RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 A0A1B0GVX0 72 aa10.41□□□□□ -0.74
NUP88-204ENST00000572290 J3KT08 172 aa10.41□□□□□ -0.74
NUP88-204ENST00000572290 C8orf87E5RJ46 101 aa10.4□□□□□ -0.74
NUP88-204ENST00000572290 PDE6GP18545 87 aa10.4□□□□□ -0.74
NUP88-204ENST00000572290 A0A1B0GW54 56 aa10.39□□□□□ -0.75
NUP88-204ENST00000572290 M0R2T5 61 aa10.39□□□□□ -0.75
NUP88-204ENST00000572290 C9orf118A6NHY6 69 aa10.38□□□□□ -0.75
NUP88-204ENST00000572290 C14orf132Q9NPU4 83 aa10.37□□□□□ -0.75
NUP88-204ENST00000572290 TAX1BP3O14907 124 aa10.36□□□□□ -0.75
NUP88-204ENST00000572290 FLGP20930 4061 aaPredicted RBP10.34□□□□□ -0.75
NUP88-204ENST00000572290 LCE2DQ5TA82 110 aaPredicted RBP10.34□□□□□ -0.75
NUP88-204ENST00000572290 A0A1W2PPM0 123 aa10.33□□□□□ -0.76
NUP88-204ENST00000572290 NDUFB1O75438 58 aa10.33□□□□□ -0.76
NUP88-204ENST00000572290 KRTAP10-6P60371 365 aaPredicted RBP10.33□□□□□ -0.76
NUP88-204ENST00000572290 LORP23490 312 aaPredicted RBP10.32□□□□□ -0.76
NUP88-204ENST00000572290 H3BT86 120 aa10.3□□□□□ -0.76
NUP88-204ENST00000572290 A8MWP4 228 aa10.27□□□□□ -0.77
NUP88-204ENST00000572290 NREPQ16612 68 aa10.26□□□□□ -0.77
NUP88-204ENST00000572290 MTURNQ8N3F0 131 aa10.26□□□□□ -0.77
NUP88-204ENST00000572290 CRCT1Q9UGL9 99 aa10.24□□□□□ -0.77
NUP88-204ENST00000572290 IGKV3D-7A0A0C4DH55 119 aa10.23□□□□□ -0.77
NUP88-204ENST00000572290 C8orf17Q9NRJ1 99 aa10.23□□□□□ -0.77
NUP88-204ENST00000572290 ZCCHC13Q8WW36 166 aaKnown RBP10.21□□□□□ -0.77
NUP88-204ENST00000572290 Q8N9P0 234 aaPredicted RBP10.2□□□□□ -0.78
NUP88-204ENST00000572290 SPCS1Q9Y6A9 102 aa10.2□□□□□ -0.78
NUP88-204ENST00000572290 HRES1P13985 223 aa10.18□□□□□ -0.78
NUP88-204ENST00000572290 PRR15Q8IV56 129 aa10.18□□□□□ -0.78
NUP88-204ENST00000572290 FSIP2Q5CZC0 6907 aa10.18□□□□□ -0.78
NUP88-204ENST00000572290 FAM236DA0A1B0GTK5 79 aa10.17□□□□□ -0.78
NUP88-204ENST00000572290 FAM236CP0DP71 79 aa10.17□□□□□ -0.78
NUP88-204ENST00000572290 RBM12B-AS1Q9P1G2 102 aa10.17□□□□□ -0.78
NUP88-204ENST00000572290 COL5A1-AS1Q5SY13 56 aa10.15□□□□□ -0.78
NUP88-204ENST00000572290 MPLKIPQ8TAP9 179 aa10.15□□□□□ -0.78
NUP88-204ENST00000572290 Q6ZVQ6 151 aa10.14□□□□□ -0.79
NUP88-204ENST00000572290 SMCPP49901 116 aaPredicted RBP10.1□□□□□ -0.79
NUP88-204ENST00000572290 SPINK7P58062 85 aa10.1□□□□□ -0.79
NUP88-204ENST00000572290 MMP24-AS1A0A0U1RRL7 71 aa10.09□□□□□ -0.79
NUP88-204ENST00000572290 TMEM254Q8TBM7 123 aa10.08□□□□□ -0.8
NUP88-204ENST00000572290 K7EQZ3 153 aa10.07□□□□□ -0.8
NUP88-204ENST00000572290 BPY2O14599 106 aa10.07□□□□□ -0.8
NUP88-204ENST00000572290 MRPL34Q9BQ48 92 aaKnown RBP10.07□□□□□ -0.8
NUP88-204ENST00000572290 hDV103S1A0JD37 113 aa10.04□□□□□ -0.8
NUP88-204ENST00000572290 K7EP34 96 aa10.04□□□□□ -0.8
NUP88-204ENST00000572290 PRO0461Q9UI25 63 aa10.03□□□□□ -0.8
NUP88-204ENST00000572290 KRTAP9-8Q9BYQ0 159 aa9.99□□□□□ -0.81
NUP88-204ENST00000572290 NDUFS5O43920 106 aa9.98□□□□□ -0.81
NUP88-204ENST00000572290 PCP4L1A6NKN8 68 aa9.95□□□□□ -0.82
NUP88-204ENST00000572290 WFDC13Q8IUB5 93 aa9.95□□□□□ -0.82
NUP88-204ENST00000572290 Q8N9L7 120 aa9.95□□□□□ -0.82
NUP88-204ENST00000572290 GTF2H5Q6ZYL4 71 aa9.93□□□□□ -0.82
NUP88-204ENST00000572290 LINC00846Q9NV44 126 aa9.93□□□□□ -0.82
NUP88-204ENST00000572290 UBL5Q9BZL1 73 aa9.92□□□□□ -0.82
NUP88-204ENST00000572290 CASC2Q6XLA1 102 aa9.9□□□□□ -0.82
NUP88-204ENST00000572290 F8W1H4 67 aa9.86□□□□□ -0.83
NUP88-204ENST00000572290 MT2AP02795 61 aa9.86□□□□□ -0.83
NUP88-204ENST00000572290 Q5W150 140 aa9.85□□□□□ -0.83
NUP88-204ENST00000572290 HCG22E2RYF7 251 aa9.84□□□□□ -0.83
NUP88-204ENST00000572290 IGKV2D-30A0A075B6S6 120 aa9.81□□□□□ -0.84
NUP88-204ENST00000572290 IGKV2-30P06310 120 aa9.81□□□□□ -0.84
NUP88-204ENST00000572290 ETDBQ3ZM63 59 aa9.81□□□□□ -0.84
NUP88-204ENST00000572290 C7orf65Q6ZTY9 151 aa9.8□□□□□ -0.84
NUP88-204ENST00000572290 MT1FP04733 61 aa9.78□□□□□ -0.84
NUP88-204ENST00000572290 CXCL6P80162 114 aa9.78□□□□□ -0.84
NUP88-204ENST00000572290 USH2AO75445 5202 aa9.76□□□□□ -0.85
NUP88-204ENST00000572290 KRTAP10-10P60014 251 aa9.75□□□□□ -0.85
NUP88-204ENST00000572290 H1FX-AS1Q4G0G2 97 aa9.73□□□□□ -0.85
NUP88-204ENST00000572290 KRTAP9-3Q9BYQ3 159 aa9.67□□□□□ -0.86
NUP88-204ENST00000572290 SSPOA2VEC9 5147 aa9.66□□□□□ -0.86
NUP88-204ENST00000572290 C4orf26Q17RF5 130 aa9.63□□□□□ -0.87
NUP88-204ENST00000572290 TP53AIP1Q9HCN2 124 aa9.62□□□□□ -0.87
NUP88-204ENST00000572290 LCE2BO14633 110 aa9.61□□□□□ -0.87
NUP88-204ENST00000572290 ACYP1P07311 99 aa9.6□□□□□ -0.87
NUP88-204ENST00000572290 KRTAP9-7A8MTY7 169 aa9.58□□□□□ -0.88
NUP88-204ENST00000572290 FAM240AA0A1B0GVK7 77 aa9.54□□□□□ -0.88
NUP88-204ENST00000572290 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.52□□□□□ -0.89
NUP88-204ENST00000572290 ATP5EP2Q5VTU8 51 aa9.49□□□□□ -0.89
NUP88-204ENST00000572290 KRTAP3-1Q9BYR8 98 aa9.48□□□□□ -0.89
NUP88-204ENST00000572290 C1orf64Q8NEQ6 169 aa9.47□□□□□ -0.89
NUP88-204ENST00000572290 HIST1H4AP62805 103 aaKnown RBP9.44□□□□□ -0.9
NUP88-204ENST00000572290 KRTAP19-1Q8IUB9 90 aa9.42□□□□□ -0.9
NUP88-204ENST00000572290 TRAV22A0A0B4J277 110 aa9.41□□□□□ -0.9
NUP88-204ENST00000572290 C5orf47Q569G3 176 aa9.41□□□□□ -0.9
NUP88-204ENST00000572290 S4R3F8 94 aa9.41□□□□□ -0.9
NUP88-204ENST00000572290 CYP4F30PQ9H0H9 118 aa9.4□□□□□ -0.9
NUP88-204ENST00000572290 A0A1B0GV90 55 aa9.39□□□□□ -0.91
NUP88-204ENST00000572290 FCGBPQ9Y6R7 5405 aaPredicted RBP9.38□□□□□ -0.91
NUP88-204ENST00000572290 LOC101927531A0A1B0GV80 90 aa9.37□□□□□ -0.91
NUP88-204ENST00000572290 LINC00643Q86TS7 51 aa9.37□□□□□ -0.91
NUP88-204ENST00000572290 LCA10Q71F78 164 aa9.34□□□□□ -0.91
NUP88-204ENST00000572290 UQCRQO14949 82 aa9.33□□□□□ -0.92
NUP88-204ENST00000572290 CSAG1Q6PB30 78 aa9.33□□□□□ -0.92
NUP88-204ENST00000572290 A0A087WVE0 104 aa9.31□□□□□ -0.92
NUP88-204ENST00000572290 H0Y9P7 68 aa9.28□□□□□ -0.92
NUP88-204ENST00000572290 ATOX1O00244 68 aa9.28□□□□□ -0.92
NUP88-204ENST00000572290 FAM236AA0A1B0GUQ0 79 aa9.27□□□□□ -0.93
NUP88-204ENST00000572290 FAM236BA0A1B0GV22 79 aa9.27□□□□□ -0.93
NUP88-204ENST00000572290 KRTAP19-6Q3LI70 58 aa9.27□□□□□ -0.93
NUP88-204ENST00000572290 KRTAP3-3Q9BYR6 98 aa9.21□□□□□ -0.94
NUP88-204ENST00000572290 J3QR89 54 aa9.19□□□□□ -0.94
NUP88-204ENST00000572290 LINC00208Q96KT6 92 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms