RNA–Protein interactions for RNA: ENST00000580287.5

CDK5RAP3-217, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,609 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-217ENST00000580287 IGLV8-61A0A075B6I0 122 aa7.65□□□□□ -1.18
CDK5RAP3-217ENST00000580287 IGLV9-49A0A0B4J1Y8 123 aa7.65□□□□□ -1.18
CDK5RAP3-217ENST00000580287 EPPK1P58107 5090 aaKnown RBP7.65□□□□□ -1.18
CDK5RAP3-217ENST00000580287 ZNF861PO60384 105 aa7.65□□□□□ -1.18
CDK5RAP3-217ENST00000580287 IGLV7-43P04211 117 aa7.65□□□□□ -1.18
CDK5RAP3-217ENST00000580287 C1orf64Q8NEQ6 169 aa7.65□□□□□ -1.18
CDK5RAP3-217ENST00000580287 SPRR1BP22528 89 aa7.65□□□□□ -1.19
CDK5RAP3-217ENST00000580287 NDUFS5O43920 106 aa7.63□□□□□ -1.19
CDK5RAP3-217ENST00000580287 WFDC13Q8IUB5 93 aa7.62□□□□□ -1.19
CDK5RAP3-217ENST00000580287 Q1T7F1 81 aa7.62□□□□□ -1.19
CDK5RAP3-217ENST00000580287 PRR4Q16378 134 aa7.59□□□□□ -1.19
CDK5RAP3-217ENST00000580287 PRR15Q8IV56 129 aa7.59□□□□□ -1.19
CDK5RAP3-217ENST00000580287 HCG22E2RYF7 251 aa7.59□□□□□ -1.19
CDK5RAP3-217ENST00000580287 KIAA1109Q2LD37 5005 aa7.57□□□□□ -1.2
CDK5RAP3-217ENST00000580287 CYP4F30PQ9H0H9 118 aa7.57□□□□□ -1.2
CDK5RAP3-217ENST00000580287 ZNF706Q9Y5V0 76 aaPredicted RBP7.57□□□□□ -1.2
CDK5RAP3-217ENST00000580287 A8MUN3 132 aa7.56□□□□□ -1.2
CDK5RAP3-217ENST00000580287 PSPHP1O15172 72 aa7.56□□□□□ -1.2
CDK5RAP3-217ENST00000580287 HSPG2P98160 4391 aa7.55□□□□□ -1.2
CDK5RAP3-217ENST00000580287 TRAV22A0A0B4J277 110 aa7.55□□□□□ -1.2
CDK5RAP3-217ENST00000580287 MOBPQ13875 183 aa7.55□□□□□ -1.2
CDK5RAP3-217ENST00000580287 KTN1-AS1Q86SY8 53 aa7.54□□□□□ -1.2
CDK5RAP3-217ENST00000580287 SEC61BP60468 96 aaKnown RBP7.53□□□□□ -1.2
CDK5RAP3-217ENST00000580287 KRTAP17-1Q9BYP8 105 aa7.53□□□□□ -1.2
CDK5RAP3-217ENST00000580287 LINC00313P59037 77 aa7.52□□□□□ -1.21
CDK5RAP3-217ENST00000580287 LINC00483Q53H64 154 aa7.52□□□□□ -1.21
CDK5RAP3-217ENST00000580287 NDUFB1O75438 58 aa7.51□□□□□ -1.21
CDK5RAP3-217ENST00000580287 LINC00472Q9H8W2 130 aa7.51□□□□□ -1.21
CDK5RAP3-217ENST00000580287 A0A087X002 238 aa7.5□□□□□ -1.21
CDK5RAP3-217ENST00000580287 KRTAP10-4P60372 401 aaPredicted RBP7.5□□□□□ -1.21
CDK5RAP3-217ENST00000580287 MP68P56378 58 aa7.49□□□□□ -1.21
CDK5RAP3-217ENST00000580287 RYR1P21817 5038 aa7.48□□□□□ -1.21
CDK5RAP3-217ENST00000580287 A8MWP4 228 aa7.48□□□□□ -1.21
CDK5RAP3-217ENST00000580287 LINC00208Q96KT6 92 aa7.48□□□□□ -1.21
CDK5RAP3-217ENST00000580287 KRTAP1-4P0C5Y4 121 aa7.48□□□□□ -1.21
CDK5RAP3-217ENST00000580287 CASC2Q6XLA1 102 aa7.47□□□□□ -1.21
CDK5RAP3-217ENST00000580287 KRTAP29-1A8MX34 341 aaPredicted RBP7.47□□□□□ -1.21
CDK5RAP3-217ENST00000580287 KRTAP13-2Q52LG2 175 aa7.45□□□□□ -1.22
CDK5RAP3-217ENST00000580287 H0Y9P7 68 aa7.44□□□□□ -1.22
CDK5RAP3-217ENST00000580287 Q5VV11 94 aa7.44□□□□□ -1.22
CDK5RAP3-217ENST00000580287 A8MU10 97 aa7.44□□□□□ -1.22
CDK5RAP3-217ENST00000580287 CDK2AP2O75956 126 aa7.44□□□□□ -1.22
CDK5RAP3-217ENST00000580287 Q5VSD8 79 aa7.43□□□□□ -1.22
CDK5RAP3-217ENST00000580287 SPINK6Q6UWN8 80 aa7.43□□□□□ -1.22
CDK5RAP3-217ENST00000580287 SPANXA2-OT1Q8N9U9 137 aa7.42□□□□□ -1.22
CDK5RAP3-217ENST00000580287 LRP1Q07954 4544 aaKnown RBP7.42□□□□□ -1.22
CDK5RAP3-217ENST00000580287 Q96NJ1 140 aa7.42□□□□□ -1.22
CDK5RAP3-217ENST00000580287 FLG2Q5D862 2391 aaPredicted RBP7.41□□□□□ -1.22
CDK5RAP3-217ENST00000580287 IGHV6-1A0A0B4J1U7 121 aa7.4□□□□□ -1.23
CDK5RAP3-217ENST00000580287 Q8N9P0 234 aaPredicted RBP7.4□□□□□ -1.23
CDK5RAP3-217ENST00000580287 H3BPC8 53 aa7.39□□□□□ -1.23
CDK5RAP3-217ENST00000580287 MMP24-AS1A0A0U1RRL7 71 aa7.38□□□□□ -1.23
CDK5RAP3-217ENST00000580287 MYCBP2O75592 4640 aa7.36□□□□□ -1.23
CDK5RAP3-217ENST00000580287 CHKB-CPT1BH3BT56 60 aa7.36□□□□□ -1.23
CDK5RAP3-217ENST00000580287 NOTCH2NLQ7Z3S9 236 aa7.36□□□□□ -1.23
CDK5RAP3-217ENST00000580287 LIMD2Q9BT23 127 aa7.36□□□□□ -1.23
CDK5RAP3-217ENST00000580287 PRR15LQ9BU68 103 aa7.36□□□□□ -1.23
CDK5RAP3-217ENST00000580287 LCA10Q71F78 164 aa7.34□□□□□ -1.23
CDK5RAP3-217ENST00000580287 TYMSOSQ8TAI1 123 aa7.34□□□□□ -1.23
CDK5RAP3-217ENST00000580287 C8orf17Q9NRJ1 99 aa7.34□□□□□ -1.23
CDK5RAP3-217ENST00000580287 A0A1B0GVX0 72 aa7.34□□□□□ -1.23
CDK5RAP3-217ENST00000580287 SSBP3-AS1Q7Z2R9 100 aa7.33□□□□□ -1.24
CDK5RAP3-217ENST00000580287 PKHD1L1Q86WI1 4243 aa7.33□□□□□ -1.24
CDK5RAP3-217ENST00000580287 COA5Q86WW8 74 aa7.32□□□□□ -1.24
CDK5RAP3-217ENST00000580287 KRTAP4-5Q9BYR2 181 aa7.32□□□□□ -1.24
CDK5RAP3-217ENST00000580287 Q8N1X5 172 aa7.31□□□□□ -1.24
CDK5RAP3-217ENST00000580287 PCOTHQ58A44 107 aa7.31□□□□□ -1.24
CDK5RAP3-217ENST00000580287 IGLV7-46A0A075B6I9 117 aa7.29□□□□□ -1.24
CDK5RAP3-217ENST00000580287 LOC101927531A0A1B0GV80 90 aa7.28□□□□□ -1.24
CDK5RAP3-217ENST00000580287 SPTSSBQ8NFR3 76 aa7.27□□□□□ -1.25
CDK5RAP3-217ENST00000580287 A6NED7 52 aa7.26□□□□□ -1.25
CDK5RAP3-217ENST00000580287 MRPL34Q9BQ48 92 aaKnown RBP7.26□□□□□ -1.25
CDK5RAP3-217ENST00000580287 ASB16-AS1Q495Z4 193 aa7.24□□□□□ -1.25
CDK5RAP3-217ENST00000580287 TP53AIP1Q9HCN2 124 aa7.24□□□□□ -1.25
CDK5RAP3-217ENST00000580287 LINC01554Q52M75 96 aa7.24□□□□□ -1.25
CDK5RAP3-217ENST00000580287 ATP11AUNQ6ZP68 121 aa7.23□□□□□ -1.25
CDK5RAP3-217ENST00000580287 LINC00304Q8N9R0 145 aa7.23□□□□□ -1.25
CDK5RAP3-217ENST00000580287 DMBT1Q9UGM3 2413 aaPredicted RBP7.23□□□□□ -1.25
CDK5RAP3-217ENST00000580287 FAT3Q8TDW7 4589 aa7.23□□□□□ -1.25
CDK5RAP3-217ENST00000580287 BIRC6Q9NR09 4857 aa7.22□□□□□ -1.25
CDK5RAP3-217ENST00000580287 TNXBP22105 4242 aa7.22□□□□□ -1.25
CDK5RAP3-217ENST00000580287 PRAC1Q96KF2 57 aa7.22□□□□□ -1.25
CDK5RAP3-217ENST00000580287 SPAG11AQ6PDA7 123 aa7.2□□□□□ -1.26
CDK5RAP3-217ENST00000580287 A6NN06 94 aa7.2□□□□□ -1.26
CDK5RAP3-217ENST00000580287 ABCA13Q86UQ4 5058 aa7.19□□□□□ -1.26
CDK5RAP3-217ENST00000580287 CDC42SE1Q9NRR8 79 aa7.19□□□□□ -1.26
CDK5RAP3-217ENST00000580287 LINC01558Q9Y6Z2 57 aa7.19□□□□□ -1.26
CDK5RAP3-217ENST00000580287 Q5W150 140 aa7.18□□□□□ -1.26
CDK5RAP3-217ENST00000580287 RETNLBQ9BQ08 111 aa7.18□□□□□ -1.26
CDK5RAP3-217ENST00000580287 SPINK1P00995 79 aa7.18□□□□□ -1.26
CDK5RAP3-217ENST00000580287 KRTAP10-8P60410 259 aa7.18□□□□□ -1.26
CDK5RAP3-217ENST00000580287 ADM2Q7Z4H4 148 aa7.17□□□□□ -1.26
CDK5RAP3-217ENST00000580287 HRES1P13985 223 aa7.16□□□□□ -1.26
CDK5RAP3-217ENST00000580287 HERC2O95714 4834 aa7.15□□□□□ -1.27
CDK5RAP3-217ENST00000580287 C7orf65Q6ZTY9 151 aa7.14□□□□□ -1.27
CDK5RAP3-217ENST00000580287 MT1HL1P0DM35 61 aa7.14□□□□□ -1.27
CDK5RAP3-217ENST00000580287 SPINK7P58062 85 aa7.14□□□□□ -1.27
CDK5RAP3-217ENST00000580287 RPS29P62273 56 aaKnown RBP7.05□□□□□ -1.28
CDK5RAP3-217ENST00000580287 KRTAP13-3Q3SY46 172 aa7.05□□□□□ -1.28
CDK5RAP3-217ENST00000580287 KRTAP16-1A8MUX0 517 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms