RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 SNURFQ9Y675 71 aa6.65□□□□□ -1.34
LIG3-204ENST00000585740 H7BZZ5 65 aa6.64□□□□□ -1.35
LIG3-204ENST00000585740 MMP24-AS1A0A0U1RRL7 71 aa6.63□□□□□ -1.35
LIG3-204ENST00000585740 ATP5EP56381 51 aaPredicted RBP6.63□□□□□ -1.35
LIG3-204ENST00000585740 LCE2AQ5TA79 106 aaPredicted RBP6.63□□□□□ -1.35
LIG3-204ENST00000585740 FAM236DA0A1B0GTK5 79 aa6.62□□□□□ -1.35
LIG3-204ENST00000585740 A0A1B0GVX0 72 aa6.62□□□□□ -1.35
LIG3-204ENST00000585740 FAM236CP0DP71 79 aa6.62□□□□□ -1.35
LIG3-204ENST00000585740 RPS28P62857 69 aaKnown RBP6.62□□□□□ -1.35
LIG3-204ENST00000585740 hDV103S1A0JD37 113 aa6.61□□□□□ -1.35
LIG3-204ENST00000585740 H3BPC8 53 aa6.61□□□□□ -1.35
LIG3-204ENST00000585740 MP68P56378 58 aa6.61□□□□□ -1.35
LIG3-204ENST00000585740 Q5XG85 94 aa6.61□□□□□ -1.35
LIG3-204ENST00000585740 SPINK6Q6UWN8 80 aa6.61□□□□□ -1.35
LIG3-204ENST00000585740 C8orf17Q9NRJ1 99 aa6.61□□□□□ -1.35
LIG3-204ENST00000585740 LRP1BQ9NZR2 4599 aa6.61□□□□□ -1.35
LIG3-204ENST00000585740 Q8N1X5 172 aa6.6□□□□□ -1.35
LIG3-204ENST00000585740 UBR4Q5T4S7 5183 aa6.59□□□□□ -1.35
LIG3-204ENST00000585740 KRTAP1-4P0C5Y4 121 aa6.59□□□□□ -1.35
LIG3-204ENST00000585740 KRTAP13-2Q52LG2 175 aa6.59□□□□□ -1.35
LIG3-204ENST00000585740 TP53AIP1Q9HCN2 124 aa6.59□□□□□ -1.35
LIG3-204ENST00000585740 A0A087X002 238 aa6.58□□□□□ -1.36
LIG3-204ENST00000585740 LIMD2Q9BT23 127 aa6.58□□□□□ -1.36
LIG3-204ENST00000585740 APOBP04114 4563 aaKnown RBP6.58□□□□□ -1.36
LIG3-204ENST00000585740 DMBT1Q9UGM3 2413 aaPredicted RBP6.57□□□□□ -1.36
LIG3-204ENST00000585740 IGHV6-1A0A0B4J1U7 121 aa6.57□□□□□ -1.36
LIG3-204ENST00000585740 C8orf87E5RJ46 101 aa6.57□□□□□ -1.36
LIG3-204ENST00000585740 ZCCHC13Q8WW36 166 aaKnown RBP6.57□□□□□ -1.36
LIG3-204ENST00000585740 C4orf48Q5BLP8 95 aa6.56□□□□□ -1.36
LIG3-204ENST00000585740 PLA2G1BP04054 148 aaKnown RBP6.55□□□□□ -1.36
LIG3-204ENST00000585740 H0Y9P7 68 aa6.54□□□□□ -1.36
LIG3-204ENST00000585740 TYMSOSQ8TAI1 123 aa6.54□□□□□ -1.36
LIG3-204ENST00000585740 MRPL34Q9BQ48 92 aaKnown RBP6.54□□□□□ -1.36
LIG3-204ENST00000585740 SERP1Q9Y6X1 66 aa6.54□□□□□ -1.36
LIG3-204ENST00000585740 VPS13BQ7Z7G8 4022 aa6.53□□□□□ -1.36
LIG3-204ENST00000585740 TRAV22A0A0B4J277 110 aa6.52□□□□□ -1.37
LIG3-204ENST00000585740 SPINK1P00995 79 aa6.51□□□□□ -1.37
LIG3-204ENST00000585740 LCE2CQ5TA81 110 aa6.51□□□□□ -1.37
LIG3-204ENST00000585740 SPAG11AQ6PDA7 123 aa6.51□□□□□ -1.37
LIG3-204ENST00000585740 RPS29P62273 56 aaKnown RBP6.5□□□□□ -1.37
LIG3-204ENST00000585740 C1orf195Q5TG92 126 aa6.5□□□□□ -1.37
LIG3-204ENST00000585740 LINC00208Q96KT6 92 aa6.5□□□□□ -1.37
LIG3-204ENST00000585740 NDUFS5O43920 106 aa6.49□□□□□ -1.37
LIG3-204ENST00000585740 SMR3BP02814 79 aaPredicted RBP6.48□□□□□ -1.37
LIG3-204ENST00000585740 LINC00313P59037 77 aa6.47□□□□□ -1.37
LIG3-204ENST00000585740 LINC00304Q8N9R0 145 aa6.47□□□□□ -1.37
LIG3-204ENST00000585740 C1orf64Q8NEQ6 169 aa6.47□□□□□ -1.37
LIG3-204ENST00000585740 MYCBP2O75592 4640 aa6.47□□□□□ -1.37
LIG3-204ENST00000585740 NOTCH2NLQ7Z3S9 236 aa6.45□□□□□ -1.38
LIG3-204ENST00000585740 SPANXA2-OT1Q8N9U9 137 aa6.45□□□□□ -1.38
LIG3-204ENST00000585740 PKHD1L1Q86WI1 4243 aa6.45□□□□□ -1.38
LIG3-204ENST00000585740 KRTAP10-4P60372 401 aaPredicted RBP6.44□□□□□ -1.38
LIG3-204ENST00000585740 PRR26Q8N8Z3 221 aa6.44□□□□□ -1.38
LIG3-204ENST00000585740 CYP4F30PQ9H0H9 118 aa6.44□□□□□ -1.38
LIG3-204ENST00000585740 FAT1Q14517 4588 aa6.43□□□□□ -1.38
LIG3-204ENST00000585740 FAM229AH3BQW9 127 aa6.41□□□□□ -1.38
LIG3-204ENST00000585740 OXTP01178 125 aa6.41□□□□□ -1.38
LIG3-204ENST00000585740 SMIM26A0A096LP01 95 aa6.4□□□□□ -1.38
LIG3-204ENST00000585740 LOC101927531A0A1B0GV80 90 aa6.4□□□□□ -1.38
LIG3-204ENST00000585740 Q5VSD8 79 aa6.4□□□□□ -1.38
LIG3-204ENST00000585740 Q8N9P0 234 aaPredicted RBP6.4□□□□□ -1.38
LIG3-204ENST00000585740 FLG2Q5D862 2391 aaPredicted RBP6.39□□□□□ -1.39
LIG3-204ENST00000585740 HMCN2Q8NDA2 5059 aa6.36□□□□□ -1.39
LIG3-204ENST00000585740 IGLV7-46A0A075B6I9 117 aa6.35□□□□□ -1.39
LIG3-204ENST00000585740 KRTAP16-1A8MUX0 517 aa6.35□□□□□ -1.39
LIG3-204ENST00000585740 LORP23490 312 aaPredicted RBP6.35□□□□□ -1.39
LIG3-204ENST00000585740 KRTAP13-3Q3SY46 172 aa6.35□□□□□ -1.39
LIG3-204ENST00000585740 PCOTHQ58A44 107 aa6.32□□□□□ -1.4
LIG3-204ENST00000585740 Q5W150 140 aa6.32□□□□□ -1.4
LIG3-204ENST00000585740 PRR4Q16378 134 aa6.31□□□□□ -1.4
LIG3-204ENST00000585740 IGKV2-30P06310 120 aa6.27□□□□□ -1.41
LIG3-204ENST00000585740 FP248Q71RG6 208 aaPredicted RBP6.26□□□□□ -1.41
LIG3-204ENST00000585740 KRTAP10-8P60410 259 aa6.24□□□□□ -1.41
LIG3-204ENST00000585740 V9GYY9 64 aa6.24□□□□□ -1.41
LIG3-204ENST00000585740 RETNLBQ9BQ08 111 aa6.23□□□□□ -1.41
LIG3-204ENST00000585740 C4orf26Q17RF5 130 aa6.22□□□□□ -1.41
LIG3-204ENST00000585740 COA5Q86WW8 74 aa6.22□□□□□ -1.41
LIG3-204ENST00000585740 RNF213Q63HN8 5207 aa6.22□□□□□ -1.41
LIG3-204ENST00000585740 A8MUU9 505 aa6.21□□□□□ -1.42
LIG3-204ENST00000585740 Q1T7F1 81 aa6.21□□□□□ -1.42
LIG3-204ENST00000585740 C20orf166-AS1Q96NR2 134 aa6.21□□□□□ -1.42
LIG3-204ENST00000585740 HRES1P13985 223 aa6.2□□□□□ -1.42
LIG3-204ENST00000585740 ACYP2P14621 99 aa6.19□□□□□ -1.42
LIG3-204ENST00000585740 MPLKIPQ8TAP9 179 aa6.19□□□□□ -1.42
LIG3-204ENST00000585740 LRP1Q07954 4544 aaKnown RBP6.18□□□□□ -1.42
LIG3-204ENST00000585740 C7orf65Q6ZTY9 151 aa6.18□□□□□ -1.42
LIG3-204ENST00000585740 IGKV2D-30A0A075B6S6 120 aa6.17□□□□□ -1.42
LIG3-204ENST00000585740 C9orf92A6NGG3 77 aa6.16□□□□□ -1.42
LIG3-204ENST00000585740 DMAC1Q96GE9 116 aa6.16□□□□□ -1.42
LIG3-204ENST00000585740 FAT3Q8TDW7 4589 aa6.16□□□□□ -1.42
LIG3-204ENST00000585740 TNXBP22105 4242 aa6.15□□□□□ -1.43
LIG3-204ENST00000585740 Q75L30 129 aa6.13□□□□□ -1.43
LIG3-204ENST00000585740 LOC100996750A0A140TA64 210 aa6.09□□□□□ -1.43
LIG3-204ENST00000585740 A8MUN3 132 aa6.09□□□□□ -1.43
LIG3-204ENST00000585740 CHKB-CPT1BH3BT56 60 aa6.09□□□□□ -1.43
LIG3-204ENST00000585740 KRTAP4-6Q9BYQ5 205 aa6.09□□□□□ -1.43
LIG3-204ENST00000585740 LRP2P98164 4655 aa6.08□□□□□ -1.44
LIG3-204ENST00000585740 LINC01558Q9Y6Z2 57 aa6.07□□□□□ -1.44
LIG3-204ENST00000585740 MT1HL1P0DM35 61 aa6.06□□□□□ -1.44
LIG3-204ENST00000585740 PSPHP1O15172 72 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms