RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 NOTCH2NLQ7Z3S9 236 aa8.41□□□□□ -1.06
TRIM28-213ENST00000598355 H3BT86 120 aa8.4□□□□□ -1.06
TRIM28-213ENST00000598355 C14orf132Q9NPU4 83 aa8.39□□□□□ -1.07
TRIM28-213ENST00000598355 A0A1B0GVX0 72 aa8.38□□□□□ -1.07
TRIM28-213ENST00000598355 J3KT08 172 aa8.38□□□□□ -1.07
TRIM28-213ENST00000598355 FLGP20930 4061 aaPredicted RBP8.36□□□□□ -1.07
TRIM28-213ENST00000598355 IGHV6-1A0A0B4J1U7 121 aa8.36□□□□□ -1.07
TRIM28-213ENST00000598355 C8orf87E5RJ46 101 aa8.36□□□□□ -1.07
TRIM28-213ENST00000598355 KRTAP9-2Q9BYQ4 174 aa8.34□□□□□ -1.07
TRIM28-213ENST00000598355 MTURNQ8N3F0 131 aa8.32□□□□□ -1.08
TRIM28-213ENST00000598355 A8MWP4 228 aa8.29□□□□□ -1.08
TRIM28-213ENST00000598355 COL5A1-AS1Q5SY13 56 aa8.29□□□□□ -1.08
TRIM28-213ENST00000598355 SPCS1Q9Y6A9 102 aa8.29□□□□□ -1.08
TRIM28-213ENST00000598355 COX6B2Q6YFQ2 88 aa8.28□□□□□ -1.08
TRIM28-213ENST00000598355 IGKV3D-7A0A0C4DH55 119 aa8.26□□□□□ -1.09
TRIM28-213ENST00000598355 NDUFB1O75438 58 aa8.26□□□□□ -1.09
TRIM28-213ENST00000598355 LORP23490 312 aaPredicted RBP8.25□□□□□ -1.09
TRIM28-213ENST00000598355 SMCPP49901 116 aaPredicted RBP8.25□□□□□ -1.09
TRIM28-213ENST00000598355 Q8N9P0 234 aaPredicted RBP8.25□□□□□ -1.09
TRIM28-213ENST00000598355 C8orf17Q9NRJ1 99 aa8.24□□□□□ -1.09
TRIM28-213ENST00000598355 KRTAP10-6P60371 365 aaPredicted RBP8.23□□□□□ -1.09
TRIM28-213ENST00000598355 NREPQ16612 68 aa8.23□□□□□ -1.09
TRIM28-213ENST00000598355 PRO0461Q9UI25 63 aa8.23□□□□□ -1.09
TRIM28-213ENST00000598355 PRR15Q8IV56 129 aa8.22□□□□□ -1.09
TRIM28-213ENST00000598355 MPLKIPQ8TAP9 179 aa8.21□□□□□ -1.1
TRIM28-213ENST00000598355 K7EP34 96 aa8.2□□□□□ -1.1
TRIM28-213ENST00000598355 LCE2DQ5TA82 110 aaPredicted RBP8.2□□□□□ -1.1
TRIM28-213ENST00000598355 HRES1P13985 223 aa8.19□□□□□ -1.1
TRIM28-213ENST00000598355 ZCCHC13Q8WW36 166 aaKnown RBP8.19□□□□□ -1.1
TRIM28-213ENST00000598355 MMP24-AS1A0A0U1RRL7 71 aa8.17□□□□□ -1.1
TRIM28-213ENST00000598355 Q6ZVQ6 151 aa8.16□□□□□ -1.1
TRIM28-213ENST00000598355 K7EQZ3 153 aa8.15□□□□□ -1.1
TRIM28-213ENST00000598355 M0R2T5 61 aa8.15□□□□□ -1.1
TRIM28-213ENST00000598355 TMEM254Q8TBM7 123 aa8.13□□□□□ -1.11
TRIM28-213ENST00000598355 PCP4L1A6NKN8 68 aa8.1□□□□□ -1.11
TRIM28-213ENST00000598355 BPY2O14599 106 aa8.1□□□□□ -1.11
TRIM28-213ENST00000598355 MRPL34Q9BQ48 92 aaKnown RBP8.1□□□□□ -1.11
TRIM28-213ENST00000598355 GTF2H5Q6ZYL4 71 aa8.08□□□□□ -1.12
TRIM28-213ENST00000598355 hDV103S1A0JD37 113 aa8.07□□□□□ -1.12
TRIM28-213ENST00000598355 SPINK7P58062 85 aa8.07□□□□□ -1.12
TRIM28-213ENST00000598355 RBM12B-AS1Q9P1G2 102 aa8.07□□□□□ -1.12
TRIM28-213ENST00000598355 LINC00846Q9NV44 126 aa8.06□□□□□ -1.12
TRIM28-213ENST00000598355 F8W1H4 67 aa8.04□□□□□ -1.12
TRIM28-213ENST00000598355 FAM236DA0A1B0GTK5 79 aa8.03□□□□□ -1.12
TRIM28-213ENST00000598355 FAM236CP0DP71 79 aa8.03□□□□□ -1.12
TRIM28-213ENST00000598355 Q8N9L7 120 aa8.02□□□□□ -1.13
TRIM28-213ENST00000598355 UBL5Q9BZL1 73 aa8.02□□□□□ -1.13
TRIM28-213ENST00000598355 KRTAP9-6A0A140TA67 174 aa8□□□□□ -1.13
TRIM28-213ENST00000598355 KRTAP9-8Q9BYQ0 159 aa8□□□□□ -1.13
TRIM28-213ENST00000598355 ETDBQ3ZM63 59 aa7.98□□□□□ -1.13
TRIM28-213ENST00000598355 CASC2Q6XLA1 102 aa7.97□□□□□ -1.13
TRIM28-213ENST00000598355 WFDC13Q8IUB5 93 aa7.96□□□□□ -1.14
TRIM28-213ENST00000598355 NDUFS5O43920 106 aa7.95□□□□□ -1.14
TRIM28-213ENST00000598355 Q5W150 140 aa7.93□□□□□ -1.14
TRIM28-213ENST00000598355 HCG22E2RYF7 251 aa7.91□□□□□ -1.14
TRIM28-213ENST00000598355 CXCL6P80162 114 aa7.9□□□□□ -1.14
TRIM28-213ENST00000598355 CRCT1Q9UGL9 99 aa7.89□□□□□ -1.15
TRIM28-213ENST00000598355 MT2AP02795 61 aa7.88□□□□□ -1.15
TRIM28-213ENST00000598355 C7orf65Q6ZTY9 151 aa7.88□□□□□ -1.15
TRIM28-213ENST00000598355 FSIP2Q5CZC0 6907 aa7.84□□□□□ -1.15
TRIM28-213ENST00000598355 FAM240AA0A1B0GVK7 77 aa7.84□□□□□ -1.15
TRIM28-213ENST00000598355 IGKV2D-30A0A075B6S6 120 aa7.83□□□□□ -1.16
TRIM28-213ENST00000598355 IGKV2-30P06310 120 aa7.83□□□□□ -1.16
TRIM28-213ENST00000598355 MT1FP04733 61 aa7.82□□□□□ -1.16
TRIM28-213ENST00000598355 ACYP1P07311 99 aa7.81□□□□□ -1.16
TRIM28-213ENST00000598355 H1FX-AS1Q4G0G2 97 aa7.78□□□□□ -1.16
TRIM28-213ENST00000598355 TP53AIP1Q9HCN2 124 aa7.77□□□□□ -1.17
TRIM28-213ENST00000598355 ATP5EP2Q5VTU8 51 aa7.75□□□□□ -1.17
TRIM28-213ENST00000598355 KRTAP9-3Q9BYQ3 159 aa7.74□□□□□ -1.17
TRIM28-213ENST00000598355 A0A1B0GV90 55 aa7.71□□□□□ -1.18
TRIM28-213ENST00000598355 KRTAP10-10P60014 251 aa7.71□□□□□ -1.18
TRIM28-213ENST00000598355 C4orf26Q17RF5 130 aa7.71□□□□□ -1.18
TRIM28-213ENST00000598355 LCE2BO14633 110 aa7.67□□□□□ -1.18
TRIM28-213ENST00000598355 KRTAP3-1Q9BYR8 98 aa7.66□□□□□ -1.18
TRIM28-213ENST00000598355 USH2AO75445 5202 aa7.65□□□□□ -1.19
TRIM28-213ENST00000598355 LINC00643Q86TS7 51 aa7.63□□□□□ -1.19
TRIM28-213ENST00000598355 TRAV22A0A0B4J277 110 aa7.62□□□□□ -1.19
TRIM28-213ENST00000598355 HIST1H4AP62805 103 aaKnown RBP7.6□□□□□ -1.19
TRIM28-213ENST00000598355 CYP4F30PQ9H0H9 118 aa7.59□□□□□ -1.19
TRIM28-213ENST00000598355 C1orf64Q8NEQ6 169 aa7.58□□□□□ -1.2
TRIM28-213ENST00000598355 A0A087WVE0 104 aa7.56□□□□□ -1.2
TRIM28-213ENST00000598355 LOC101927531A0A1B0GV80 90 aa7.56□□□□□ -1.2
TRIM28-213ENST00000598355 SSPOA2VEC9 5147 aa7.55□□□□□ -1.2
TRIM28-213ENST00000598355 UQCRQO14949 82 aa7.55□□□□□ -1.2
TRIM28-213ENST00000598355 S4R3F8 94 aa7.53□□□□□ -1.2
TRIM28-213ENST00000598355 ATOX1O00244 68 aa7.5□□□□□ -1.21
TRIM28-213ENST00000598355 LCA10Q71F78 164 aa7.5□□□□□ -1.21
TRIM28-213ENST00000598355 H0Y9P7 68 aa7.49□□□□□ -1.21
TRIM28-213ENST00000598355 C5orf47Q569G3 176 aa7.49□□□□□ -1.21
TRIM28-213ENST00000598355 J3QR89 54 aa7.48□□□□□ -1.21
TRIM28-213ENST00000598355 OCR1Q9BZK8 76 aa7.47□□□□□ -1.21
TRIM28-213ENST00000598355 KRTAP19-1Q8IUB9 90 aa7.46□□□□□ -1.22
TRIM28-213ENST00000598355 KRTAP3-3Q9BYR6 98 aa7.45□□□□□ -1.22
TRIM28-213ENST00000598355 CSAG1Q6PB30 78 aa7.44□□□□□ -1.22
TRIM28-213ENST00000598355 FCGBPQ9Y6R7 5405 aaPredicted RBP7.41□□□□□ -1.22
TRIM28-213ENST00000598355 KRTAP19-6Q3LI70 58 aa7.4□□□□□ -1.22
TRIM28-213ENST00000598355 LINC00208Q96KT6 92 aa7.37□□□□□ -1.23
TRIM28-213ENST00000598355 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.36□□□□□ -1.23
TRIM28-213ENST00000598355 KLKP1Q107X0 134 aa7.35□□□□□ -1.23
TRIM28-213ENST00000598355 A8MUN3 132 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 152.5 ms