RNA–Protein interactions for RNA: ENST00000599454.5

PNKP-212, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 529 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-212ENST00000599454 A0A1B0GVX0 72 aa10.28□□□□□ -0.76
PNKP-212ENST00000599454 ZCCHC13Q8WW36 166 aaKnown RBP10.27□□□□□ -0.77
PNKP-212ENST00000599454 FXYD2P54710 66 aa10.25□□□□□ -0.77
PNKP-212ENST00000599454 SPINK7P58062 85 aa10.25□□□□□ -0.77
PNKP-212ENST00000599454 SYNE2Q8WXH0 6885 aaKnown RBP10.25□□□□□ -0.77
PNKP-212ENST00000599454 A8MWP4 228 aa10.24□□□□□ -0.77
PNKP-212ENST00000599454 UBE2V1Q13404 147 aa10.23□□□□□ -0.77
PNKP-212ENST00000599454 VAMP8Q9BV40 100 aa10.23□□□□□ -0.77
PNKP-212ENST00000599454 S100A1P23297 94 aa10.22□□□□□ -0.77
PNKP-212ENST00000599454 COX6CP09669 75 aa10.2□□□□□ -0.78
PNKP-212ENST00000599454 PSMB2P49721 201 aa10.2□□□□□ -0.78
PNKP-212ENST00000599454 J3KT08 172 aa10.18□□□□□ -0.78
PNKP-212ENST00000599454 C21orf62-AS1Q17RA5 79 aa10.17□□□□□ -0.78
PNKP-212ENST00000599454 VPS25Q9BRG1 176 aa10.17□□□□□ -0.78
PNKP-212ENST00000599454 RBM3P98179 157 aaKnown RBP10.14□□□□□ -0.79
PNKP-212ENST00000599454 Q8N9P0 234 aaPredicted RBP10.14□□□□□ -0.79
PNKP-212ENST00000599454 DSCR8Q96T75 97 aa10.13□□□□□ -0.79
PNKP-212ENST00000599454 WFDC13Q8IUB5 93 aa10.12□□□□□ -0.79
PNKP-212ENST00000599454 K7ERJ3 54 aa10.1□□□□□ -0.79
PNKP-212ENST00000599454 NDUFB1O75438 58 aa10.1□□□□□ -0.79
PNKP-212ENST00000599454 HSD52Q0P140 79 aa10.1□□□□□ -0.79
PNKP-212ENST00000599454 KRTAP6-3Q3LI67 103 aa10.07□□□□□ -0.8
PNKP-212ENST00000599454 LYRM7Q5U5X0 104 aa10.06□□□□□ -0.8
PNKP-212ENST00000599454 C9JAW5 83 aa10.05□□□□□ -0.8
PNKP-212ENST00000599454 Q6ZQT0 140 aa10.05□□□□□ -0.8
PNKP-212ENST00000599454 C8orf17Q9NRJ1 99 aa10.03□□□□□ -0.8
PNKP-212ENST00000599454 SCGB1C2P0DMR2 95 aa9.99□□□□□ -0.81
PNKP-212ENST00000599454 A0A1B0GW54 56 aa9.96□□□□□ -0.82
PNKP-212ENST00000599454 BAALC-AS2P0C853 105 aa9.96□□□□□ -0.82
PNKP-212ENST00000599454 IGKV3D-7A0A0C4DH55 119 aa9.95□□□□□ -0.82
PNKP-212ENST00000599454 H1FX-AS1Q4G0G2 97 aa9.95□□□□□ -0.82
PNKP-212ENST00000599454 Q6ZVQ6 151 aa9.95□□□□□ -0.82
PNKP-212ENST00000599454 JMJD7-PLA2G4BH0Y9G9 81 aa9.89□□□□□ -0.83
PNKP-212ENST00000599454 LOC110117498A0A087WWA1 95 aa9.87□□□□□ -0.83
PNKP-212ENST00000599454 PRR15Q8IV56 129 aa9.87□□□□□ -0.83
PNKP-212ENST00000599454 UQCR10Q9UDW1 63 aa9.87□□□□□ -0.83
PNKP-212ENST00000599454 PDE6GP18545 87 aa9.86□□□□□ -0.83
PNKP-212ENST00000599454 PYY3Q5JQD4 70 aa9.86□□□□□ -0.83
PNKP-212ENST00000599454 TMEM254Q8TBM7 123 aa9.85□□□□□ -0.83
PNKP-212ENST00000599454 MRPL34Q9BQ48 92 aaKnown RBP9.85□□□□□ -0.83
PNKP-212ENST00000599454 MMP24-AS1A0A0U1RRL7 71 aa9.81□□□□□ -0.84
PNKP-212ENST00000599454 ATXN8Q156A1 80 aa9.79□□□□□ -0.84
PNKP-212ENST00000599454 NREPQ16612 68 aa9.78□□□□□ -0.84
PNKP-212ENST00000599454 hDV103S1A0JD37 113 aa9.75□□□□□ -0.85
PNKP-212ENST00000599454 NDUFS5O43920 106 aa9.75□□□□□ -0.85
PNKP-212ENST00000599454 C14orf132Q9NPU4 83 aa9.74□□□□□ -0.85
PNKP-212ENST00000599454 IGKV2D-30A0A075B6S6 120 aa9.73□□□□□ -0.85
PNKP-212ENST00000599454 IGKV2-30P06310 120 aa9.73□□□□□ -0.85
PNKP-212ENST00000599454 C7orf65Q6ZTY9 151 aa9.73□□□□□ -0.85
PNKP-212ENST00000599454 NEBP20929 6669 aa9.7□□□□□ -0.86
PNKP-212ENST00000599454 K7EQZ3 153 aa9.68□□□□□ -0.86
PNKP-212ENST00000599454 A6NN06 94 aa9.67□□□□□ -0.86
PNKP-212ENST00000599454 Q5W150 140 aa9.64□□□□□ -0.87
PNKP-212ENST00000599454 NAA38Q9BRA0 125 aaKnown RBP9.63□□□□□ -0.87
PNKP-212ENST00000599454 FAM236AA0A1B0GUQ0 79 aa9.62□□□□□ -0.87
PNKP-212ENST00000599454 FAM236BA0A1B0GV22 79 aa9.62□□□□□ -0.87
PNKP-212ENST00000599454 M0R143 59 aa9.61□□□□□ -0.87
PNKP-212ENST00000599454 C4orf26Q17RF5 130 aa9.59□□□□□ -0.87
PNKP-212ENST00000599454 Q5VV11 94 aa9.59□□□□□ -0.87
PNKP-212ENST00000599454 MT1BP07438 61 aa9.58□□□□□ -0.88
PNKP-212ENST00000599454 BPY2O14599 106 aa9.57□□□□□ -0.88
PNKP-212ENST00000599454 C5orf47Q569G3 176 aa9.57□□□□□ -0.88
PNKP-212ENST00000599454 MUC12Q9UKN1 5478 aa9.54□□□□□ -0.88
PNKP-212ENST00000599454 KRTAP19-8Q3LI54 63 aa9.54□□□□□ -0.88
PNKP-212ENST00000599454 SPRR2GQ9BYE4 73 aa9.53□□□□□ -0.88
PNKP-212ENST00000599454 HCG22E2RYF7 251 aa9.52□□□□□ -0.89
PNKP-212ENST00000599454 KRTAP20-1Q3LI63 56 aa9.51□□□□□ -0.89
PNKP-212ENST00000599454 CASC2Q6XLA1 102 aa9.51□□□□□ -0.89
PNKP-212ENST00000599454 CXCL6P80162 114 aa9.5□□□□□ -0.89
PNKP-212ENST00000599454 CSAG1Q6PB30 78 aa9.49□□□□□ -0.89
PNKP-212ENST00000599454 KRTAP10-5P60370 271 aa9.48□□□□□ -0.89
PNKP-212ENST00000599454 S4R3F8 94 aa9.48□□□□□ -0.89
PNKP-212ENST00000599454 H3BT86 120 aa9.45□□□□□ -0.9
PNKP-212ENST00000599454 KRTAP5-9P26371 169 aa9.44□□□□□ -0.9
PNKP-212ENST00000599454 Q8N9L7 120 aa9.43□□□□□ -0.9
PNKP-212ENST00000599454 KRTAP3-1Q9BYR8 98 aa9.43□□□□□ -0.9
PNKP-212ENST00000599454 TMA7Q9Y2S6 64 aaKnown RBP9.4□□□□□ -0.9
PNKP-212ENST00000599454 LCA10Q71F78 164 aa9.39□□□□□ -0.91
PNKP-212ENST00000599454 KLKP1Q107X0 134 aa9.38□□□□□ -0.91
PNKP-212ENST00000599454 C1orf64Q8NEQ6 169 aa9.38□□□□□ -0.91
PNKP-212ENST00000599454 TSTD3H0UI37 97 aa9.35□□□□□ -0.91
PNKP-212ENST00000599454 KMT2DO14686 5537 aa9.27□□□□□ -0.92
PNKP-212ENST00000599454 C9orf118A6NHY6 69 aa9.27□□□□□ -0.93
PNKP-212ENST00000599454 BATFQ16520 125 aa9.26□□□□□ -0.93
PNKP-212ENST00000599454 IMUPQ9GZP8 106 aa9.26□□□□□ -0.93
PNKP-212ENST00000599454 CRIPTQ9P021 101 aa9.26□□□□□ -0.93
PNKP-212ENST00000599454 A0A1W2PPM0 123 aa9.24□□□□□ -0.93
PNKP-212ENST00000599454 UBL5Q9BZL1 73 aa9.22□□□□□ -0.93
PNKP-212ENST00000599454 KRTAP3-3Q9BYR6 98 aa9.21□□□□□ -0.94
PNKP-212ENST00000599454 TP53AIP1Q9HCN2 124 aa9.21□□□□□ -0.94
PNKP-212ENST00000599454 MDN1Q9NU22 5596 aa9.19□□□□□ -0.94
PNKP-212ENST00000599454 SMIM6P0DI80 62 aa9.19□□□□□ -0.94
PNKP-212ENST00000599454 TAX1BP3O14907 124 aa9.17□□□□□ -0.94
PNKP-212ENST00000599454 KRTAP2-3P0C7H8 128 aa9.17□□□□□ -0.94
PNKP-212ENST00000599454 SMCPP49901 116 aaPredicted RBP9.17□□□□□ -0.94
PNKP-212ENST00000599454 KRTAP2-4Q9BYR9 128 aa9.17□□□□□ -0.94
PNKP-212ENST00000599454 SPCS1Q9Y6A9 102 aa9.08□□□□□ -0.96
PNKP-212ENST00000599454 CYP4F30PQ9H0H9 118 aa9.06□□□□□ -0.96
PNKP-212ENST00000599454 SPRR2FQ96RM1 72 aa9.03□□□□□ -0.96
PNKP-212ENST00000599454 A0A087WVE0 104 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 163.4 ms