RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 A0A1B0GV90 55 aa10.4□□□□□ -0.74
UPF1-209ENST00000600310 LINC00313P59037 77 aa10.4□□□□□ -0.74
UPF1-209ENST00000600310 A0A1B0GVX0 72 aa10.39□□□□□ -0.75
UPF1-209ENST00000600310 IGHV6-1A0A0B4J1U7 121 aa10.38□□□□□ -0.75
UPF1-209ENST00000600310 Q75L30 129 aa10.38□□□□□ -0.75
UPF1-209ENST00000600310 PCOTHQ58A44 107 aa10.37□□□□□ -0.75
UPF1-209ENST00000600310 NOTCH2NLQ7Z3S9 236 aa10.37□□□□□ -0.75
UPF1-209ENST00000600310 A8MWP4 228 aa10.36□□□□□ -0.75
UPF1-209ENST00000600310 C8orf87E5RJ46 101 aa10.36□□□□□ -0.75
UPF1-209ENST00000600310 NDUFB1O75438 58 aa10.36□□□□□ -0.75
UPF1-209ENST00000600310 C20orf166-AS1Q96NR2 134 aa10.35□□□□□ -0.75
UPF1-209ENST00000600310 KRTAP16-1A8MUX0 517 aa10.34□□□□□ -0.75
UPF1-209ENST00000600310 Q6ZVQ6 151 aa10.34□□□□□ -0.75
UPF1-209ENST00000600310 A8MUU9 505 aa10.33□□□□□ -0.76
UPF1-209ENST00000600310 IGKV3D-7A0A0C4DH55 119 aa10.32□□□□□ -0.76
UPF1-209ENST00000600310 A0A0U1RQV1 116 aa10.32□□□□□ -0.76
UPF1-209ENST00000600310 LINC00846Q9NV44 126 aa10.32□□□□□ -0.76
UPF1-209ENST00000600310 KRTAP4-1Q9BYQ7 146 aa10.31□□□□□ -0.76
UPF1-209ENST00000600310 BPY2O14599 106 aa10.29□□□□□ -0.76
UPF1-209ENST00000600310 PRR15Q8IV56 129 aa10.29□□□□□ -0.76
UPF1-209ENST00000600310 UBL5Q9BZL1 73 aa10.28□□□□□ -0.76
UPF1-209ENST00000600310 ATP11AUNQ6ZP68 121 aa10.27□□□□□ -0.77
UPF1-209ENST00000600310 C8orf17Q9NRJ1 99 aa10.26□□□□□ -0.77
UPF1-209ENST00000600310 K7EQZ3 153 aa10.23□□□□□ -0.77
UPF1-209ENST00000600310 ACYP1P07311 99 aa10.18□□□□□ -0.78
UPF1-209ENST00000600310 MMP24-AS1A0A0U1RRL7 71 aa10.17□□□□□ -0.78
UPF1-209ENST00000600310 Q8N9P0 234 aaPredicted RBP10.17□□□□□ -0.78
UPF1-209ENST00000600310 FAM240AA0A1B0GVK7 77 aa10.16□□□□□ -0.78
UPF1-209ENST00000600310 KRTAP9-2Q9BYQ4 174 aa10.16□□□□□ -0.78
UPF1-209ENST00000600310 Q8N9L7 120 aa10.15□□□□□ -0.78
UPF1-209ENST00000600310 LCE2AQ5TA79 106 aaPredicted RBP10.14□□□□□ -0.79
UPF1-209ENST00000600310 TMEM254Q8TBM7 123 aa10.13□□□□□ -0.79
UPF1-209ENST00000600310 FAT4Q6V0I7 4981 aa10.13□□□□□ -0.79
UPF1-209ENST00000600310 hDV103S1A0JD37 113 aa10.11□□□□□ -0.79
UPF1-209ENST00000600310 MRPL34Q9BQ48 92 aaKnown RBP10.11□□□□□ -0.79
UPF1-209ENST00000600310 CXCL6P80162 114 aa10.1□□□□□ -0.79
UPF1-209ENST00000600310 ZCCHC13Q8WW36 166 aaKnown RBP10.07□□□□□ -0.8
UPF1-209ENST00000600310 CASC2Q6XLA1 102 aa10.05□□□□□ -0.8
UPF1-209ENST00000600310 WFDC13Q8IUB5 93 aa10.04□□□□□ -0.8
UPF1-209ENST00000600310 KRTAP19-2Q3LHN2 52 aa10.02□□□□□ -0.81
UPF1-209ENST00000600310 HCG22E2RYF7 251 aa10.01□□□□□ -0.81
UPF1-209ENST00000600310 ATP5EP2Q5VTU8 51 aa10□□□□□ -0.81
UPF1-209ENST00000600310 J3QR89 54 aa9.99□□□□□ -0.81
UPF1-209ENST00000600310 NDUFS5O43920 106 aa9.99□□□□□ -0.81
UPF1-209ENST00000600310 LCE2CQ5TA81 110 aa9.97□□□□□ -0.81
UPF1-209ENST00000600310 LINC00643Q86TS7 51 aa9.96□□□□□ -0.82
UPF1-209ENST00000600310 KRTAP9-6A0A140TA67 174 aa9.91□□□□□ -0.82
UPF1-209ENST00000600310 SPINK7P58062 85 aa9.9□□□□□ -0.82
UPF1-209ENST00000600310 HRES1P13985 223 aa9.88□□□□□ -0.83
UPF1-209ENST00000600310 COX6B2Q6YFQ2 88 aa9.88□□□□□ -0.83
UPF1-209ENST00000600310 Q5W150 140 aa9.87□□□□□ -0.83
UPF1-209ENST00000600310 HIST1H4AP62805 103 aaKnown RBP9.86□□□□□ -0.83
UPF1-209ENST00000600310 MPLKIPQ8TAP9 179 aa9.84□□□□□ -0.83
UPF1-209ENST00000600310 TP53AIP1Q9HCN2 124 aa9.82□□□□□ -0.84
UPF1-209ENST00000600310 MT1HP80294 61 aa9.81□□□□□ -0.84
UPF1-209ENST00000600310 K7ERU9 68 aa9.79□□□□□ -0.84
UPF1-209ENST00000600310 RBM12B-AS1Q9P1G2 102 aa9.79□□□□□ -0.84
UPF1-209ENST00000600310 A0A087WVE0 104 aa9.76□□□□□ -0.85
UPF1-209ENST00000600310 IGKV2D-30A0A075B6S6 120 aa9.74□□□□□ -0.85
UPF1-209ENST00000600310 IGKV2-30P06310 120 aa9.74□□□□□ -0.85
UPF1-209ENST00000600310 C7orf65Q6ZTY9 151 aa9.74□□□□□ -0.85
UPF1-209ENST00000600310 FAM236DA0A1B0GTK5 79 aa9.73□□□□□ -0.85
UPF1-209ENST00000600310 FAM236CP0DP71 79 aa9.73□□□□□ -0.85
UPF1-209ENST00000600310 LCE2DQ5TA82 110 aaPredicted RBP9.69□□□□□ -0.86
UPF1-209ENST00000600310 UQCRQO14949 82 aa9.65□□□□□ -0.86
UPF1-209ENST00000600310 M0R2T5 61 aa9.64□□□□□ -0.87
UPF1-209ENST00000600310 TRAV22A0A0B4J277 110 aa9.63□□□□□ -0.87
UPF1-209ENST00000600310 IMUPQ9GZP8 106 aa9.63□□□□□ -0.87
UPF1-209ENST00000600310 MT-ATP8P03928 68 aa9.61□□□□□ -0.87
UPF1-209ENST00000600310 FLGP20930 4061 aaPredicted RBP9.59□□□□□ -0.87
UPF1-209ENST00000600310 FSIP2Q5CZC0 6907 aa9.58□□□□□ -0.88
UPF1-209ENST00000600310 OCR1Q9BZK8 76 aa9.57□□□□□ -0.88
UPF1-209ENST00000600310 KRTAP10-6P60371 365 aaPredicted RBP9.56□□□□□ -0.88
UPF1-209ENST00000600310 CYP4F30PQ9H0H9 118 aa9.55□□□□□ -0.88
UPF1-209ENST00000600310 CRCT1Q9UGL9 99 aa9.55□□□□□ -0.88
UPF1-209ENST00000600310 LOC101927531A0A1B0GV80 90 aa9.54□□□□□ -0.88
UPF1-209ENST00000600310 H0Y9P7 68 aa9.54□□□□□ -0.88
UPF1-209ENST00000600310 ATOX1O00244 68 aa9.54□□□□□ -0.88
UPF1-209ENST00000600310 LORP23490 312 aaPredicted RBP9.54□□□□□ -0.88
UPF1-209ENST00000600310 C4orf26Q17RF5 130 aa9.54□□□□□ -0.88
UPF1-209ENST00000600310 SCGB1A1P11684 91 aa9.51□□□□□ -0.89
UPF1-209ENST00000600310 H1FX-AS1Q4G0G2 97 aa9.51□□□□□ -0.89
UPF1-209ENST00000600310 C5orf47Q569G3 176 aa9.46□□□□□ -0.9
UPF1-209ENST00000600310 MP68P56378 58 aa9.45□□□□□ -0.9
UPF1-209ENST00000600310 C1orf64Q8NEQ6 169 aa9.44□□□□□ -0.9
UPF1-209ENST00000600310 LINC00208Q96KT6 92 aa9.43□□□□□ -0.9
UPF1-209ENST00000600310 FAM236AA0A1B0GUQ0 79 aa9.42□□□□□ -0.9
UPF1-209ENST00000600310 FAM236BA0A1B0GV22 79 aa9.42□□□□□ -0.9
UPF1-209ENST00000600310 KRTAP3-1Q9BYR8 98 aa9.42□□□□□ -0.9
UPF1-209ENST00000600310 H3BPC8 53 aa9.38□□□□□ -0.91
UPF1-209ENST00000600310 SMIM20Q8N5G0 67 aa9.36□□□□□ -0.91
UPF1-209ENST00000600310 KRTAP9-8Q9BYQ0 159 aa9.36□□□□□ -0.91
UPF1-209ENST00000600310 TRAV7A0A075B6U4 112 aa9.33□□□□□ -0.92
UPF1-209ENST00000600310 KLKP1Q107X0 134 aa9.32□□□□□ -0.92
UPF1-209ENST00000600310 S4R3F8 94 aa9.26□□□□□ -0.93
UPF1-209ENST00000600310 MT2AP02795 61 aa9.25□□□□□ -0.93
UPF1-209ENST00000600310 A8MUN3 132 aa9.21□□□□□ -0.94
UPF1-209ENST00000600310 LCA10Q71F78 164 aa9.2□□□□□ -0.94
UPF1-209ENST00000600310 MT1FP04733 61 aa9.19□□□□□ -0.94
UPF1-209ENST00000600310 SERP2Q8N6R1 65 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms