RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 A0A0U1RQV1 116 aa8.22□□□□□ -1.09
LIG3-205ENST00000585941 SPINK1P00995 79 aa8.21□□□□□ -1.09
LIG3-205ENST00000585941 KRTAP10-4P60372 401 aaPredicted RBP8.21□□□□□ -1.1
LIG3-205ENST00000585941 APOBP04114 4563 aaKnown RBP8.2□□□□□ -1.1
LIG3-205ENST00000585941 H7BZZ5 65 aa8.2□□□□□ -1.1
LIG3-205ENST00000585941 SPAG11AQ6PDA7 123 aa8.2□□□□□ -1.1
LIG3-205ENST00000585941 C8orf87E5RJ46 101 aa8.19□□□□□ -1.1
LIG3-205ENST00000585941 TP53AIP1Q9HCN2 124 aa8.19□□□□□ -1.1
LIG3-205ENST00000585941 MP68P56378 58 aa8.18□□□□□ -1.1
LIG3-205ENST00000585941 RPS29P62273 56 aaKnown RBP8.18□□□□□ -1.1
LIG3-205ENST00000585941 C1orf195Q5TG92 126 aa8.18□□□□□ -1.1
LIG3-205ENST00000585941 H3BPC8 53 aa8.17□□□□□ -1.1
LIG3-205ENST00000585941 FAM229AH3BQW9 127 aa8.17□□□□□ -1.1
LIG3-205ENST00000585941 PRR26Q8N8Z3 221 aa8.16□□□□□ -1.1
LIG3-205ENST00000585941 MRPL34Q9BQ48 92 aaKnown RBP8.16□□□□□ -1.1
LIG3-205ENST00000585941 LINC00304Q8N9R0 145 aa8.15□□□□□ -1.1
LIG3-205ENST00000585941 RYR3Q15413 4870 aa8.14□□□□□ -1.11
LIG3-205ENST00000585941 FAM236DA0A1B0GTK5 79 aa8.13□□□□□ -1.11
LIG3-205ENST00000585941 FAM236CP0DP71 79 aa8.13□□□□□ -1.11
LIG3-205ENST00000585941 ATP5EP56381 51 aaPredicted RBP8.13□□□□□ -1.11
LIG3-205ENST00000585941 ZCCHC13Q8WW36 166 aaKnown RBP8.13□□□□□ -1.11
LIG3-205ENST00000585941 TRAV22A0A0B4J277 110 aa8.11□□□□□ -1.11
LIG3-205ENST00000585941 H0Y9P7 68 aa8.11□□□□□ -1.11
LIG3-205ENST00000585941 LINC00313P59037 77 aa8.1□□□□□ -1.11
LIG3-205ENST00000585941 RPS28P62857 69 aaKnown RBP8.1□□□□□ -1.11
LIG3-205ENST00000585941 NOTCH2NLQ7Z3S9 236 aa8.1□□□□□ -1.11
LIG3-205ENST00000585941 NDUFS5O43920 106 aa8.09□□□□□ -1.11
LIG3-205ENST00000585941 LINC00208Q96KT6 92 aa8.08□□□□□ -1.12
LIG3-205ENST00000585941 FAT1Q14517 4588 aa8.08□□□□□ -1.12
LIG3-205ENST00000585941 C1orf64Q8NEQ6 169 aa8.05□□□□□ -1.12
LIG3-205ENST00000585941 Q5VSD8 79 aa8.04□□□□□ -1.12
LIG3-205ENST00000585941 PKHD1L1Q86WI1 4243 aa8.02□□□□□ -1.13
LIG3-205ENST00000585941 Q8N9P0 234 aaPredicted RBP8.02□□□□□ -1.13
LIG3-205ENST00000585941 SERP1Q9Y6X1 66 aa8.01□□□□□ -1.13
LIG3-205ENST00000585941 KRTAP16-1A8MUX0 517 aa7.97□□□□□ -1.13
LIG3-205ENST00000585941 SPANXA2-OT1Q8N9U9 137 aa7.97□□□□□ -1.13
LIG3-205ENST00000585941 HSPG2P98160 4391 aa7.96□□□□□ -1.13
LIG3-205ENST00000585941 LOC101927531A0A1B0GV80 90 aa7.95□□□□□ -1.14
LIG3-205ENST00000585941 KRTAP13-3Q3SY46 172 aa7.94□□□□□ -1.14
LIG3-205ENST00000585941 CYP4F30PQ9H0H9 118 aa7.94□□□□□ -1.14
LIG3-205ENST00000585941 KRTAP10-8P60410 259 aa7.93□□□□□ -1.14
LIG3-205ENST00000585941 Q5W150 140 aa7.92□□□□□ -1.14
LIG3-205ENST00000585941 Q8N1X5 172 aa7.92□□□□□ -1.14
LIG3-205ENST00000585941 RYR1P21817 5038 aa7.88□□□□□ -1.15
LIG3-205ENST00000585941 OXTP01178 125 aa7.87□□□□□ -1.15
LIG3-205ENST00000585941 FLG2Q5D862 2391 aaPredicted RBP7.87□□□□□ -1.15
LIG3-205ENST00000585941 EPPK1P58107 5090 aaKnown RBP7.86□□□□□ -1.15
LIG3-205ENST00000585941 IGLV7-46A0A075B6I9 117 aa7.86□□□□□ -1.15
LIG3-205ENST00000585941 PCOTHQ58A44 107 aa7.86□□□□□ -1.15
LIG3-205ENST00000585941 BIRC6Q9NR09 4857 aa7.84□□□□□ -1.15
LIG3-205ENST00000585941 SMIM26A0A096LP01 95 aa7.83□□□□□ -1.16
LIG3-205ENST00000585941 PRR4Q16378 134 aa7.83□□□□□ -1.16
LIG3-205ENST00000585941 IGKV2-30P06310 120 aa7.82□□□□□ -1.16
LIG3-205ENST00000585941 FP248Q71RG6 208 aaPredicted RBP7.82□□□□□ -1.16
LIG3-205ENST00000585941 RETNLBQ9BQ08 111 aa7.81□□□□□ -1.16
LIG3-205ENST00000585941 C20orf166-AS1Q96NR2 134 aa7.8□□□□□ -1.16
LIG3-205ENST00000585941 KRTAP17-1Q9BYP8 105 aa7.8□□□□□ -1.16
LIG3-205ENST00000585941 A8MUU9 505 aa7.79□□□□□ -1.16
LIG3-205ENST00000585941 TNXBP22105 4242 aa7.78□□□□□ -1.16
LIG3-205ENST00000585941 C9orf92A6NGG3 77 aa7.78□□□□□ -1.16
LIG3-205ENST00000585941 KIAA1109Q2LD37 5005 aa7.76□□□□□ -1.17
LIG3-205ENST00000585941 LRP1Q07954 4544 aaKnown RBP7.75□□□□□ -1.17
LIG3-205ENST00000585941 MT1HL1P0DM35 61 aa7.74□□□□□ -1.17
LIG3-205ENST00000585941 FAT3Q8TDW7 4589 aa7.73□□□□□ -1.17
LIG3-205ENST00000585941 DMBT1Q9UGM3 2413 aaPredicted RBP7.72□□□□□ -1.17
LIG3-205ENST00000585941 IGKV2D-30A0A075B6S6 120 aa7.72□□□□□ -1.17
LIG3-205ENST00000585941 HRES1P13985 223 aa7.72□□□□□ -1.17
LIG3-205ENST00000585941 Q75L30 129 aa7.72□□□□□ -1.17
LIG3-205ENST00000585941 C7orf65Q6ZTY9 151 aa7.71□□□□□ -1.18
LIG3-205ENST00000585941 COA5Q86WW8 74 aa7.69□□□□□ -1.18
LIG3-205ENST00000585941 ACYP2P14621 99 aa7.67□□□□□ -1.18
LIG3-205ENST00000585941 DMAC1Q96GE9 116 aa7.67□□□□□ -1.18
LIG3-205ENST00000585941 Q1T7F1 81 aa7.63□□□□□ -1.19
LIG3-205ENST00000585941 V9GYY9 64 aa7.63□□□□□ -1.19
LIG3-205ENST00000585941 MPLKIPQ8TAP9 179 aa7.61□□□□□ -1.19
LIG3-205ENST00000585941 C4orf26Q17RF5 130 aa7.6□□□□□ -1.19
LIG3-205ENST00000585941 MYCBP2O75592 4640 aa7.6□□□□□ -1.19
LIG3-205ENST00000585941 ATP11AUNQ6ZP68 121 aa7.6□□□□□ -1.19
LIG3-205ENST00000585941 RPL37P61927 97 aaKnown RBP7.58□□□□□ -1.2
LIG3-205ENST00000585941 A8MUN3 132 aa7.57□□□□□ -1.2
LIG3-205ENST00000585941 KRTAP4-5Q9BYR2 181 aa7.57□□□□□ -1.2
LIG3-205ENST00000585941 SPINK7P58062 85 aa7.56□□□□□ -1.2
LIG3-205ENST00000585941 XP32Q5T750 250 aa7.56□□□□□ -1.2
LIG3-205ENST00000585941 HERC2O95714 4834 aa7.54□□□□□ -1.2
LIG3-205ENST00000585941 CHKB-CPT1BH3BT56 60 aa7.54□□□□□ -1.2
LIG3-205ENST00000585941 TPRXLQ17RH7 258 aa7.53□□□□□ -1.2
LIG3-205ENST00000585941 J3QL48 77 aa7.47□□□□□ -1.21
LIG3-205ENST00000585941 LINC01558Q9Y6Z2 57 aa7.47□□□□□ -1.21
LIG3-205ENST00000585941 PSPHP1O15172 72 aa7.43□□□□□ -1.22
LIG3-205ENST00000585941 COX6B2Q6YFQ2 88 aa7.42□□□□□ -1.22
LIG3-205ENST00000585941 PRR15LQ9BU68 103 aa7.41□□□□□ -1.22
LIG3-205ENST00000585941 PCLOQ9Y6V0 5065 aa7.41□□□□□ -1.22
LIG3-205ENST00000585941 SPTSSBQ8NFR3 76 aa7.41□□□□□ -1.22
LIG3-205ENST00000585941 Q5VV11 94 aa7.38□□□□□ -1.23
LIG3-205ENST00000585941 KRTAP3-1Q9BYR8 98 aa7.38□□□□□ -1.23
LIG3-205ENST00000585941 ABCA13Q86UQ4 5058 aa7.32□□□□□ -1.24
LIG3-205ENST00000585941 BRK1Q8WUW1 75 aa7.3□□□□□ -1.24
LIG3-205ENST00000585941 A0A1B0GU69 56 aa7.29□□□□□ -1.24
LIG3-205ENST00000585941 SEC61BP60468 96 aaKnown RBP7.28□□□□□ -1.24
LIG3-205ENST00000585941 PRO0628Q9UI54 55 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms