RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 ACYP1P07311 99 aa-2.3□□□□□ -2.78
SS18-214ENST00000580003 PMCHL1Q16048 86 aa-2.3□□□□□ -2.78
SS18-214ENST00000580003 RPL13AP3Q6NVV1 102 aa-2.3□□□□□ -2.78
SS18-214ENST00000580003 TJP1Q07157 1748 aa-2.31□□□□□ -2.78
SS18-214ENST00000580003 CLASP1Q7Z460 1538 aa-2.31□□□□□ -2.78
SS18-214ENST00000580003 NDUFC1O43677 76 aa-2.31□□□□□ -2.78
SS18-214ENST00000580003 NCBP2-AS2Q69YL0 99 aa-2.31□□□□□ -2.78
SS18-214ENST00000580003 LRRC9Q6ZRR7 1453 aa-2.32□□□□□ -2.78
SS18-214ENST00000580003 ABCC5O15440 1437 aa-2.32□□□□□ -2.78
SS18-214ENST00000580003 RGPD1P0DJD0 1748 aa-2.32□□□□□ -2.78
SS18-214ENST00000580003 C5P01031 1676 aa-2.32□□□□□ -2.78
SS18-214ENST00000580003 NWD1Q149M9 1564 aa-2.32□□□□□ -2.78
SS18-214ENST00000580003 CACFD1Q9UGQ2 172 aa-2.33□□□□□ -2.78
SS18-214ENST00000580003 CD163L1Q9NR16 1453 aa-2.33□□□□□ -2.78
SS18-214ENST00000580003 TRBV25-1A0A075B6N4 114 aa-2.34□□□□□ -2.78
SS18-214ENST00000580003 CORTO00230 105 aa-2.35□□□□□ -2.79
SS18-214ENST00000580003 AP4S1Q9Y587 144 aa-2.35□□□□□ -2.79
SS18-214ENST00000580003 ITSN1Q15811 1721 aa-2.36□□□□□ -2.79
SS18-214ENST00000580003 H3BUA1 57 aa-2.36□□□□□ -2.79
SS18-214ENST00000580003 SFTA3P0C7M3 94 aa-2.36□□□□□ -2.79
SS18-214ENST00000580003 IGLC2P0DOY2 106 aa-2.36□□□□□ -2.79
SS18-214ENST00000580003 IGLC3P0DOY3 106 aa-2.36□□□□□ -2.79
SS18-214ENST00000580003 S100PP25815 95 aa-2.36□□□□□ -2.79
SS18-214ENST00000580003 MRPS10P82664 201 aaKnown RBP-2.36□□□□□ -2.79
SS18-214ENST00000580003 BVES-AS1Q5T3Y7 98 aa-2.36□□□□□ -2.79
SS18-214ENST00000580003 MAP3K4Q9Y6R4 1608 aa-2.36□□□□□ -2.79
SS18-214ENST00000580003 NEXMIFQ5QGS0 1516 aa-2.37□□□□□ -2.79
SS18-214ENST00000580003 KIAA0586Q9BVV6 1533 aa-2.37□□□□□ -2.79
SS18-214ENST00000580003 NRXN1Q9ULB1 1477 aa-2.37□□□□□ -2.79
SS18-214ENST00000580003 hADV29S1A0JD25 119 aa-2.37□□□□□ -2.79
SS18-214ENST00000580003 LEPROTL1O95214 131 aa-2.37□□□□□ -2.79
SS18-214ENST00000580003 DDX60LQ5H9U9 1706 aaKnown RBP-2.37□□□□□ -2.79
SS18-214ENST00000580003 FAM135AQ9P2D6 1515 aa-2.37□□□□□ -2.79
SS18-214ENST00000580003 BAZ1AQ9NRL2 1556 aaPredicted RBP-2.38□□□□□ -2.79
SS18-214ENST00000580003 NHSQ6T4R5 1651 aa-2.38□□□□□ -2.79
SS18-214ENST00000580003 ABCC2Q92887 1545 aa-2.38□□□□□ -2.79
SS18-214ENST00000580003 KIF14Q15058 1648 aa-2.39□□□□□ -2.79
SS18-214ENST00000580003 NRAPQ86VF7 1730 aa-2.39□□□□□ -2.79
SS18-214ENST00000580003 MPC2O95563 127 aa-2.39□□□□□ -2.79
SS18-214ENST00000580003 FAM208AQ9UK61 1670 aaKnown RBP-2.4□□□□□ -2.79
SS18-214ENST00000580003 GOLGB1Q14789 3259 aaKnown RBP-2.4□□□□□ -2.79
SS18-214ENST00000580003 PPLO60437 1756 aa-2.4□□□□□ -2.79
SS18-214ENST00000580003 TRAV21A0A0B4J279 112 aa-2.4□□□□□ -2.79
SS18-214ENST00000580003 DLEU1O43261 78 aa-2.4□□□□□ -2.79
SS18-214ENST00000580003 PREX2Q70Z35 1606 aa-2.4□□□□□ -2.79
SS18-214ENST00000580003 CHD1O14646 1710 aa-2.4□□□□□ -2.79
SS18-214ENST00000580003 MYH4Q9Y623 1939 aa-2.4□□□□□ -2.79
SS18-214ENST00000580003 LMO7Q8WWI1 1683 aa-2.41□□□□□ -2.79
SS18-214ENST00000580003 CC2D2AQ9P2K1 1620 aa-2.41□□□□□ -2.8
SS18-214ENST00000580003 RICTORQ6R327 1708 aa-2.41□□□□□ -2.8
SS18-214ENST00000580003 ABCA3Q99758 1704 aa-2.41□□□□□ -2.8
SS18-214ENST00000580003 EFCAB10A6NFE3 127 aa-2.41□□□□□ -2.8
SS18-214ENST00000580003 UQCRHP07919 91 aa-2.41□□□□□ -2.8
SS18-214ENST00000580003 S100A1P23297 94 aa-2.41□□□□□ -2.8
SS18-214ENST00000580003 GTF2H5Q6ZYL4 71 aa-2.41□□□□□ -2.8
SS18-214ENST00000580003 CRIP1P50238 77 aa-2.42□□□□□ -2.8
SS18-214ENST00000580003 RPL38P63173 70 aaKnown RBP-2.42□□□□□ -2.8
SS18-214ENST00000580003 LTN1O94822 1766 aa-2.42□□□□□ -2.8
SS18-214ENST00000580003 DIP2BQ9P265 1576 aa-2.43□□□□□ -2.8
SS18-214ENST00000580003 PZPP20742 1482 aa-2.43□□□□□ -2.8
SS18-214ENST00000580003 ALKAL2Q6UX46 152 aa-2.43□□□□□ -2.8
SS18-214ENST00000580003 ANKRD26Q9UPS8 1709 aa-2.43□□□□□ -2.8
SS18-214ENST00000580003 RNF17Q9BXT8 1623 aaKnown RBP-2.43□□□□□ -2.8
SS18-214ENST00000580003 HMGA1P17096 107 aaKnown RBP-2.44□□□□□ -2.8
SS18-214ENST00000580003 MINOS1Q5TGZ0 78 aa-2.44□□□□□ -2.8
SS18-214ENST00000580003 GAFA1Q96PS6 74 aa-2.44□□□□□ -2.8
SS18-214ENST00000580003 POLR2KP53803 58 aaKnown RBP-2.45□□□□□ -2.8
SS18-214ENST00000580003 HMGN3Q15651 99 aa-2.45□□□□□ -2.8
SS18-214ENST00000580003 C6orf48Q9UBA6 75 aa-2.45□□□□□ -2.8
SS18-214ENST00000580003 ANKRD36BQ8N2N9 1353 aa-2.46□□□□□ -2.8
SS18-214ENST00000580003 DEFB131BA0A096LNP1 70 aa-2.46□□□□□ -2.8
SS18-214ENST00000580003 FCER1GP30273 86 aa-2.46□□□□□ -2.8
SS18-214ENST00000580003 CCDC88BA6NC98 1476 aa-2.46□□□□□ -2.8
SS18-214ENST00000580003 TMEM203Q969S6 136 aa-2.47□□□□□ -2.8
SS18-214ENST00000580003 GNG8Q9UK08 70 aa-2.47□□□□□ -2.8
SS18-214ENST00000580003 RAPGEF2Q9Y4G8 1499 aa-2.47□□□□□ -2.81
SS18-214ENST00000580003 INO80Q9ULG1 1556 aaPredicted RBP-2.48□□□□□ -2.81
SS18-214ENST00000580003 UACAQ9BZF9 1416 aa-2.48□□□□□ -2.81
SS18-214ENST00000580003 MYO5CQ9NQX4 1742 aa-2.48□□□□□ -2.81
SS18-214ENST00000580003 A0A1B0GV90 55 aa-2.49□□□□□ -2.81
SS18-214ENST00000580003 TMEM218A2RU14 115 aa-2.49□□□□□ -2.81
SS18-214ENST00000580003 IQCF6A8MYZ5 107 aa-2.49□□□□□ -2.81
SS18-214ENST00000580003 C20orf78Q9BR46 151 aa-2.49□□□□□ -2.81
SS18-214ENST00000580003 KAAG1Q9UBP8 84 aa-2.49□□□□□ -2.81
SS18-214ENST00000580003 ARFGEF2Q9Y6D5 1785 aa-2.49□□□□□ -2.81
SS18-214ENST00000580003 CCNB3Q8WWL7 1395 aa-2.49□□□□□ -2.81
SS18-214ENST00000580003 GNGT2O14610 69 aa-2.5□□□□□ -2.81
SS18-214ENST00000580003 CCDC180Q9P1Z9 1646 aa-2.5□□□□□ -2.81
SS18-214ENST00000580003 DEFB133Q30KQ1 61 aa-2.51□□□□□ -2.81
SS18-214ENST00000580003 MUSTN1Q8IVN3 82 aa-2.51□□□□□ -2.81
SS18-214ENST00000580003 SCRIBQ14160 1630 aa-2.52□□□□□ -2.81
SS18-214ENST00000580003 D6R8Y8 96 aa-2.53□□□□□ -2.81
SS18-214ENST00000580003 NDUFA4O00483 81 aa-2.53□□□□□ -2.81
SS18-214ENST00000580003 DEFB104AQ8WTQ1 72 aa-2.53□□□□□ -2.81
SS18-214ENST00000580003 C3P01024 1663 aa-2.53□□□□□ -2.82
SS18-214ENST00000580003 CFAP43Q8NDM7 1665 aa-2.53□□□□□ -2.82
SS18-214ENST00000580003 A0A1B0GUT8 65 aa-2.54□□□□□ -2.82
SS18-214ENST00000580003 ZNF720Q7Z2F6 126 aa-2.55□□□□□ -2.82
SS18-214ENST00000580003 KCNQ1DNQ9H478 68 aa-2.55□□□□□ -2.82
SS18-214ENST00000580003 EIF2AK4Q9P2K8 1649 aaKnown RBP-2.56□□□□□ -2.82
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms