RNA–Protein interactions for RNA: ENST00000582252.1

CCDC47-204, Transcript of coiled-coil domain containing 47, humanhuman

TSL 2 BASIC

Gene CCDC47, Length 1,719 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-204ENST00000582252 KRTAP1-4P0C5Y4 121 aa13.24□□□□□ -0.29
CCDC47-204ENST00000582252 ATP5EP56381 51 aaPredicted RBP13.24□□□□□ -0.29
CCDC47-204ENST00000582252 SPINK6Q6UWN8 80 aa13.24□□□□□ -0.29
CCDC47-204ENST00000582252 MP68P56378 58 aa13.23□□□□□ -0.29
CCDC47-204ENST00000582252 RPS28P62857 69 aaKnown RBP13.23□□□□□ -0.29
CCDC47-204ENST00000582252 IGHV6-1A0A0B4J1U7 121 aa13.22□□□□□ -0.29
CCDC47-204ENST00000582252 KIAA1109Q2LD37 5005 aa13.2□□□□□ -0.3
CCDC47-204ENST00000582252 Q5XG85 94 aa13.2□□□□□ -0.3
CCDC47-204ENST00000582252 FAM229AH3BQW9 127 aa13.19□□□□□ -0.3
CCDC47-204ENST00000582252 H3BPC8 53 aa13.18□□□□□ -0.3
CCDC47-204ENST00000582252 PLA2G1BP04054 148 aaKnown RBP13.18□□□□□ -0.3
CCDC47-204ENST00000582252 LIMD2Q9BT23 127 aa13.18□□□□□ -0.3
CCDC47-204ENST00000582252 KRTAP10-4P60372 401 aaPredicted RBP13.17□□□□□ -0.3
CCDC47-204ENST00000582252 TP53AIP1Q9HCN2 124 aa13.17□□□□□ -0.3
CCDC47-204ENST00000582252 ZCCHC13Q8WW36 166 aaKnown RBP13.16□□□□□ -0.3
CCDC47-204ENST00000582252 C4orf48Q5BLP8 95 aa13.13□□□□□ -0.31
CCDC47-204ENST00000582252 TYMSOSQ8TAI1 123 aa13.13□□□□□ -0.31
CCDC47-204ENST00000582252 H0Y9P7 68 aa13.13□□□□□ -0.31
CCDC47-204ENST00000582252 C8orf87E5RJ46 101 aa13.11□□□□□ -0.31
CCDC47-204ENST00000582252 MRPL34Q9BQ48 92 aaKnown RBP13.11□□□□□ -0.31
CCDC47-204ENST00000582252 PKHD1L1Q86WI1 4243 aa13.11□□□□□ -0.31
CCDC47-204ENST00000582252 Q5VSD8 79 aa13.1□□□□□ -0.31
CCDC47-204ENST00000582252 SERP1Q9Y6X1 66 aa13.09□□□□□ -0.31
CCDC47-204ENST00000582252 TRAV22A0A0B4J277 110 aa13.08□□□□□ -0.32
CCDC47-204ENST00000582252 LINC00208Q96KT6 92 aa13.07□□□□□ -0.32
CCDC47-204ENST00000582252 NDUFS5O43920 106 aa13.05□□□□□ -0.32
CCDC47-204ENST00000582252 SPINK1P00995 79 aa13.05□□□□□ -0.32
CCDC47-204ENST00000582252 C1orf195Q5TG92 126 aa13.05□□□□□ -0.32
CCDC47-204ENST00000582252 Q8N1X5 172 aa13.04□□□□□ -0.32
CCDC47-204ENST00000582252 BIRC6Q9NR09 4857 aa13.02□□□□□ -0.33
CCDC47-204ENST00000582252 SPAG11AQ6PDA7 123 aa13□□□□□ -0.33
CCDC47-204ENST00000582252 NOTCH2NLQ7Z3S9 236 aa13□□□□□ -0.33
CCDC47-204ENST00000582252 C1orf64Q8NEQ6 169 aa12.99□□□□□ -0.33
CCDC47-204ENST00000582252 RPS29P62273 56 aaKnown RBP12.99□□□□□ -0.33
CCDC47-204ENST00000582252 LINC00313P59037 77 aa12.97□□□□□ -0.33
CCDC47-204ENST00000582252 PRR26Q8N8Z3 221 aa12.96□□□□□ -0.33
CCDC47-204ENST00000582252 LINC00304Q8N9R0 145 aa12.96□□□□□ -0.33
CCDC47-204ENST00000582252 KRTAP17-1Q9BYP8 105 aa12.94□□□□□ -0.34
CCDC47-204ENST00000582252 OXTP01178 125 aa12.92□□□□□ -0.34
CCDC47-204ENST00000582252 SPANXA2-OT1Q8N9U9 137 aa12.88□□□□□ -0.35
CCDC47-204ENST00000582252 CYP4F30PQ9H0H9 118 aa12.88□□□□□ -0.35
CCDC47-204ENST00000582252 FLG2Q5D862 2391 aaPredicted RBP12.85□□□□□ -0.35
CCDC47-204ENST00000582252 Q8N9P0 234 aaPredicted RBP12.82□□□□□ -0.36
CCDC47-204ENST00000582252 FAT3Q8TDW7 4589 aa12.81□□□□□ -0.36
CCDC47-204ENST00000582252 HERC2O95714 4834 aa12.8□□□□□ -0.36
CCDC47-204ENST00000582252 LRP1Q07954 4544 aaKnown RBP12.8□□□□□ -0.36
CCDC47-204ENST00000582252 SMIM26A0A096LP01 95 aa12.8□□□□□ -0.36
CCDC47-204ENST00000582252 LOC101927531A0A1B0GV80 90 aa12.8□□□□□ -0.36
CCDC47-204ENST00000582252 KRTAP16-1A8MUX0 517 aa12.76□□□□□ -0.37
CCDC47-204ENST00000582252 TNXBP22105 4242 aa12.74□□□□□ -0.37
CCDC47-204ENST00000582252 PRR4Q16378 134 aa12.74□□□□□ -0.37
CCDC47-204ENST00000582252 KRTAP13-3Q3SY46 172 aa12.74□□□□□ -0.37
CCDC47-204ENST00000582252 MYCBP2O75592 4640 aa12.73□□□□□ -0.37
CCDC47-204ENST00000582252 PCOTHQ58A44 107 aa12.73□□□□□ -0.37
CCDC47-204ENST00000582252 Q5W150 140 aa12.73□□□□□ -0.37
CCDC47-204ENST00000582252 IGLV7-46A0A075B6I9 117 aa12.72□□□□□ -0.37
CCDC47-204ENST00000582252 KRTAP4-5Q9BYR2 181 aa12.71□□□□□ -0.38
CCDC47-204ENST00000582252 KRTAP10-8P60410 259 aa12.65□□□□□ -0.38
CCDC47-204ENST00000582252 ABCA13Q86UQ4 5058 aa12.63□□□□□ -0.39
CCDC47-204ENST00000582252 FP248Q71RG6 208 aaPredicted RBP12.6□□□□□ -0.39
CCDC47-204ENST00000582252 DMBT1Q9UGM3 2413 aaPredicted RBP12.57□□□□□ -0.4
CCDC47-204ENST00000582252 IGKV2-30P06310 120 aa12.57□□□□□ -0.4
CCDC47-204ENST00000582252 RETNLBQ9BQ08 111 aa12.57□□□□□ -0.4
CCDC47-204ENST00000582252 MT1HL1P0DM35 61 aa12.54□□□□□ -0.4
CCDC47-204ENST00000582252 C4orf26Q17RF5 130 aa12.52□□□□□ -0.41
CCDC47-204ENST00000582252 COA5Q86WW8 74 aa12.49□□□□□ -0.41
CCDC47-204ENST00000582252 MPLKIPQ8TAP9 179 aa12.48□□□□□ -0.41
CCDC47-204ENST00000582252 C9orf92A6NGG3 77 aa12.44□□□□□ -0.42
CCDC47-204ENST00000582252 HRES1P13985 223 aa12.44□□□□□ -0.42
CCDC47-204ENST00000582252 Q1T7F1 81 aa12.44□□□□□ -0.42
CCDC47-204ENST00000582252 V9GYY9 64 aa12.44□□□□□ -0.42
CCDC47-204ENST00000582252 C20orf166-AS1Q96NR2 134 aa12.43□□□□□ -0.42
CCDC47-204ENST00000582252 IGKV2D-30A0A075B6S6 120 aa12.42□□□□□ -0.42
CCDC47-204ENST00000582252 A8MUU9 505 aa12.42□□□□□ -0.42
CCDC47-204ENST00000582252 ACYP2P14621 99 aa12.39□□□□□ -0.43
CCDC47-204ENST00000582252 C7orf65Q6ZTY9 151 aa12.37□□□□□ -0.43
CCDC47-204ENST00000582252 DMAC1Q96GE9 116 aa12.36□□□□□ -0.43
CCDC47-204ENST00000582252 J3QL48 77 aa12.34□□□□□ -0.43
CCDC47-204ENST00000582252 Q75L30 129 aa12.28□□□□□ -0.44
CCDC47-204ENST00000582252 PCLOQ9Y6V0 5065 aa12.27□□□□□ -0.44
CCDC47-204ENST00000582252 CHKB-CPT1BH3BT56 60 aa12.23□□□□□ -0.45
CCDC47-204ENST00000582252 PSPHP1O15172 72 aa12.17□□□□□ -0.46
CCDC47-204ENST00000582252 A8MUN3 132 aa12.15□□□□□ -0.46
CCDC47-204ENST00000582252 LINC01558Q9Y6Z2 57 aa12.13□□□□□ -0.47
CCDC47-204ENST00000582252 PRR15LQ9BU68 103 aa12.11□□□□□ -0.47
CCDC47-204ENST00000582252 ATP11AUNQ6ZP68 121 aa12.1□□□□□ -0.47
CCDC47-204ENST00000582252 SPINK7P58062 85 aa12.08□□□□□ -0.48
CCDC47-204ENST00000582252 RPL37P61927 97 aaKnown RBP12.06□□□□□ -0.48
CCDC47-204ENST00000582252 Q5VV11 94 aa12.06□□□□□ -0.48
CCDC47-204ENST00000582252 XP32Q5T750 250 aa12.02□□□□□ -0.49
CCDC47-204ENST00000582252 BRK1Q8WUW1 75 aa12.02□□□□□ -0.49
CCDC47-204ENST00000582252 HERC1Q15751 4861 aa11.98□□□□□ -0.49
CCDC47-204ENST00000582252 PRO0628Q9UI54 55 aa11.97□□□□□ -0.49
CCDC47-204ENST00000582252 TPRXLQ17RH7 258 aa11.96□□□□□ -0.49
CCDC47-204ENST00000582252 SVIPQ8NHG7 77 aa11.94□□□□□ -0.5
CCDC47-204ENST00000582252 SPTSSBQ8NFR3 76 aa11.91□□□□□ -0.5
CCDC47-204ENST00000582252 COX6B2Q6YFQ2 88 aa11.87□□□□□ -0.51
CCDC47-204ENST00000582252 LPAP08519 4548 aa11.86□□□□□ -0.51
CCDC47-204ENST00000582252 A0A1B0GU69 56 aa11.84□□□□□ -0.51
CCDC47-204ENST00000582252 A6NED7 52 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 192.6 ms