RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 CCDC179H3BU77 68 aa6.43□□□□□ -1.38
LIG3-213ENST00000590630 KRTAP3-3Q9BYR6 98 aa6.42□□□□□ -1.38
LIG3-213ENST00000590630 KRTAP3-2Q9BYR7 98 aa6.42□□□□□ -1.38
LIG3-213ENST00000590630 RPL37P61927 97 aaKnown RBP6.41□□□□□ -1.38
LIG3-213ENST00000590630 PCOTHQ58A44 107 aa6.41□□□□□ -1.38
LIG3-213ENST00000590630 OBSCN-AS1Q96MR7 158 aa6.41□□□□□ -1.38
LIG3-213ENST00000590630 LOC110117498A0A087WWA1 95 aa6.39□□□□□ -1.39
LIG3-213ENST00000590630 PDE6GP18545 87 aa6.39□□□□□ -1.39
LIG3-213ENST00000590630 SMIM20Q8N5G0 67 aa6.39□□□□□ -1.39
LIG3-213ENST00000590630 KRTAP4-1Q9BYQ7 146 aa6.39□□□□□ -1.39
LIG3-213ENST00000590630 IGKV4-1P06312 121 aa6.38□□□□□ -1.39
LIG3-213ENST00000590630 LINC00643Q86TS7 51 aa6.38□□□□□ -1.39
LIG3-213ENST00000590630 LINC00472Q9H8W2 130 aa6.38□□□□□ -1.39
LIG3-213ENST00000590630 FAT4Q6V0I7 4981 aa6.38□□□□□ -1.39
LIG3-213ENST00000590630 A0A1B0GW54 56 aa6.37□□□□□ -1.39
LIG3-213ENST00000590630 UQCRQO14949 82 aa6.37□□□□□ -1.39
LIG3-213ENST00000590630 Q6ZQT0 140 aa6.37□□□□□ -1.39
LIG3-213ENST00000590630 Q75L30 129 aa6.36□□□□□ -1.39
LIG3-213ENST00000590630 C14orf132Q9NPU4 83 aa6.35□□□□□ -1.39
LIG3-213ENST00000590630 RPS28P62857 69 aaKnown RBP6.34□□□□□ -1.39
LIG3-213ENST00000590630 DEFB116Q30KQ4 102 aa6.33□□□□□ -1.4
LIG3-213ENST00000590630 J3KT08 172 aa6.32□□□□□ -1.4
LIG3-213ENST00000590630 LINC00313P59037 77 aa6.32□□□□□ -1.4
LIG3-213ENST00000590630 ATP11AUNQ6ZP68 121 aa6.32□□□□□ -1.4
LIG3-213ENST00000590630 C20orf166-AS1Q96NR2 134 aa6.32□□□□□ -1.4
LIG3-213ENST00000590630 FAM236AA0A1B0GUQ0 79 aa6.31□□□□□ -1.4
LIG3-213ENST00000590630 FAM236BA0A1B0GV22 79 aa6.31□□□□□ -1.4
LIG3-213ENST00000590630 ATOX1O00244 68 aa6.31□□□□□ -1.4
LIG3-213ENST00000590630 DSCR10P59022 87 aa6.31□□□□□ -1.4
LIG3-213ENST00000590630 A8MUU9 505 aa6.3□□□□□ -1.4
LIG3-213ENST00000590630 COX7CP15954 63 aa6.3□□□□□ -1.4
LIG3-213ENST00000590630 LCE2AQ5TA79 106 aaPredicted RBP6.3□□□□□ -1.4
LIG3-213ENST00000590630 IGHV6-1A0A0B4J1U7 121 aa6.29□□□□□ -1.4
LIG3-213ENST00000590630 HIST1H4AP62805 103 aaKnown RBP6.29□□□□□ -1.4
LIG3-213ENST00000590630 A0A1B0GVX0 72 aa6.28□□□□□ -1.4
LIG3-213ENST00000590630 C5orf47Q569G3 176 aa6.28□□□□□ -1.4
LIG3-213ENST00000590630 KRTAP16-1A8MUX0 517 aa6.27□□□□□ -1.41
LIG3-213ENST00000590630 C8orf87E5RJ46 101 aa6.27□□□□□ -1.41
LIG3-213ENST00000590630 NDUFB1O75438 58 aa6.26□□□□□ -1.41
LIG3-213ENST00000590630 NOTCH2NLQ7Z3S9 236 aa6.26□□□□□ -1.41
LIG3-213ENST00000590630 TMEM258P61165 79 aa6.25□□□□□ -1.41
LIG3-213ENST00000590630 NREPQ16612 68 aa6.24□□□□□ -1.41
LIG3-213ENST00000590630 A8MWP4 228 aa6.23□□□□□ -1.41
LIG3-213ENST00000590630 KRTAP19-2Q3LHN2 52 aa6.23□□□□□ -1.41
LIG3-213ENST00000590630 SERP2Q8N6R1 65 aa6.22□□□□□ -1.41
LIG3-213ENST00000590630 LCE2CQ5TA81 110 aa6.21□□□□□ -1.42
LIG3-213ENST00000590630 ATP5EP2Q5VTU8 51 aa6.21□□□□□ -1.42
LIG3-213ENST00000590630 IGKV3D-7A0A0C4DH55 119 aa6.19□□□□□ -1.42
LIG3-213ENST00000590630 PRR15Q8IV56 129 aa6.18□□□□□ -1.42
LIG3-213ENST00000590630 C8orf17Q9NRJ1 99 aa6.18□□□□□ -1.42
LIG3-213ENST00000590630 COX6B2Q6YFQ2 88 aa6.16□□□□□ -1.42
LIG3-213ENST00000590630 BPY2O14599 106 aa6.15□□□□□ -1.42
LIG3-213ENST00000590630 Q6ZVQ6 151 aa6.15□□□□□ -1.42
LIG3-213ENST00000590630 Q8N9P0 234 aaPredicted RBP6.15□□□□□ -1.42
LIG3-213ENST00000590630 MT1HP80294 61 aa6.13□□□□□ -1.43
LIG3-213ENST00000590630 K7EQZ3 153 aa6.12□□□□□ -1.43
LIG3-213ENST00000590630 ZCCHC13Q8WW36 166 aaKnown RBP6.12□□□□□ -1.43
LIG3-213ENST00000590630 MMP24-AS1A0A0U1RRL7 71 aa6.11□□□□□ -1.43
LIG3-213ENST00000590630 UBL5Q9BZL1 73 aa6.11□□□□□ -1.43
LIG3-213ENST00000590630 LINC00846Q9NV44 126 aa6.11□□□□□ -1.43
LIG3-213ENST00000590630 TMEM254Q8TBM7 123 aa6.1□□□□□ -1.43
LIG3-213ENST00000590630 FLGP20930 4061 aaPredicted RBP6.09□□□□□ -1.43
LIG3-213ENST00000590630 hDV103S1A0JD37 113 aa6.09□□□□□ -1.43
LIG3-213ENST00000590630 MRPL34Q9BQ48 92 aaKnown RBP6.09□□□□□ -1.43
LIG3-213ENST00000590630 SERP1Q9Y6X1 66 aa6.06□□□□□ -1.44
LIG3-213ENST00000590630 TRAV7A0A075B6U4 112 aa6.05□□□□□ -1.44
LIG3-213ENST00000590630 M0R2T5 61 aa6.05□□□□□ -1.44
LIG3-213ENST00000590630 Q8N9L7 120 aa6.05□□□□□ -1.44
LIG3-213ENST00000590630 HRES1P13985 223 aa6.04□□□□□ -1.44
LIG3-213ENST00000590630 ATP5EP56381 51 aaPredicted RBP6.04□□□□□ -1.44
LIG3-213ENST00000590630 MPLKIPQ8TAP9 179 aa6.04□□□□□ -1.44
LIG3-213ENST00000590630 RBM12B-AS1Q9P1G2 102 aa6.04□□□□□ -1.44
LIG3-213ENST00000590630 FAM236DA0A1B0GTK5 79 aa6.03□□□□□ -1.44
LIG3-213ENST00000590630 NDUFS5O43920 106 aa6.03□□□□□ -1.44
LIG3-213ENST00000590630 FAM236CP0DP71 79 aa6.03□□□□□ -1.44
LIG3-213ENST00000590630 SPINK7P58062 85 aa6.03□□□□□ -1.44
LIG3-213ENST00000590630 CASC2Q6XLA1 102 aa6.03□□□□□ -1.44
LIG3-213ENST00000590630 CYSTM1Q9H1C7 97 aa6.03□□□□□ -1.44
LIG3-213ENST00000590630 A0A087WVE0 104 aa6.02□□□□□ -1.45
LIG3-213ENST00000590630 NDUFC1O43677 76 aa6.02□□□□□ -1.45
LIG3-213ENST00000590630 KLKP1Q107X0 134 aa6.01□□□□□ -1.45
LIG3-213ENST00000590630 WFDC13Q8IUB5 93 aa6.01□□□□□ -1.45
LIG3-213ENST00000590630 CXCL6P80162 114 aa6□□□□□ -1.45
LIG3-213ENST00000590630 SMIM26A0A096LP01 95 aa5.99□□□□□ -1.45
LIG3-213ENST00000590630 HCG22E2RYF7 251 aa5.99□□□□□ -1.45
LIG3-213ENST00000590630 LORP23490 312 aaPredicted RBP5.99□□□□□ -1.45
LIG3-213ENST00000590630 KRTAP10-6P60371 365 aaPredicted RBP5.99□□□□□ -1.45
LIG3-213ENST00000590630 KRTAP9-2Q9BYQ4 174 aa5.99□□□□□ -1.45
LIG3-213ENST00000590630 C4orf26Q17RF5 130 aa5.98□□□□□ -1.45
LIG3-213ENST00000590630 PRO0628Q9UI54 55 aa5.98□□□□□ -1.45
LIG3-213ENST00000590630 H7BZZ5 65 aa5.97□□□□□ -1.45
LIG3-213ENST00000590630 C20orf197Q8N268 126 aa5.97□□□□□ -1.45
LIG3-213ENST00000590630 Q5W150 140 aa5.93□□□□□ -1.46
LIG3-213ENST00000590630 C7orf65Q6ZTY9 151 aa5.91□□□□□ -1.46
LIG3-213ENST00000590630 IGKV2D-30A0A075B6S6 120 aa5.9□□□□□ -1.46
LIG3-213ENST00000590630 IGKV2-30P06310 120 aa5.9□□□□□ -1.46
LIG3-213ENST00000590630 TP53AIP1Q9HCN2 124 aa5.89□□□□□ -1.47
LIG3-213ENST00000590630 KRTAP9-8Q9BYQ0 159 aa5.83□□□□□ -1.48
LIG3-213ENST00000590630 FSIP2Q5CZC0 6907 aa5.82□□□□□ -1.48
LIG3-213ENST00000590630 SNURFQ9Y675 71 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms