RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 A0A1W2PPM0 123 aa5.72□□□□□ -1.49
CLIP3-203ENST00000586457 C8orf87E5RJ46 101 aa5.72□□□□□ -1.49
CLIP3-203ENST00000586457 A0A1B0GVX0 72 aa5.71□□□□□ -1.5
CLIP3-203ENST00000586457 NREPQ16612 68 aa5.71□□□□□ -1.5
CLIP3-203ENST00000586457 TAX1BP3O14907 124 aa5.7□□□□□ -1.5
CLIP3-203ENST00000586457 H3BT86 120 aa5.69□□□□□ -1.5
CLIP3-203ENST00000586457 SPCS1Q9Y6A9 102 aa5.68□□□□□ -1.5
CLIP3-203ENST00000586457 COL5A1-AS1Q5SY13 56 aa5.67□□□□□ -1.5
CLIP3-203ENST00000586457 NOTCH2NLQ7Z3S9 236 aa5.67□□□□□ -1.5
CLIP3-203ENST00000586457 LCE2CQ5TA81 110 aa5.66□□□□□ -1.5
CLIP3-203ENST00000586457 MTURNQ8N3F0 131 aa5.66□□□□□ -1.5
CLIP3-203ENST00000586457 A8MWP4 228 aa5.65□□□□□ -1.5
CLIP3-203ENST00000586457 FAM236DA0A1B0GTK5 79 aa5.64□□□□□ -1.51
CLIP3-203ENST00000586457 KRTAP16-1A8MUX0 517 aa5.64□□□□□ -1.51
CLIP3-203ENST00000586457 FAM236CP0DP71 79 aa5.64□□□□□ -1.51
CLIP3-203ENST00000586457 MT1HP80294 61 aa5.64□□□□□ -1.51
CLIP3-203ENST00000586457 KRTAP9-2Q9BYQ4 174 aa5.64□□□□□ -1.51
CLIP3-203ENST00000586457 KRTAP19-2Q3LHN2 52 aa5.63□□□□□ -1.51
CLIP3-203ENST00000586457 RBM12B-AS1Q9P1G2 102 aa5.63□□□□□ -1.51
CLIP3-203ENST00000586457 C8orf17Q9NRJ1 99 aa5.61□□□□□ -1.51
CLIP3-203ENST00000586457 PCP4L1A6NKN8 68 aa5.6□□□□□ -1.51
CLIP3-203ENST00000586457 BPY2O14599 106 aa5.6□□□□□ -1.51
CLIP3-203ENST00000586457 IGKV3D-7A0A0C4DH55 119 aa5.59□□□□□ -1.51
CLIP3-203ENST00000586457 Q6ZVQ6 151 aa5.59□□□□□ -1.51
CLIP3-203ENST00000586457 PRR15Q8IV56 129 aa5.59□□□□□ -1.51
CLIP3-203ENST00000586457 ZCCHC13Q8WW36 166 aaKnown RBP5.59□□□□□ -1.51
CLIP3-203ENST00000586457 NDUFS5O43920 106 aa5.58□□□□□ -1.52
CLIP3-203ENST00000586457 GTF2H5Q6ZYL4 71 aa5.58□□□□□ -1.52
CLIP3-203ENST00000586457 K7EP34 96 aa5.56□□□□□ -1.52
CLIP3-203ENST00000586457 Q8N9P0 234 aaPredicted RBP5.56□□□□□ -1.52
CLIP3-203ENST00000586457 UBL5Q9BZL1 73 aa5.55□□□□□ -1.52
CLIP3-203ENST00000586457 hDV103S1A0JD37 113 aa5.54□□□□□ -1.52
CLIP3-203ENST00000586457 SPINK7P58062 85 aa5.54□□□□□ -1.52
CLIP3-203ENST00000586457 TMEM254Q8TBM7 123 aa5.54□□□□□ -1.52
CLIP3-203ENST00000586457 MRPL34Q9BQ48 92 aaKnown RBP5.54□□□□□ -1.52
CLIP3-203ENST00000586457 K7EQZ3 153 aa5.53□□□□□ -1.52
CLIP3-203ENST00000586457 KRTAP10-6P60371 365 aaPredicted RBP5.53□□□□□ -1.52
CLIP3-203ENST00000586457 MMP24-AS1A0A0U1RRL7 71 aa5.51□□□□□ -1.53
CLIP3-203ENST00000586457 F8W1H4 67 aa5.51□□□□□ -1.53
CLIP3-203ENST00000586457 SMCPP49901 116 aaPredicted RBP5.51□□□□□ -1.53
CLIP3-203ENST00000586457 LCE2DQ5TA82 110 aaPredicted RBP5.51□□□□□ -1.53
CLIP3-203ENST00000586457 LORP23490 312 aaPredicted RBP5.5□□□□□ -1.53
CLIP3-203ENST00000586457 HRES1P13985 223 aa5.49□□□□□ -1.53
CLIP3-203ENST00000586457 CASC2Q6XLA1 102 aa5.49□□□□□ -1.53
CLIP3-203ENST00000586457 WFDC13Q8IUB5 93 aa5.48□□□□□ -1.53
CLIP3-203ENST00000586457 PRO0461Q9UI25 63 aa5.48□□□□□ -1.53
CLIP3-203ENST00000586457 Q8N9L7 120 aa5.47□□□□□ -1.53
CLIP3-203ENST00000586457 LINC00846Q9NV44 126 aa5.46□□□□□ -1.54
CLIP3-203ENST00000586457 KRTAP9-6A0A140TA67 174 aa5.44□□□□□ -1.54
CLIP3-203ENST00000586457 HCG22E2RYF7 251 aa5.44□□□□□ -1.54
CLIP3-203ENST00000586457 ETDBQ3ZM63 59 aa5.44□□□□□ -1.54
CLIP3-203ENST00000586457 MPLKIPQ8TAP9 179 aa5.44□□□□□ -1.54
CLIP3-203ENST00000586457 IGKV2D-30A0A075B6S6 120 aa5.43□□□□□ -1.54
CLIP3-203ENST00000586457 IGKV2-30P06310 120 aa5.43□□□□□ -1.54
CLIP3-203ENST00000586457 CXCL6P80162 114 aa5.42□□□□□ -1.54
CLIP3-203ENST00000586457 FLGP20930 4061 aaPredicted RBP5.4□□□□□ -1.54
CLIP3-203ENST00000586457 C7orf65Q6ZTY9 151 aa5.4□□□□□ -1.54
CLIP3-203ENST00000586457 ACYP1P07311 99 aa5.37□□□□□ -1.55
CLIP3-203ENST00000586457 Q5W150 140 aa5.36□□□□□ -1.55
CLIP3-203ENST00000586457 CRCT1Q9UGL9 99 aa5.36□□□□□ -1.55
CLIP3-203ENST00000586457 H1FX-AS1Q4G0G2 97 aa5.35□□□□□ -1.55
CLIP3-203ENST00000586457 TP53AIP1Q9HCN2 124 aa5.35□□□□□ -1.55
CLIP3-203ENST00000586457 KRTAP10-10P60014 251 aa5.33□□□□□ -1.56
CLIP3-203ENST00000586457 KRTAP9-8Q9BYQ0 159 aa5.33□□□□□ -1.56
CLIP3-203ENST00000586457 HIST1H4AP62805 103 aaKnown RBP5.3□□□□□ -1.56
CLIP3-203ENST00000586457 C4orf26Q17RF5 130 aa5.29□□□□□ -1.56
CLIP3-203ENST00000586457 ATP5EP2Q5VTU8 51 aa5.29□□□□□ -1.56
CLIP3-203ENST00000586457 FSIP2Q5CZC0 6907 aa5.29□□□□□ -1.56
CLIP3-203ENST00000586457 FAM240AA0A1B0GVK7 77 aa5.28□□□□□ -1.56
CLIP3-203ENST00000586457 MT2AP02795 61 aa5.28□□□□□ -1.56
CLIP3-203ENST00000586457 A0A1B0GV90 55 aa5.23□□□□□ -1.57
CLIP3-203ENST00000586457 C1orf64Q8NEQ6 169 aa5.23□□□□□ -1.57
CLIP3-203ENST00000586457 MT1FP04733 61 aa5.22□□□□□ -1.57
CLIP3-203ENST00000586457 LINC00643Q86TS7 51 aa5.22□□□□□ -1.57
CLIP3-203ENST00000586457 TRAV22A0A0B4J277 110 aa5.21□□□□□ -1.58
CLIP3-203ENST00000586457 J3QR89 54 aa5.21□□□□□ -1.58
CLIP3-203ENST00000586457 LOC101927531A0A1B0GV80 90 aa5.19□□□□□ -1.58
CLIP3-203ENST00000586457 UQCRQO14949 82 aa5.19□□□□□ -1.58
CLIP3-203ENST00000586457 S4R3F8 94 aa5.19□□□□□ -1.58
CLIP3-203ENST00000586457 ATOX1O00244 68 aa5.18□□□□□ -1.58
CLIP3-203ENST00000586457 C5orf47Q569G3 176 aa5.18□□□□□ -1.58
CLIP3-203ENST00000586457 CYP4F30PQ9H0H9 118 aa5.18□□□□□ -1.58
CLIP3-203ENST00000586457 CSAG1Q6PB30 78 aa5.17□□□□□ -1.58
CLIP3-203ENST00000586457 H0Y9P7 68 aa5.16□□□□□ -1.58
CLIP3-203ENST00000586457 KRTAP9-3Q9BYQ3 159 aa5.16□□□□□ -1.58
CLIP3-203ENST00000586457 FAM236AA0A1B0GUQ0 79 aa5.15□□□□□ -1.59
CLIP3-203ENST00000586457 FAM236BA0A1B0GV22 79 aa5.15□□□□□ -1.59
CLIP3-203ENST00000586457 A0A087WVE0 104 aa5.14□□□□□ -1.59
CLIP3-203ENST00000586457 MP68P56378 58 aa5.12□□□□□ -1.59
CLIP3-203ENST00000586457 LCE2BO14633 110 aa5.11□□□□□ -1.59
CLIP3-203ENST00000586457 SCGB1A1P11684 91 aa5.11□□□□□ -1.59
CLIP3-203ENST00000586457 KRTAP3-1Q9BYR8 98 aa5.11□□□□□ -1.59
CLIP3-203ENST00000586457 LCA10Q71F78 164 aa5.1□□□□□ -1.59
CLIP3-203ENST00000586457 LINC00208Q96KT6 92 aa5.09□□□□□ -1.59
CLIP3-203ENST00000586457 USH2AO75445 5202 aa5.04□□□□□ -1.6
CLIP3-203ENST00000586457 NDUFC1O43677 76 aa5.04□□□□□ -1.6
CLIP3-203ENST00000586457 KRTAP19-1Q8IUB9 90 aa5.04□□□□□ -1.6
CLIP3-203ENST00000586457 A8MUN3 132 aa5.03□□□□□ -1.6
CLIP3-203ENST00000586457 OCR1Q9BZK8 76 aa5.02□□□□□ -1.61
CLIP3-203ENST00000586457 K7ERU9 68 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms