RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 LINC00483Q53H64 154 aa1.78□□□□□ -2.12
SMCHD1-203ENST00000577880 KIAA1109Q2LD37 5005 aa1.78□□□□□ -2.12
SMCHD1-203ENST00000577880 CRYBG3Q68DQ2 2970 aa1.78□□□□□ -2.12
SMCHD1-203ENST00000577880 C4orf26Q17RF5 130 aa1.78□□□□□ -2.12
SMCHD1-203ENST00000577880 DSPP15924 2871 aaKnown RBP1.78□□□□□ -2.13
SMCHD1-203ENST00000577880 DNAH7Q8WXX0 4024 aa1.77□□□□□ -2.13
SMCHD1-203ENST00000577880 A0A1W2PNM2 257 aa1.77□□□□□ -2.13
SMCHD1-203ENST00000577880 HIVEP1P15822 2718 aa1.77□□□□□ -2.13
SMCHD1-203ENST00000577880 LCA10Q71F78 164 aa1.77□□□□□ -2.13
SMCHD1-203ENST00000577880 BOD1L1Q8NFC6 3051 aa1.77□□□□□ -2.13
SMCHD1-203ENST00000577880 COA5Q86WW8 74 aa1.77□□□□□ -2.13
SMCHD1-203ENST00000577880 DNAH1Q9P2D7 4330 aa1.76□□□□□ -2.13
SMCHD1-203ENST00000577880 CDC42SE1Q9NRR8 79 aa1.76□□□□□ -2.13
SMCHD1-203ENST00000577880 KMT2CQ8NEZ4 4911 aaKnown RBP1.76□□□□□ -2.13
SMCHD1-203ENST00000577880 CCDC179H3BU77 68 aa1.76□□□□□ -2.13
SMCHD1-203ENST00000577880 MIR22HGQ0VDD5 57 aa1.76□□□□□ -2.13
SMCHD1-203ENST00000577880 HECTD4Q9Y4D8 3996 aa1.75□□□□□ -2.13
SMCHD1-203ENST00000577880 SPRR1BP22528 89 aa1.75□□□□□ -2.13
SMCHD1-203ENST00000577880 C1orf195Q5TG92 126 aa1.75□□□□□ -2.13
SMCHD1-203ENST00000577880 SPRR1AP35321 89 aa1.74□□□□□ -2.13
SMCHD1-203ENST00000577880 DYNC2H1Q8NCM8 4307 aaKnown RBP1.74□□□□□ -2.13
SMCHD1-203ENST00000577880 M0QZ58 72 aa1.74□□□□□ -2.13
SMCHD1-203ENST00000577880 C20orf166-AS1Q96NR2 134 aa1.74□□□□□ -2.13
SMCHD1-203ENST00000577880 LUZP6Q538Z0 58 aa1.74□□□□□ -2.13
SMCHD1-203ENST00000577880 A0A1B0GU33 70 aa1.73□□□□□ -2.13
SMCHD1-203ENST00000577880 RPS29P62273 56 aaKnown RBP1.73□□□□□ -2.13
SMCHD1-203ENST00000577880 EIF4EBP3O60516 100 aaPredicted RBP1.73□□□□□ -2.13
SMCHD1-203ENST00000577880 RPS28P62857 69 aaKnown RBP1.73□□□□□ -2.13
SMCHD1-203ENST00000577880 HYDINQ4G0P3 5121 aa1.73□□□□□ -2.13
SMCHD1-203ENST00000577880 CYP4F30PQ9H0H9 118 aa1.72□□□□□ -2.13
SMCHD1-203ENST00000577880 H7BZZ5 65 aa1.72□□□□□ -2.13
SMCHD1-203ENST00000577880 PRKDCP78527 4128 aaKnown RBP1.72□□□□□ -2.13
SMCHD1-203ENST00000577880 DMAC1Q96GE9 116 aa1.72□□□□□ -2.13
SMCHD1-203ENST00000577880 SVEP1Q4LDE5 3571 aa1.72□□□□□ -2.13
SMCHD1-203ENST00000577880 Q6ZRN7 208 aaPredicted RBP1.71□□□□□ -2.13
SMCHD1-203ENST00000577880 TENM3Q9P273 2699 aa1.71□□□□□ -2.14
SMCHD1-203ENST00000577880 A0A087X002 238 aa1.71□□□□□ -2.14
SMCHD1-203ENST00000577880 KRTAP26-1Q6PEX3 210 aa1.71□□□□□ -2.14
SMCHD1-203ENST00000577880 PANO1I0J062 215 aa1.71□□□□□ -2.14
SMCHD1-203ENST00000577880 H1FX-AS1Q4G0G2 97 aa1.71□□□□□ -2.14
SMCHD1-203ENST00000577880 LRBAP50851 2863 aa1.71□□□□□ -2.14
SMCHD1-203ENST00000577880 CELSR2Q9HCU4 2923 aa1.71□□□□□ -2.14
SMCHD1-203ENST00000577880 LORP23490 312 aaPredicted RBP1.71□□□□□ -2.14
SMCHD1-203ENST00000577880 SPANXA2-OT1Q8N9U9 137 aa1.71□□□□□ -2.14
SMCHD1-203ENST00000577880 ANK3Q12955 4377 aaKnown RBP1.71□□□□□ -2.14
SMCHD1-203ENST00000577880 SMCPP49901 116 aaPredicted RBP1.7□□□□□ -2.14
SMCHD1-203ENST00000577880 Q5W150 140 aa1.7□□□□□ -2.14
SMCHD1-203ENST00000577880 TRRAPQ9Y4A5 3859 aa1.7□□□□□ -2.14
SMCHD1-203ENST00000577880 MMP24-AS1A0A0U1RRL7 71 aa1.7□□□□□ -2.14
SMCHD1-203ENST00000577880 Q8N9P0 234 aaPredicted RBP1.7□□□□□ -2.14
SMCHD1-203ENST00000577880 FRAS1Q86XX4 4008 aa1.69□□□□□ -2.14
SMCHD1-203ENST00000577880 RPL37P61927 97 aaKnown RBP1.69□□□□□ -2.14
SMCHD1-203ENST00000577880 Q1T7F1 81 aa1.69□□□□□ -2.14
SMCHD1-203ENST00000577880 LINC00472Q9H8W2 130 aa1.69□□□□□ -2.14
SMCHD1-203ENST00000577880 Q75L30 129 aa1.69□□□□□ -2.14
SMCHD1-203ENST00000577880 ADM2Q7Z4H4 148 aa1.68□□□□□ -2.14
SMCHD1-203ENST00000577880 PRO0461Q9UI25 63 aa1.68□□□□□ -2.14
SMCHD1-203ENST00000577880 TENM2Q9NT68 2774 aa1.68□□□□□ -2.14
SMCHD1-203ENST00000577880 KRTAP29-1A8MX34 341 aaPredicted RBP1.68□□□□□ -2.14
SMCHD1-203ENST00000577880 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.68□□□□□ -2.14
SMCHD1-203ENST00000577880 DCHS2Q6V1P9 2916 aa1.68□□□□□ -2.14
SMCHD1-203ENST00000577880 TENM1Q9UKZ4 2725 aa1.68□□□□□ -2.14
SMCHD1-203ENST00000577880 NBEAL2Q6ZNJ1 2754 aa1.67□□□□□ -2.14
SMCHD1-203ENST00000577880 KLKP1Q107X0 134 aa1.67□□□□□ -2.14
SMCHD1-203ENST00000577880 EPPK1P58107 5090 aaKnown RBP1.67□□□□□ -2.14
SMCHD1-203ENST00000577880 DNAH6Q9C0G6 4158 aa1.67□□□□□ -2.14
SMCHD1-203ENST00000577880 LOC100996750A0A140TA64 210 aa1.67□□□□□ -2.14
SMCHD1-203ENST00000577880 KRTAP4-6Q9BYQ5 205 aa1.67□□□□□ -2.14
SMCHD1-203ENST00000577880 KRTAP20-1Q3LI63 56 aa1.66□□□□□ -2.14
SMCHD1-203ENST00000577880 ASB16-AS1Q495Z4 193 aa1.66□□□□□ -2.14
SMCHD1-203ENST00000577880 HERC1Q15751 4861 aa1.66□□□□□ -2.14
SMCHD1-203ENST00000577880 A8MUU9 505 aa1.66□□□□□ -2.14
SMCHD1-203ENST00000577880 RYR1P21817 5038 aa1.66□□□□□ -2.14
SMCHD1-203ENST00000577880 MEGF8Q7Z7M0 2845 aa1.66□□□□□ -2.14
SMCHD1-203ENST00000577880 KRTAP10-10P60014 251 aa1.66□□□□□ -2.14
SMCHD1-203ENST00000577880 HUWE1Q7Z6Z7 4374 aaKnown RBP1.66□□□□□ -2.14
SMCHD1-203ENST00000577880 VWFP04275 2813 aa1.65□□□□□ -2.15
SMCHD1-203ENST00000577880 NIPBLQ6KC79 2804 aaeCLIP1.65□□□□□ -2.155e-6■□□□□ 10.4
SMCHD1-203ENST00000577880 TPRXLQ17RH7 258 aa1.65□□□□□ -2.15
SMCHD1-203ENST00000577880 CSMD3Q7Z407 3707 aa1.65□□□□□ -2.15
SMCHD1-203ENST00000577880 KRTAP13-2Q52LG2 175 aa1.65□□□□□ -2.15
SMCHD1-203ENST00000577880 Q5XG85 94 aa1.65□□□□□ -2.15
SMCHD1-203ENST00000577880 KMT2AQ03164 3969 aa1.65□□□□□ -2.15
SMCHD1-203ENST00000577880 TACC2O95359 2948 aa1.65□□□□□ -2.15
SMCHD1-203ENST00000577880 Q8NDZ9 215 aa1.65□□□□□ -2.15
SMCHD1-203ENST00000577880 PRO2289Q9P1D8 64 aa1.64□□□□□ -2.15
SMCHD1-203ENST00000577880 COL12A1Q99715 3063 aa1.64□□□□□ -2.15
SMCHD1-203ENST00000577880 FAT2Q9NYQ8 4349 aa1.64□□□□□ -2.15
SMCHD1-203ENST00000577880 OCR1Q9BZK8 76 aa1.64□□□□□ -2.15
SMCHD1-203ENST00000577880 PRO0628Q9UI54 55 aa1.63□□□□□ -2.15
SMCHD1-203ENST00000577880 LRP1BQ9NZR2 4599 aa1.63□□□□□ -2.15
SMCHD1-203ENST00000577880 KRTAP4-16G5E9R7 235 aaPredicted RBP1.63□□□□□ -2.15
SMCHD1-203ENST00000577880 A0A1B0GVY2 172 aa1.62□□□□□ -2.15
SMCHD1-203ENST00000577880 ADGRG4Q8IZF6 3080 aa1.62□□□□□ -2.15
SMCHD1-203ENST00000577880 KRTAP10-8P60410 259 aa1.62□□□□□ -2.15
SMCHD1-203ENST00000577880 PKHD1P08F94 4074 aa1.62□□□□□ -2.15
SMCHD1-203ENST00000577880 APCP25054 2843 aa1.62□□□□□ -2.15
SMCHD1-203ENST00000577880 SACSQ9NZJ4 4579 aa1.62□□□□□ -2.15
SMCHD1-203ENST00000577880 GPR98Q8WXG9 6306 aa1.62□□□□□ -2.15
SMCHD1-203ENST00000577880 TNP1P09430 55 aa1.61□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 156.4 ms