RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 Q5VSD8 79 aa6.14□□□□□ -1.43
SS18-217ENST00000580958 LINC00472Q9H8W2 130 aa6.14□□□□□ -1.43
SS18-217ENST00000580958 SS18L2Q9UHA2 77 aa6.14□□□□□ -1.43
SS18-217ENST00000580958 FAT3Q8TDW7 4589 aa6.13□□□□□ -1.43
SS18-217ENST00000580958 IGKV4-1P06312 121 aa6.13□□□□□ -1.43
SS18-217ENST00000580958 DSCR10P59022 87 aa6.13□□□□□ -1.43
SS18-217ENST00000580958 PRR26Q8N8Z3 221 aa6.13□□□□□ -1.43
SS18-217ENST00000580958 TYMSOSQ8TAI1 123 aa6.13□□□□□ -1.43
SS18-217ENST00000580958 Q96NJ1 140 aa6.12□□□□□ -1.43
SS18-217ENST00000580958 KIAA1109Q2LD37 5005 aa6.12□□□□□ -1.43
SS18-217ENST00000580958 PCP4P48539 62 aa6.11□□□□□ -1.43
SS18-217ENST00000580958 KRTAP17-1Q9BYP8 105 aa6.11□□□□□ -1.43
SS18-217ENST00000580958 TNXBP22105 4242 aa6.1□□□□□ -1.43
SS18-217ENST00000580958 K7EQZ3 153 aa6.09□□□□□ -1.43
SS18-217ENST00000580958 J3KT08 172 aa6.08□□□□□ -1.44
SS18-217ENST00000580958 LINC00304Q8N9R0 145 aa6.07□□□□□ -1.44
SS18-217ENST00000580958 ANAPC13Q9BS18 74 aa6.07□□□□□ -1.44
SS18-217ENST00000580958 LRP1Q07954 4544 aaKnown RBP6.06□□□□□ -1.44
SS18-217ENST00000580958 A8MWP4 228 aa6.06□□□□□ -1.44
SS18-217ENST00000580958 ATOX1O00244 68 aa6.06□□□□□ -1.44
SS18-217ENST00000580958 ASB16-AS1Q495Z4 193 aa6.06□□□□□ -1.44
SS18-217ENST00000580958 PRR15Q8IV56 129 aa6.05□□□□□ -1.44
SS18-217ENST00000580958 Q8N1X5 172 aa6.05□□□□□ -1.44
SS18-217ENST00000580958 Q5XG85 94 aa6.04□□□□□ -1.44
SS18-217ENST00000580958 LIMD2Q9BT23 127 aa6.04□□□□□ -1.44
SS18-217ENST00000580958 BIRC6Q9NR09 4857 aa6.03□□□□□ -1.44
SS18-217ENST00000580958 NDUFB1O75438 58 aa6.03□□□□□ -1.44
SS18-217ENST00000580958 HCG22E2RYF7 251 aa6.02□□□□□ -1.45
SS18-217ENST00000580958 SPINK1P00995 79 aa6.02□□□□□ -1.45
SS18-217ENST00000580958 C1orf195Q5TG92 126 aa6.02□□□□□ -1.45
SS18-217ENST00000580958 SPAG11AQ6PDA7 123 aa6.02□□□□□ -1.45
SS18-217ENST00000580958 A0A1B0GVX0 72 aa6.01□□□□□ -1.45
SS18-217ENST00000580958 WFDC13Q8IUB5 93 aa6.01□□□□□ -1.45
SS18-217ENST00000580958 FLG2Q5D862 2391 aaPredicted RBP6.01□□□□□ -1.45
SS18-217ENST00000580958 IGHV6-1A0A0B4J1U7 121 aa6□□□□□ -1.45
SS18-217ENST00000580958 MMP24-AS1A0A0U1RRL7 71 aa5.99□□□□□ -1.45
SS18-217ENST00000580958 RPS29P62273 56 aaKnown RBP5.99□□□□□ -1.45
SS18-217ENST00000580958 C8orf17Q9NRJ1 99 aa5.98□□□□□ -1.45
SS18-217ENST00000580958 TRAV7A0A075B6U4 112 aa5.97□□□□□ -1.45
SS18-217ENST00000580958 KRTAP29-1A8MX34 341 aaPredicted RBP5.97□□□□□ -1.45
SS18-217ENST00000580958 KRTAP10-8P60410 259 aa5.97□□□□□ -1.45
SS18-217ENST00000580958 CASC2Q6XLA1 102 aa5.97□□□□□ -1.45
SS18-217ENST00000580958 SERP2Q8N6R1 65 aa5.97□□□□□ -1.45
SS18-217ENST00000580958 CCDC179H3BU77 68 aa5.96□□□□□ -1.46
SS18-217ENST00000580958 COX7CP15954 63 aa5.96□□□□□ -1.46
SS18-217ENST00000580958 SMIM20Q8N5G0 67 aa5.96□□□□□ -1.46
SS18-217ENST00000580958 NOTCH2NLQ7Z3S9 236 aa5.95□□□□□ -1.46
SS18-217ENST00000580958 OCR1Q9BZK8 76 aa5.95□□□□□ -1.46
SS18-217ENST00000580958 HERC2O95714 4834 aa5.95□□□□□ -1.46
SS18-217ENST00000580958 hDV103S1A0JD37 113 aa5.94□□□□□ -1.46
SS18-217ENST00000580958 C8orf87E5RJ46 101 aa5.93□□□□□ -1.46
SS18-217ENST00000580958 UQCRQO14949 82 aa5.93□□□□□ -1.46
SS18-217ENST00000580958 MYCBP2O75592 4640 aa5.93□□□□□ -1.46
SS18-217ENST00000580958 TMEM254Q8TBM7 123 aa5.92□□□□□ -1.46
SS18-217ENST00000580958 MT1HL1P0DM35 61 aa5.9□□□□□ -1.46
SS18-217ENST00000580958 MRPL34Q9BQ48 92 aaKnown RBP5.9□□□□□ -1.46
SS18-217ENST00000580958 LINC00313P59037 77 aa5.89□□□□□ -1.47
SS18-217ENST00000580958 RETNLBQ9BQ08 111 aa5.89□□□□□ -1.47
SS18-217ENST00000580958 ABCA13Q86UQ4 5058 aa5.89□□□□□ -1.47
SS18-217ENST00000580958 DMBT1Q9UGM3 2413 aaPredicted RBP5.88□□□□□ -1.47
SS18-217ENST00000580958 NDUFS5O43920 106 aa5.87□□□□□ -1.47
SS18-217ENST00000580958 C20orf197Q8N268 126 aa5.87□□□□□ -1.47
SS18-217ENST00000580958 OXTP01178 125 aa5.86□□□□□ -1.47
SS18-217ENST00000580958 KRTAP16-1A8MUX0 517 aa5.85□□□□□ -1.47
SS18-217ENST00000580958 SNURFQ9Y675 71 aa5.84□□□□□ -1.47
SS18-217ENST00000580958 CYSTM1Q9H1C7 97 aa5.83□□□□□ -1.48
SS18-217ENST00000580958 A0A0U1RQV1 116 aa5.82□□□□□ -1.48
SS18-217ENST00000580958 H0Y9P7 68 aa5.82□□□□□ -1.48
SS18-217ENST00000580958 C5orf47Q569G3 176 aa5.82□□□□□ -1.48
SS18-217ENST00000580958 TP53AIP1Q9HCN2 124 aa5.82□□□□□ -1.48
SS18-217ENST00000580958 C9orf92A6NGG3 77 aa5.81□□□□□ -1.48
SS18-217ENST00000580958 MP68P56378 58 aa5.8□□□□□ -1.48
SS18-217ENST00000580958 KLKP1Q107X0 134 aa5.8□□□□□ -1.48
SS18-217ENST00000580958 KRTAP5-3Q6L8H2 238 aa5.8□□□□□ -1.48
SS18-217ENST00000580958 Q8N9P0 234 aaPredicted RBP5.8□□□□□ -1.48
SS18-217ENST00000580958 TRAV22A0A0B4J277 110 aa5.79□□□□□ -1.48
SS18-217ENST00000580958 FP248Q71RG6 208 aaPredicted RBP5.78□□□□□ -1.48
SS18-217ENST00000580958 LINC00208Q96KT6 92 aa5.78□□□□□ -1.48
SS18-217ENST00000580958 Q5W150 140 aa5.77□□□□□ -1.49
SS18-217ENST00000580958 ZCCHC13Q8WW36 166 aaKnown RBP5.77□□□□□ -1.49
SS18-217ENST00000580958 IGLV7-46A0A075B6I9 117 aa5.75□□□□□ -1.49
SS18-217ENST00000580958 H3BPC8 53 aa5.75□□□□□ -1.49
SS18-217ENST00000580958 KRTAP13-3Q3SY46 172 aa5.75□□□□□ -1.49
SS18-217ENST00000580958 C1orf64Q8NEQ6 169 aa5.75□□□□□ -1.49
SS18-217ENST00000580958 H7BZZ5 65 aa5.74□□□□□ -1.49
SS18-217ENST00000580958 A8MUU9 505 aa5.73□□□□□ -1.49
SS18-217ENST00000580958 NDUFC1O43677 76 aa5.73□□□□□ -1.49
SS18-217ENST00000580958 KRTAP3-1Q9BYR8 98 aa5.73□□□□□ -1.49
SS18-217ENST00000580958 PRR4Q16378 134 aa5.72□□□□□ -1.49
SS18-217ENST00000580958 C20orf166-AS1Q96NR2 134 aa5.72□□□□□ -1.49
SS18-217ENST00000580958 TMEM258P61165 79 aa5.71□□□□□ -1.5
SS18-217ENST00000580958 LOC101927531A0A1B0GV80 90 aa5.68□□□□□ -1.5
SS18-217ENST00000580958 PCLOQ9Y6V0 5065 aa5.67□□□□□ -1.5
SS18-217ENST00000580958 FAM236DA0A1B0GTK5 79 aa5.67□□□□□ -1.5
SS18-217ENST00000580958 FAM236CP0DP71 79 aa5.67□□□□□ -1.5
SS18-217ENST00000580958 PCOTHQ58A44 107 aa5.67□□□□□ -1.5
SS18-217ENST00000580958 Q75L30 129 aa5.67□□□□□ -1.5
SS18-217ENST00000580958 IGKV2-30P06310 120 aa5.66□□□□□ -1.5
SS18-217ENST00000580958 CYP4F30PQ9H0H9 118 aa5.65□□□□□ -1.5
SS18-217ENST00000580958 IGKV2D-30A0A075B6S6 120 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 91.6 ms