RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 A8MUU9 505 aa10.31□□□□□ -0.76
SHKBP1-221ENST00000599833 PDE6GP18545 87 aa10.31□□□□□ -0.76
SHKBP1-221ENST00000599833 PRO0461Q9UI25 63 aa10.31□□□□□ -0.76
SHKBP1-221ENST00000599833 A0A1B0GW54 56 aa10.3□□□□□ -0.76
SHKBP1-221ENST00000599833 FLGP20930 4061 aaPredicted RBP10.29□□□□□ -0.76
SHKBP1-221ENST00000599833 LCE2CQ5TA81 110 aa10.29□□□□□ -0.76
SHKBP1-221ENST00000599833 K7EP34 96 aa10.28□□□□□ -0.76
SHKBP1-221ENST00000599833 C21orf62-AS1Q17RA5 79 aa10.28□□□□□ -0.76
SHKBP1-221ENST00000599833 LINC00313P59037 77 aa10.24□□□□□ -0.77
SHKBP1-221ENST00000599833 A0A1B0GVX0 72 aa10.23□□□□□ -0.77
SHKBP1-221ENST00000599833 IGHV6-1A0A0B4J1U7 121 aa10.21□□□□□ -0.77
SHKBP1-221ENST00000599833 J3KT08 172 aa10.21□□□□□ -0.77
SHKBP1-221ENST00000599833 ATP11AUNQ6ZP68 121 aa10.17□□□□□ -0.78
SHKBP1-221ENST00000599833 C8orf87E5RJ46 101 aa10.16□□□□□ -0.78
SHKBP1-221ENST00000599833 IGKV3D-7A0A0C4DH55 119 aa10.15□□□□□ -0.78
SHKBP1-221ENST00000599833 A8MWP4 228 aa10.14□□□□□ -0.79
SHKBP1-221ENST00000599833 NREPQ16612 68 aa10.12□□□□□ -0.79
SHKBP1-221ENST00000599833 GTF2H5Q6ZYL4 71 aa10.09□□□□□ -0.79
SHKBP1-221ENST00000599833 C8orf17Q9NRJ1 99 aa10.08□□□□□ -0.8
SHKBP1-221ENST00000599833 MT1HP80294 61 aa10.07□□□□□ -0.8
SHKBP1-221ENST00000599833 PRR15Q8IV56 129 aa10.07□□□□□ -0.8
SHKBP1-221ENST00000599833 Q8N9P0 234 aaPredicted RBP10.06□□□□□ -0.8
SHKBP1-221ENST00000599833 F8W1H4 67 aa10.05□□□□□ -0.8
SHKBP1-221ENST00000599833 NDUFB1O75438 58 aa10.05□□□□□ -0.8
SHKBP1-221ENST00000599833 Q6ZVQ6 151 aa10.05□□□□□ -0.8
SHKBP1-221ENST00000599833 MMP24-AS1A0A0U1RRL7 71 aa10.02□□□□□ -0.81
SHKBP1-221ENST00000599833 K7EQZ3 153 aa10.02□□□□□ -0.81
SHKBP1-221ENST00000599833 LINC00846Q9NV44 126 aa10.02□□□□□ -0.81
SHKBP1-221ENST00000599833 ETDBQ3ZM63 59 aa10□□□□□ -0.81
SHKBP1-221ENST00000599833 KRTAP9-2Q9BYQ4 174 aa9.97□□□□□ -0.81
SHKBP1-221ENST00000599833 BPY2O14599 106 aa9.96□□□□□ -0.82
SHKBP1-221ENST00000599833 ZCCHC13Q8WW36 166 aaKnown RBP9.96□□□□□ -0.82
SHKBP1-221ENST00000599833 MPLKIPQ8TAP9 179 aa9.94□□□□□ -0.82
SHKBP1-221ENST00000599833 HRES1P13985 223 aa9.93□□□□□ -0.82
SHKBP1-221ENST00000599833 Q8N9L7 120 aa9.93□□□□□ -0.82
SHKBP1-221ENST00000599833 TMEM254Q8TBM7 123 aa9.93□□□□□ -0.82
SHKBP1-221ENST00000599833 MRPL34Q9BQ48 92 aaKnown RBP9.91□□□□□ -0.82
SHKBP1-221ENST00000599833 hDV103S1A0JD37 113 aa9.88□□□□□ -0.83
SHKBP1-221ENST00000599833 COX6B2Q6YFQ2 88 aa9.88□□□□□ -0.83
SHKBP1-221ENST00000599833 UBL5Q9BZL1 73 aa9.87□□□□□ -0.83
SHKBP1-221ENST00000599833 LORP23490 312 aaPredicted RBP9.84□□□□□ -0.83
SHKBP1-221ENST00000599833 A0A1B0GV90 55 aa9.83□□□□□ -0.84
SHKBP1-221ENST00000599833 KRTAP10-6P60371 365 aaPredicted RBP9.82□□□□□ -0.84
SHKBP1-221ENST00000599833 SPINK7P58062 85 aa9.81□□□□□ -0.84
SHKBP1-221ENST00000599833 WFDC13Q8IUB5 93 aa9.8□□□□□ -0.84
SHKBP1-221ENST00000599833 CASC2Q6XLA1 102 aa9.78□□□□□ -0.84
SHKBP1-221ENST00000599833 Q5W150 140 aa9.76□□□□□ -0.85
SHKBP1-221ENST00000599833 CXCL6P80162 114 aa9.75□□□□□ -0.85
SHKBP1-221ENST00000599833 FAM240AA0A1B0GVK7 77 aa9.73□□□□□ -0.85
SHKBP1-221ENST00000599833 HCG22E2RYF7 251 aa9.73□□□□□ -0.85
SHKBP1-221ENST00000599833 KRTAP9-6A0A140TA67 174 aa9.72□□□□□ -0.85
SHKBP1-221ENST00000599833 M0R2T5 61 aa9.71□□□□□ -0.86
SHKBP1-221ENST00000599833 NDUFS5O43920 106 aa9.71□□□□□ -0.86
SHKBP1-221ENST00000599833 ACYP1P07311 99 aa9.69□□□□□ -0.86
SHKBP1-221ENST00000599833 RBM12B-AS1Q9P1G2 102 aa9.69□□□□□ -0.86
SHKBP1-221ENST00000599833 LCE2DQ5TA82 110 aaPredicted RBP9.67□□□□□ -0.86
SHKBP1-221ENST00000599833 FAM236DA0A1B0GTK5 79 aa9.64□□□□□ -0.87
SHKBP1-221ENST00000599833 FAM236CP0DP71 79 aa9.64□□□□□ -0.87
SHKBP1-221ENST00000599833 KRTAP9-8Q9BYQ0 159 aa9.61□□□□□ -0.87
SHKBP1-221ENST00000599833 C7orf65Q6ZTY9 151 aa9.57□□□□□ -0.88
SHKBP1-221ENST00000599833 IGKV2D-30A0A075B6S6 120 aa9.56□□□□□ -0.88
SHKBP1-221ENST00000599833 IGKV2-30P06310 120 aa9.56□□□□□ -0.88
SHKBP1-221ENST00000599833 ATP5EP2Q5VTU8 51 aa9.56□□□□□ -0.88
SHKBP1-221ENST00000599833 FSIP2Q5CZC0 6907 aa9.53□□□□□ -0.88
SHKBP1-221ENST00000599833 LINC00643Q86TS7 51 aa9.5□□□□□ -0.89
SHKBP1-221ENST00000599833 TP53AIP1Q9HCN2 124 aa9.5□□□□□ -0.89
SHKBP1-221ENST00000599833 MT2AP02795 61 aa9.47□□□□□ -0.89
SHKBP1-221ENST00000599833 A0A087WVE0 104 aa9.44□□□□□ -0.9
SHKBP1-221ENST00000599833 HIST1H4AP62805 103 aaKnown RBP9.43□□□□□ -0.9
SHKBP1-221ENST00000599833 USH2AO75445 5202 aa9.41□□□□□ -0.9
SHKBP1-221ENST00000599833 MT1FP04733 61 aa9.41□□□□□ -0.9
SHKBP1-221ENST00000599833 C4orf26Q17RF5 130 aa9.41□□□□□ -0.9
SHKBP1-221ENST00000599833 H1FX-AS1Q4G0G2 97 aa9.41□□□□□ -0.9
SHKBP1-221ENST00000599833 KRTAP3-1Q9BYR8 98 aa9.41□□□□□ -0.9
SHKBP1-221ENST00000599833 CRCT1Q9UGL9 99 aa9.36□□□□□ -0.91
SHKBP1-221ENST00000599833 TRAV22A0A0B4J277 110 aa9.35□□□□□ -0.91
SHKBP1-221ENST00000599833 J3QR89 54 aa9.34□□□□□ -0.91
SHKBP1-221ENST00000599833 CYP4F30PQ9H0H9 118 aa9.33□□□□□ -0.92
SHKBP1-221ENST00000599833 UQCRQO14949 82 aa9.3□□□□□ -0.92
SHKBP1-221ENST00000599833 KRTAP9-3Q9BYQ3 159 aa9.3□□□□□ -0.92
SHKBP1-221ENST00000599833 SSPOA2VEC9 5147 aa9.28□□□□□ -0.92
SHKBP1-221ENST00000599833 OCR1Q9BZK8 76 aa9.27□□□□□ -0.93
SHKBP1-221ENST00000599833 LOC101927531A0A1B0GV80 90 aa9.26□□□□□ -0.93
SHKBP1-221ENST00000599833 C1orf64Q8NEQ6 169 aa9.25□□□□□ -0.93
SHKBP1-221ENST00000599833 H0Y9P7 68 aa9.24□□□□□ -0.93
SHKBP1-221ENST00000599833 KRTAP10-10P60014 251 aa9.23□□□□□ -0.93
SHKBP1-221ENST00000599833 LCE2BO14633 110 aa9.21□□□□□ -0.94
SHKBP1-221ENST00000599833 ATOX1O00244 68 aa9.19□□□□□ -0.94
SHKBP1-221ENST00000599833 K7ERU9 68 aa9.15□□□□□ -0.94
SHKBP1-221ENST00000599833 MT-ATP8P03928 68 aa9.15□□□□□ -0.94
SHKBP1-221ENST00000599833 LCA10Q71F78 164 aa9.14□□□□□ -0.95
SHKBP1-221ENST00000599833 KRTAP3-3Q9BYR6 98 aa9.14□□□□□ -0.95
SHKBP1-221ENST00000599833 S4R3F8 94 aa9.14□□□□□ -0.95
SHKBP1-221ENST00000599833 KLKP1Q107X0 134 aa9.12□□□□□ -0.95
SHKBP1-221ENST00000599833 IMUPQ9GZP8 106 aa9.11□□□□□ -0.95
SHKBP1-221ENST00000599833 C5orf47Q569G3 176 aa9.1□□□□□ -0.95
SHKBP1-221ENST00000599833 LINC00208Q96KT6 92 aa9.1□□□□□ -0.95
SHKBP1-221ENST00000599833 MP68P56378 58 aa9.03□□□□□ -0.96
SHKBP1-221ENST00000599833 H3BPC8 53 aa9□□□□□ -0.97
SHKBP1-221ENST00000599833 CSAG1Q6PB30 78 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 124.5 ms