RNA–Protein interactions for RNA: ENST00000569117.1

CDH3-210, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 576 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-210ENST00000569117 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.93□□□□□ -1.46
CDH3-210ENST00000569117 KRTAP9-2Q9BYQ4 174 aa5.92□□□□□ -1.46
CDH3-210ENST00000569117 RETNLBQ9BQ08 111 aa5.9□□□□□ -1.46
CDH3-210ENST00000569117 LCE4AQ5TA78 99 aa5.89□□□□□ -1.47
CDH3-210ENST00000569117 C1orf195Q5TG92 126 aa5.89□□□□□ -1.47
CDH3-210ENST00000569117 FP248Q71RG6 208 aaPredicted RBP5.88□□□□□ -1.47
CDH3-210ENST00000569117 Q96NJ1 140 aa5.88□□□□□ -1.47
CDH3-210ENST00000569117 FAM240AA0A1B0GVK7 77 aa5.86□□□□□ -1.47
CDH3-210ENST00000569117 HERC1Q15751 4861 aa5.86□□□□□ -1.47
CDH3-210ENST00000569117 KRTAP4-12Q9BQ66 201 aa5.85□□□□□ -1.47
CDH3-210ENST00000569117 LINC00472Q9H8W2 130 aa5.85□□□□□ -1.47
CDH3-210ENST00000569117 LINC00846Q9NV44 126 aa5.85□□□□□ -1.47
CDH3-210ENST00000569117 ACYP1P07311 99 aa5.84□□□□□ -1.47
CDH3-210ENST00000569117 PRR4Q16378 134 aa5.83□□□□□ -1.48
CDH3-210ENST00000569117 NREPQ16612 68 aa5.83□□□□□ -1.48
CDH3-210ENST00000569117 KRTAP9-4Q9BYQ2 154 aa5.83□□□□□ -1.48
CDH3-210ENST00000569117 IGLV7-46A0A075B6I9 117 aa5.82□□□□□ -1.48
CDH3-210ENST00000569117 J3KT08 172 aa5.82□□□□□ -1.48
CDH3-210ENST00000569117 J3QR89 54 aa5.82□□□□□ -1.48
CDH3-210ENST00000569117 PRAC1Q96KF2 57 aa5.82□□□□□ -1.48
CDH3-210ENST00000569117 SIGMAR1Q99720 223 aa5.82□□□□□ -1.48
CDH3-210ENST00000569117 UBL5Q9BZL1 73 aa5.82□□□□□ -1.48
CDH3-210ENST00000569117 IGKV4-1P06312 121 aa5.81□□□□□ -1.48
CDH3-210ENST00000569117 TPRXLQ17RH7 258 aa5.8□□□□□ -1.48
CDH3-210ENST00000569117 DEFB116Q30KQ4 102 aa5.8□□□□□ -1.48
CDH3-210ENST00000569117 KRTAP13-3Q3SY46 172 aa5.78□□□□□ -1.48
CDH3-210ENST00000569117 HMCN2Q8NDA2 5059 aa5.77□□□□□ -1.49
CDH3-210ENST00000569117 K7ERU9 68 aa5.77□□□□□ -1.49
CDH3-210ENST00000569117 BPY2O14599 106 aa5.77□□□□□ -1.49
CDH3-210ENST00000569117 IGKV2-30P06310 120 aa5.77□□□□□ -1.49
CDH3-210ENST00000569117 A8MWP4 228 aa5.76□□□□□ -1.49
CDH3-210ENST00000569117 KRTAP9-9Q9BYP9 154 aa5.76□□□□□ -1.49
CDH3-210ENST00000569117 A0A1B0GVX0 72 aa5.75□□□□□ -1.49
CDH3-210ENST00000569117 DSCR10P59022 87 aa5.75□□□□□ -1.49
CDH3-210ENST00000569117 IGKV3D-7A0A0C4DH55 119 aa5.74□□□□□ -1.49
CDH3-210ENST00000569117 NDUFB1O75438 58 aa5.74□□□□□ -1.49
CDH3-210ENST00000569117 SEC61GP60059 68 aa5.74□□□□□ -1.49
CDH3-210ENST00000569117 CXCL6P80162 114 aa5.74□□□□□ -1.49
CDH3-210ENST00000569117 LCE3BQ5TA77 95 aa5.74□□□□□ -1.49
CDH3-210ENST00000569117 ATP5EP2Q5VTU8 51 aa5.74□□□□□ -1.49
CDH3-210ENST00000569117 IGHV6-1A0A0B4J1U7 121 aa5.72□□□□□ -1.49
CDH3-210ENST00000569117 C9orf92A6NGG3 77 aa5.72□□□□□ -1.49
CDH3-210ENST00000569117 C8orf87E5RJ46 101 aa5.72□□□□□ -1.49
CDH3-210ENST00000569117 K7EQZ3 153 aa5.72□□□□□ -1.49
CDH3-210ENST00000569117 LINC00643Q86TS7 51 aa5.72□□□□□ -1.49
CDH3-210ENST00000569117 PRR15Q8IV56 129 aa5.72□□□□□ -1.49
CDH3-210ENST00000569117 LPAP08519 4548 aa5.71□□□□□ -1.5
CDH3-210ENST00000569117 Q8N9L7 120 aa5.7□□□□□ -1.5
CDH3-210ENST00000569117 LINC00313P59037 77 aa5.69□□□□□ -1.5
CDH3-210ENST00000569117 NOTCH2NLQ7Z3S9 236 aa5.69□□□□□ -1.5
CDH3-210ENST00000569117 MMP24-AS1A0A0U1RRL7 71 aa5.68□□□□□ -1.5
CDH3-210ENST00000569117 KRTAP16-1A8MUX0 517 aa5.68□□□□□ -1.5
CDH3-210ENST00000569117 C8orf17Q9NRJ1 99 aa5.68□□□□□ -1.5
CDH3-210ENST00000569117 LRP2P98164 4655 aa5.67□□□□□ -1.5
CDH3-210ENST00000569117 KRTAP9-3Q9BYQ3 159 aa5.66□□□□□ -1.5
CDH3-210ENST00000569117 C20orf166-AS1Q96NR2 134 aa5.65□□□□□ -1.5
CDH3-210ENST00000569117 hDV103S1A0JD37 113 aa5.63□□□□□ -1.51
CDH3-210ENST00000569117 A8MUU9 505 aa5.63□□□□□ -1.51
CDH3-210ENST00000569117 RPL37P61927 97 aaKnown RBP5.63□□□□□ -1.51
CDH3-210ENST00000569117 TMEM254Q8TBM7 123 aa5.63□□□□□ -1.51
CDH3-210ENST00000569117 HCG22E2RYF7 251 aa5.62□□□□□ -1.51
CDH3-210ENST00000569117 CASC2Q6XLA1 102 aa5.62□□□□□ -1.51
CDH3-210ENST00000569117 KRTAP4-8A0A0G2JLE6 195 aa5.61□□□□□ -1.51
CDH3-210ENST00000569117 HIST1H4AP62805 103 aaKnown RBP5.61□□□□□ -1.51
CDH3-210ENST00000569117 Q8N9P0 234 aaPredicted RBP5.61□□□□□ -1.51
CDH3-210ENST00000569117 MRPL34Q9BQ48 92 aaKnown RBP5.61□□□□□ -1.51
CDH3-210ENST00000569117 WFDC13Q8IUB5 93 aa5.6□□□□□ -1.51
CDH3-210ENST00000569117 A0A087WVE0 104 aa5.58□□□□□ -1.52
CDH3-210ENST00000569117 MT-ATP8P03928 68 aa5.58□□□□□ -1.52
CDH3-210ENST00000569117 IMUPQ9GZP8 106 aa5.58□□□□□ -1.52
CDH3-210ENST00000569117 MUC17Q685J3 4493 aa5.56□□□□□ -1.52
CDH3-210ENST00000569117 UBR4Q5T4S7 5183 aa5.55□□□□□ -1.52
CDH3-210ENST00000569117 IGKV2D-30A0A075B6S6 120 aa5.54□□□□□ -1.52
CDH3-210ENST00000569117 ATP11AUNQ6ZP68 121 aa5.54□□□□□ -1.52
CDH3-210ENST00000569117 NDUFS5O43920 106 aa5.53□□□□□ -1.52
CDH3-210ENST00000569117 PCOTHQ58A44 107 aa5.53□□□□□ -1.52
CDH3-210ENST00000569117 OCR1Q9BZK8 76 aa5.53□□□□□ -1.52
CDH3-210ENST00000569117 ZCCHC13Q8WW36 166 aaKnown RBP5.52□□□□□ -1.53
CDH3-210ENST00000569117 LCE5AQ5TCM9 118 aa5.5□□□□□ -1.53
CDH3-210ENST00000569117 TP53AIP1Q9HCN2 124 aa5.5□□□□□ -1.53
CDH3-210ENST00000569117 FAM236AA0A1B0GUQ0 79 aa5.47□□□□□ -1.53
CDH3-210ENST00000569117 FAM236BA0A1B0GV22 79 aa5.47□□□□□ -1.53
CDH3-210ENST00000569117 Q5W150 140 aa5.46□□□□□ -1.54
CDH3-210ENST00000569117 KRTAP4-1Q9BYQ7 146 aa5.46□□□□□ -1.54
CDH3-210ENST00000569117 UQCRQO14949 82 aa5.44□□□□□ -1.54
CDH3-210ENST00000569117 TRAV22A0A0B4J277 110 aa5.43□□□□□ -1.54
CDH3-210ENST00000569117 SCGB1A1P11684 91 aa5.43□□□□□ -1.54
CDH3-210ENST00000569117 KRTAP4-7Q9BYR0 210 aa5.43□□□□□ -1.54
CDH3-210ENST00000569117 RNF213Q63HN8 5207 aa5.42□□□□□ -1.54
CDH3-210ENST00000569117 MUC2Q02817 5179 aa5.41□□□□□ -1.54
CDH3-210ENST00000569117 ATOX1O00244 68 aa5.4□□□□□ -1.54
CDH3-210ENST00000569117 SMIM20Q8N5G0 67 aa5.4□□□□□ -1.54
CDH3-210ENST00000569117 SPINK7P58062 85 aa5.39□□□□□ -1.55
CDH3-210ENST00000569117 C7orf65Q6ZTY9 151 aa5.39□□□□□ -1.55
CDH3-210ENST00000569117 H0Y9P7 68 aa5.38□□□□□ -1.55
CDH3-210ENST00000569117 TRAV7A0A075B6U4 112 aa5.37□□□□□ -1.55
CDH3-210ENST00000569117 HRES1P13985 223 aa5.36□□□□□ -1.55
CDH3-210ENST00000569117 LCE1DQ5T752 114 aa5.36□□□□□ -1.55
CDH3-210ENST00000569117 LOC101927531A0A1B0GV80 90 aa5.35□□□□□ -1.55
CDH3-210ENST00000569117 C5orf47Q569G3 176 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms