RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 TRBV7-4A0A0J9YYF1 115 aa4.33□□□□□ -1.72
VPS53-214ENST00000572607 SMIM6P0DI80 62 aa4.33□□□□□ -1.72
VPS53-214ENST00000572607 UBE2V1Q13404 147 aa4.33□□□□□ -1.72
VPS53-214ENST00000572607 LCE1AQ5T7P2 110 aa4.33□□□□□ -1.72
VPS53-214ENST00000572607 ATP11AUNQ6ZP68 121 aa4.33□□□□□ -1.72
VPS53-214ENST00000572607 Q96NJ1 140 aa4.33□□□□□ -1.72
VPS53-214ENST00000572607 SIGMAR1Q99720 223 aa4.33□□□□□ -1.72
VPS53-214ENST00000572607 A0A1W2PNM2 257 aa4.32□□□□□ -1.72
VPS53-214ENST00000572607 CCKP06307 115 aa4.31□□□□□ -1.72
VPS53-214ENST00000572607 Q75L30 129 aa4.31□□□□□ -1.72
VPS53-214ENST00000572607 DSCR8Q96T75 97 aa4.31□□□□□ -1.72
VPS53-214ENST00000572607 VPS25Q9BRG1 176 aa4.31□□□□□ -1.72
VPS53-214ENST00000572607 TSTD3H0UI37 97 aa4.3□□□□□ -1.72
VPS53-214ENST00000572607 RBM3P98179 157 aaKnown RBP4.3□□□□□ -1.72
VPS53-214ENST00000572607 KRTAP19-2Q3LHN2 52 aa4.3□□□□□ -1.72
VPS53-214ENST00000572607 PCP4L1A6NKN8 68 aa4.29□□□□□ -1.72
VPS53-214ENST00000572607 IGKV4-1P06312 121 aa4.29□□□□□ -1.72
VPS53-214ENST00000572607 BAALC-AS2P0C853 105 aa4.29□□□□□ -1.72
VPS53-214ENST00000572607 ATXN8Q156A1 80 aa4.29□□□□□ -1.72
VPS53-214ENST00000572607 LYRM7Q5U5X0 104 aa4.29□□□□□ -1.72
VPS53-214ENST00000572607 COX6B2Q6YFQ2 88 aa4.29□□□□□ -1.72
VPS53-214ENST00000572607 DSCR10P59022 87 aa4.28□□□□□ -1.72
VPS53-214ENST00000572607 C9JAW5 83 aa4.27□□□□□ -1.73
VPS53-214ENST00000572607 LINC00313P59037 77 aa4.27□□□□□ -1.73
VPS53-214ENST00000572607 JMJD7-PLA2G4BH0Y9G9 81 aa4.26□□□□□ -1.73
VPS53-214ENST00000572607 PCP4P48539 62 aa4.26□□□□□ -1.73
VPS53-214ENST00000572607 BATFQ16520 125 aa4.26□□□□□ -1.73
VPS53-214ENST00000572607 C20orf166-AS1Q96NR2 134 aa4.26□□□□□ -1.73
VPS53-214ENST00000572607 NAA38Q9BRA0 125 aaKnown RBP4.26□□□□□ -1.73
VPS53-214ENST00000572607 FLGP20930 4061 aaPredicted RBP4.26□□□□□ -1.73
VPS53-214ENST00000572607 A8MUU9 505 aa4.25□□□□□ -1.73
VPS53-214ENST00000572607 DEFB116Q30KQ4 102 aa4.25□□□□□ -1.73
VPS53-214ENST00000572607 LINC00472Q9H8W2 130 aa4.25□□□□□ -1.73
VPS53-214ENST00000572607 TRBV20-1A0A075B6N2 111 aa4.24□□□□□ -1.73
VPS53-214ENST00000572607 IGHV6-1A0A0B4J1U7 121 aa4.24□□□□□ -1.73
VPS53-214ENST00000572607 M0R2T5 61 aa4.24□□□□□ -1.73
VPS53-214ENST00000572607 C8orf87E5RJ46 101 aa4.23□□□□□ -1.73
VPS53-214ENST00000572607 J3KT08 172 aa4.23□□□□□ -1.73
VPS53-214ENST00000572607 PDE6GP18545 87 aa4.23□□□□□ -1.73
VPS53-214ENST00000572607 MT1HP80294 61 aa4.23□□□□□ -1.73
VPS53-214ENST00000572607 Q8N9P0 234 aaPredicted RBP4.23□□□□□ -1.73
VPS53-214ENST00000572607 A0A1B0GW54 56 aa4.22□□□□□ -1.73
VPS53-214ENST00000572607 LOC110117498A0A087WWA1 95 aa4.21□□□□□ -1.74
VPS53-214ENST00000572607 A0A1B0GVX0 72 aa4.21□□□□□ -1.74
VPS53-214ENST00000572607 NDUFB1O75438 58 aa4.21□□□□□ -1.74
VPS53-214ENST00000572607 Q6ZQT0 140 aa4.2□□□□□ -1.74
VPS53-214ENST00000572607 KRTAP16-1A8MUX0 517 aa4.19□□□□□ -1.74
VPS53-214ENST00000572607 C14orf132Q9NPU4 83 aa4.19□□□□□ -1.74
VPS53-214ENST00000572607 H3BT86 120 aa4.18□□□□□ -1.74
VPS53-214ENST00000572607 KRTAP10-6P60371 365 aaPredicted RBP4.18□□□□□ -1.74
VPS53-214ENST00000572607 A0A1W2PPM0 123 aa4.17□□□□□ -1.74
VPS53-214ENST00000572607 NREPQ16612 68 aa4.17□□□□□ -1.74
VPS53-214ENST00000572607 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.17□□□□□ -1.74
VPS53-214ENST00000572607 NOTCH2NLQ7Z3S9 236 aa4.17□□□□□ -1.74
VPS53-214ENST00000572607 SSPOA2VEC9 5147 aa4.16□□□□□ -1.74
VPS53-214ENST00000572607 FAM236DA0A1B0GTK5 79 aa4.16□□□□□ -1.74
VPS53-214ENST00000572607 A8MWP4 228 aa4.16□□□□□ -1.74
VPS53-214ENST00000572607 TAX1BP3O14907 124 aa4.16□□□□□ -1.74
VPS53-214ENST00000572607 FAM236CP0DP71 79 aa4.16□□□□□ -1.74
VPS53-214ENST00000572607 RBM12B-AS1Q9P1G2 102 aa4.15□□□□□ -1.75
VPS53-214ENST00000572607 KRTAP10-7P60409 375 aaPredicted RBP4.14□□□□□ -1.75
VPS53-214ENST00000572607 C8orf17Q9NRJ1 99 aa4.14□□□□□ -1.75
VPS53-214ENST00000572607 SPCS1Q9Y6A9 102 aa4.14□□□□□ -1.75
VPS53-214ENST00000572607 MTURNQ8N3F0 131 aa4.13□□□□□ -1.75
VPS53-214ENST00000572607 ZCCHC13Q8WW36 166 aaKnown RBP4.13□□□□□ -1.75
VPS53-214ENST00000572607 USH2AO75445 5202 aa4.13□□□□□ -1.75
VPS53-214ENST00000572607 IGKV3D-7A0A0C4DH55 119 aa4.12□□□□□ -1.75
VPS53-214ENST00000572607 COL5A1-AS1Q5SY13 56 aa4.11□□□□□ -1.75
VPS53-214ENST00000572607 Q6ZVQ6 151 aa4.11□□□□□ -1.75
VPS53-214ENST00000572607 PRR15Q8IV56 129 aa4.11□□□□□ -1.75
VPS53-214ENST00000572607 BPY2O14599 106 aa4.09□□□□□ -1.75
VPS53-214ENST00000572607 HRES1P13985 223 aa4.09□□□□□ -1.75
VPS53-214ENST00000572607 KRTAP5-11Q6L8G4 156 aa4.09□□□□□ -1.75
VPS53-214ENST00000572607 TMEM254Q8TBM7 123 aa4.09□□□□□ -1.75
VPS53-214ENST00000572607 FCGBPQ9Y6R7 5405 aaPredicted RBP4.08□□□□□ -1.76
VPS53-214ENST00000572607 SPINK7P58062 85 aa4.08□□□□□ -1.76
VPS53-214ENST00000572607 MRPL34Q9BQ48 92 aaKnown RBP4.08□□□□□ -1.76
VPS53-214ENST00000572607 MMP24-AS1A0A0U1RRL7 71 aa4.07□□□□□ -1.76
VPS53-214ENST00000572607 A0A1B0GV90 55 aa4.07□□□□□ -1.76
VPS53-214ENST00000572607 K7EQZ3 153 aa4.07□□□□□ -1.76
VPS53-214ENST00000572607 NDUFS5O43920 106 aa4.07□□□□□ -1.76
VPS53-214ENST00000572607 hDV103S1A0JD37 113 aa4.06□□□□□ -1.76
VPS53-214ENST00000572607 K7EP34 96 aa4.06□□□□□ -1.76
VPS53-214ENST00000572607 MPLKIPQ8TAP9 179 aa4.06□□□□□ -1.76
VPS53-214ENST00000572607 IGKV2-30P06310 120 aa4.05□□□□□ -1.76
VPS53-214ENST00000572607 GTF2H5Q6ZYL4 71 aa4.04□□□□□ -1.76
VPS53-214ENST00000572607 WFDC13Q8IUB5 93 aa4.04□□□□□ -1.76
VPS53-214ENST00000572607 KRTAP2-2Q9BYT5 123 aa4.04□□□□□ -1.76
VPS53-214ENST00000572607 UBL5Q9BZL1 73 aa4.04□□□□□ -1.76
VPS53-214ENST00000572607 CASC2Q6XLA1 102 aa4.02□□□□□ -1.77
VPS53-214ENST00000572607 PRO0461Q9UI25 63 aa4.02□□□□□ -1.77
VPS53-214ENST00000572607 Q8N9L7 120 aa4.01□□□□□ -1.77
VPS53-214ENST00000572607 LINC00846Q9NV44 126 aa4□□□□□ -1.77
VPS53-214ENST00000572607 IGKV2D-30A0A075B6S6 120 aa3.99□□□□□ -1.77
VPS53-214ENST00000572607 HCG22E2RYF7 251 aa3.99□□□□□ -1.77
VPS53-214ENST00000572607 F8W1H4 67 aa3.99□□□□□ -1.77
VPS53-214ENST00000572607 CXCL6P80162 114 aa3.98□□□□□ -1.77
VPS53-214ENST00000572607 C7orf65Q6ZTY9 151 aa3.98□□□□□ -1.77
VPS53-214ENST00000572607 MACF1Q9UPN3 7388 aaKnown RBP3.97□□□□□ -1.77
VPS53-214ENST00000572607 SYNE2Q8WXH0 6885 aaKnown RBP3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms