKP-216ENST00000601816 MRPL34Q9BQ48 92 aaKnown RBP12.77□□□□□ -0.37
PNKP-216ENST00000601816 LOC105371267A0A1B0GV96 52 aa12.76□□□□□ -0.37
PNKP-216ENST00000601816 K7EQZ3 153 aa12.73□□□□□ -0.37
PNKP-216ENST00000601816 KRTAP10-10P60014 251 aa12.72□□□□□ -0.37
PNKP-216ENST00000601816 hDV103S1A0JD37 113 aa12.7□□□□□ -0.38
PNKP-216ENST00000601816 USH2AO75445 5202 aa12.7□□□□□ -0.38
PNKP-216ENST00000601816 BPY2O14599 106 aa12.67□□□□□ -0.38
PNKP-216ENST00000601816 NDUFS5O43920 106 aa12.67□□□□□ -0.38
PNKP-216ENST00000601816 KRTAP9-3Q9BYQ3 159 aa12.64□□□□□ -0.39
PNKP-216ENST00000601816 SPCS1Q9Y6A9 102 aa12.63□□□□□ -0.39
PNKP-216ENST00000601816 SSPOA2VEC9 5147 aa12.6□□□□□ -0.39
PNKP-216ENST00000601816 LCE2BO14633 110 aa12.59□□□□□ -0.39
PNKP-216ENST00000601816 SMCPP49901 116 aaPredicted RBP12.53□□□□□ -0.4
PNKP-216ENST00000601816 Q8N9L7 120 aa12.53□□□□□ -0.4
PNKP-216ENST00000601816 IGKV2D-30A0A075B6S6 120 aa12.51□□□□□ -0.41
PNKP-216ENST00000601816 IGKV2-30P06310 120 aa12.51□□□□□ -0.41
PNKP-216ENST00000601816 CASC2Q6XLA1 102 aa12.51□□□□□ -0.41
PNKP-216ENST00000601816 H1FX-AS1Q4G0G2 97 aa12.49□□□□□ -0.41
PNKP-216ENST00000601816 Q5W150 140 aa12.49□□□□□ -0.41
PNKP-216ENST00000601816 C7orf65Q6ZTY9 151 aa12.48□□□□□ -0.41
PNKP-216ENST00000601816 COL5A1-AS1Q5SY13 56 aa12.47□□□□□ -0.41
PNKP-216ENST00000601816 KRTAP9-1A8MXZ3 250 aaPredicted RBP12.45□□□□□ -0.42
PNKP-216ENST00000601816 HCG22E2RYF7 251 aa12.45□□□□□ -0.42
PNKP-216ENST00000601816 KRTAP19-1Q8IUB9 90 aa12.42□□□□□ -0.42
PNKP-216ENST00000601816 UBL5Q9BZL1 73 aa12.42□□□□□ -0.42
PNKP-216ENST00000601816 PRO0461Q9UI25 63 aa12.42□□□□□ -0.42
PNKP-216ENST00000601816 LINC00846Q9NV44 126 aa12.41□□□□□ -0.42
PNKP-216ENST00000601816 K7EP34 96 aa12.39□□□□□ -0.43
PNKP-216ENST00000601816 CXCL6P80162 114 aa12.37□□□□□ -0.43
PNKP-216ENST00000601816 FCGBPQ9Y6R7 5405 aaPredicted RBP12.34□□□□□ -0.43
PNKP-216ENST00000601816 KRTAP9-7A8MTY7 169 aa12.31□□□□□ -0.44
PNKP-216ENST00000601816 C4orf26Q17RF5 130 aa12.29□□□□□ -0.44
PNKP-216ENST00000601816 GTF2H5Q6ZYL4 71 aa12.23□□□□□ -0.45
PNKP-216ENST00000601816 KRTAP19-6Q3LI70 58 aa12.17□□□□□ -0.46
PNKP-216ENST00000601816 F8W1H4 67 aa12.15□□□□□ -0.46
PNKP-216ENST00000601816 ETDBQ3ZM63 59 aa12.12□□□□□ -0.47
PNKP-216ENST00000601816 TP53AIP1Q9HCN2 124 aa12.12□□□□□ -0.47
PNKP-216ENST00000601816 PCP4L1A6NKN8 68 aa12.08□□□□□ -0.48
PNKP-216ENST00000601816 C5orf47Q569G3 176 aa12.08□□□□□ -0.48
PNKP-216ENST00000601816 KRTAP3-1Q9BYR8 98 aa12.07□□□□□ -0.48
PNKP-216ENST00000601816 MACF1Q9UPN3 7388 aaKnown RBP12.06□□□□□ -0.48
PNKP-216ENST00000601816 C1orf64Q8NEQ6 169 aa12.06□□□□□ -0.48
PNKP-216ENST00000601816 S4R3F8 94 aa12.04□□□□□ -0.48
PNKP-216ENST00000601816 FAM236AA0A1B0GUQ0 79 aa11.96□□□□□ -0.49
PNKP-216ENST00000601816 FAM236BA0A1B0GV22 79 aa11.96□□□□□ -0.49
PNKP-216ENST00000601816 CSAG1Q6PB30 78 aa11.96□□□□□ -0.49
PNKP-216ENST00000601816 LCA10Q71F78 164 aa11.94□□□□□ -0.5
PNKP-216ENST00000601816 SYNE2Q8WXH0 6885 aaKnown RBP11.89□□□□□ -0.51
PNKP-216ENST00000601816 ACYP1P07311 99 aa11.88□□□□□ -0.51
PNKP-216ENST00000601816 CYP4F30PQ9H0H9 118 aa11.88□□□□□ -0.51
PNKP-216ENST00000601816 TRAV22A0A0B4J277 110 aa11.84□□□□□ -0.51
PNKP-216ENST00000601816 LOC101927531A0A1B0GV80 90 aa11.8□□□□□ -0.52
PNKP-216ENST00000601816 FAM240AA0A1B0GVK7 77 aa11.8□□□□□ -0.52
PNKP-216ENST00000601816 ATP5EP2Q5VTU8 51 aa11.8□□□□□ -0.52
PNKP-216ENST00000601816 HIST1H4AP62805 103 aaKnown RBP11.75□□□□□ -0.53
PNKP-216ENST00000601816 KRTAP3-3Q9BYR6 98 aa11.74□□□□□ -0.53
PNKP-216ENST00000601816 SPRR2GQ9BYE4 73 aa11.73□□□□□ -0.53
PNKP-216ENST00000601816 Q5VV11 94 aa11.71□□□□□ -0.53
PNKP-216ENST00000601816 UQCRQO14949 82 aa11.7□□□□□ -0.54
PNKP-216ENST00000601816 KLKP1Q107X0 134 aa11.7□□□□□ -0.54
PNKP-216ENST00000601816 MT1BP07438 61 aa11.69□□□□□ -0.54
PNKP-216ENST00000601816 KRTAP19-8Q3LI54 63 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms