RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, human

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-223	ENST00000568488	MT1B	P07438	61 aa		7.39	□□□□□ -1.23
CLK3-223	ENST00000568488	H1FX-AS1	Q4G0G2	97 aa		7.37	□□□□□ -1.23
CLK3-223	ENST00000568488		Q5VV11	94 aa		7.37	□□□□□ -1.23
CLK3-223	ENST00000568488	TRBV7-4	A0A0J9YYF1	115 aa		7.36	□□□□□ -1.23
CLK3-223	ENST00000568488	DLEU1	O43261	78 aa		7.36	□□□□□ -1.23
CLK3-223	ENST00000568488	KRTAP10-5	P60370	271 aa		7.36	□□□□□ -1.23
CLK3-223	ENST00000568488	LYRM7	Q5U5X0	104 aa		7.36	□□□□□ -1.23
CLK3-223	ENST00000568488		A0A1B0GVX0	72 aa		7.35	□□□□□ -1.23
CLK3-223	ENST00000568488	ANKRD29	Q8N6D5	301 aa		7.35	□□□□□ -1.23
CLK3-223	ENST00000568488	RAB37	Q96AX2	223 aa		7.35	□□□□□ -1.23
CLK3-223	ENST00000568488	C2orf91	Q6ZV80	131 aa		7.34	□□□□□ -1.23
CLK3-223	ENST00000568488		A0A1B0GV72	72 aa		7.33	□□□□□ -1.24
CLK3-223	ENST00000568488		H0YGX0	51 aa		7.31	□□□□□ -1.24
CLK3-223	ENST00000568488	HIGD1B	Q9P298	99 aa		7.3	□□□□□ -1.24
CLK3-223	ENST00000568488	UQCR10	Q9UDW1	63 aa		7.3	□□□□□ -1.24
CLK3-223	ENST00000568488	FAM236A	A0A1B0GUQ0	79 aa		7.29	□□□□□ -1.24
CLK3-223	ENST00000568488	FAM236B	A0A1B0GV22	79 aa		7.29	□□□□□ -1.24
CLK3-223	ENST00000568488	SPRR2E	P22531	72 aa		7.29	□□□□□ -1.24
CLK3-223	ENST00000568488	SPRR2B	P35325	72 aa		7.29	□□□□□ -1.24
CLK3-223	ENST00000568488	SPRR2A	P35326	72 aa		7.29	□□□□□ -1.24
CLK3-223	ENST00000568488	KRTAP2-2	Q9BYT5	123 aa		7.29	□□□□□ -1.24
CLK3-223	ENST00000568488	KRTAP2-1	Q9BYU5	128 aa		7.29	□□□□□ -1.24
CLK3-223	ENST00000568488	TRAC	P01848	142 aa		7.28	□□□□□ -1.24
CLK3-223	ENST00000568488	CCK	P06307	115 aa		7.26	□□□□□ -1.25
CLK3-223	ENST00000568488	HIST1H4G	Q99525	98 aa		7.26	□□□□□ -1.25
CLK3-223	ENST00000568488	KRTAP19-8	Q3LI54	63 aa		7.25	□□□□□ -1.25
CLK3-223	ENST00000568488	TSTD3	H0UI37	97 aa		7.24	□□□□□ -1.25
CLK3-223	ENST00000568488	SPRR2F	Q96RM1	72 aa		7.24	□□□□□ -1.25
CLK3-223	ENST00000568488	DSCR8	Q96T75	97 aa		7.23	□□□□□ -1.25
CLK3-223	ENST00000568488	IGKV3D-7	A0A0C4DH55	119 aa		7.22	□□□□□ -1.25
CLK3-223	ENST00000568488	HSD52	Q0P140	79 aa		7.21	□□□□□ -1.26
CLK3-223	ENST00000568488	CEND1	Q8N111	149 aa		7.21	□□□□□ -1.26
CLK3-223	ENST00000568488		A0A1B0GX51	115 aa		7.2	□□□□□ -1.26
CLK3-223	ENST00000568488	FXYD2	P54710	66 aa		7.2	□□□□□ -1.26
CLK3-223	ENST00000568488	VPS25	Q9BRG1	176 aa		7.2	□□□□□ -1.26
CLK3-223	ENST00000568488	IMUP	Q9GZP8	106 aa		7.2	□□□□□ -1.26
CLK3-223	ENST00000568488	SPRR2G	Q9BYE4	73 aa		7.18	□□□□□ -1.26
CLK3-223	ENST00000568488	NDUFB1	O75438	58 aa		7.17	□□□□□ -1.26
CLK3-223	ENST00000568488		J3KT08	172 aa		7.16	□□□□□ -1.26
CLK3-223	ENST00000568488	PCP4L1	A6NKN8	68 aa		7.15	□□□□□ -1.26
CLK3-223	ENST00000568488	C5orf47	Q569G3	176 aa		7.15	□□□□□ -1.26
CLK3-223	ENST00000568488	C8orf17	Q9NRJ1	99 aa		7.14	□□□□□ -1.27
CLK3-223	ENST00000568488	ORMDL1	Q9P0S3	153 aa		7.14	□□□□□ -1.27
CLK3-223	ENST00000568488		A0A0B4J2C4	111 aa		7.12	□□□□□ -1.27
CLK3-223	ENST00000568488		K7ERJ3	54 aa		7.12	□□□□□ -1.27
CLK3-223	ENST00000568488	DNAL4	O96015	105 aa		7.12	□□□□□ -1.27
CLK3-223	ENST00000568488	TMEM238L	A0A1B0GVL6	79 aa		7.1	□□□□□ -1.27
CLK3-223	ENST00000568488		A6NJY4	79 aa		7.1	□□□□□ -1.27
CLK3-223	ENST00000568488		M0R143	59 aa		7.1	□□□□□ -1.27
CLK3-223	ENST00000568488		H3BQ85	93 aa		7.09	□□□□□ -1.27
CLK3-223	ENST00000568488	TMEM256-PLSCR3	K7ERE1	68 aa		7.09	□□□□□ -1.27
CLK3-223	ENST00000568488		Q6ZVQ6	151 aa		7.09	□□□□□ -1.27
CLK3-223	ENST00000568488	BATF	Q16520	125 aa		7.08	□□□□□ -1.28
CLK3-223	ENST00000568488	PRO1854	Q9UHT4	67 aa		7.08	□□□□□ -1.28
CLK3-223	ENST00000568488	IGKV2D-30	A0A075B6S6	120 aa		7.07	□□□□□ -1.28
CLK3-223	ENST00000568488	IGKV2-30	P06310	120 aa		7.07	□□□□□ -1.28
CLK3-223	ENST00000568488	GPR98	Q8WXG9	6306 aa		7.06	□□□□□ -1.28
CLK3-223	ENST00000568488	TRIAP1	O43715	76 aa		7.05	□□□□□ -1.28
CLK3-223	ENST00000568488	SPRR2D	P22532	72 aa		7.05	□□□□□ -1.28
CLK3-223	ENST00000568488	LCE1A	Q5T7P2	110 aa		7.05	□□□□□ -1.28
CLK3-223	ENST00000568488	TAX1BP3	O14907	124 aa		7.02	□□□□□ -1.29
CLK3-223	ENST00000568488	RBM3	P98179	157 aa	Known RBP	7.01	□□□□□ -1.29
CLK3-223	ENST00000568488	UBE2V1	Q13404	147 aa		7.01	□□□□□ -1.29
CLK3-223	ENST00000568488	C4orf26	Q17RF5	130 aa		7.01	□□□□□ -1.29
CLK3-223	ENST00000568488	NAA38	Q9BRA0	125 aa	Known RBP	7.01	□□□□□ -1.29
CLK3-223	ENST00000568488	NDUFS5	O43920	106 aa		7	□□□□□ -1.29
CLK3-223	ENST00000568488		Q6ZQT0	140 aa		7	□□□□□ -1.29
CLK3-223	ENST00000568488	C21orf62-AS1	Q17RA5	79 aa		6.99	□□□□□ -1.29
CLK3-223	ENST00000568488	C7orf65	Q6ZTY9	151 aa		6.99	□□□□□ -1.29
CLK3-223	ENST00000568488	KRTAP8-1	Q8IUC2	63 aa		6.99	□□□□□ -1.29
CLK3-223	ENST00000568488	MRPL34	Q9BQ48	92 aa	Known RBP	6.99	□□□□□ -1.29
CLK3-223	ENST00000568488	KLKP1	Q107X0	134 aa		6.98	□□□□□ -1.29
CLK3-223	ENST00000568488	COL5A1-AS1	Q5SY13	56 aa		6.98	□□□□□ -1.29
CLK3-223	ENST00000568488	CSAG1	Q6PB30	78 aa		6.98	□□□□□ -1.29
CLK3-223	ENST00000568488	C9orf118	A6NHY6	69 aa		6.97	□□□□□ -1.29
CLK3-223	ENST00000568488	SMCP	P49901	116 aa	Predicted RBP	6.97	□□□□□ -1.29
CLK3-223	ENST00000568488	PSMB2	P49721	201 aa		6.96	□□□□□ -1.3
CLK3-223	ENST00000568488	TMEM254	Q8TBM7	123 aa		6.96	□□□□□ -1.3
CLK3-223	ENST00000568488		S4R3F8	94 aa		6.95	□□□□□ -1.3
CLK3-223	ENST00000568488		C9JAW5	83 aa		6.94	□□□□□ -1.3
CLK3-223	ENST00000568488	PRR15	Q8IV56	129 aa		6.92	□□□□□ -1.3
CLK3-223	ENST00000568488	MMP24-AS1	A0A0U1RRL7	71 aa		6.91	□□□□□ -1.3
CLK3-223	ENST00000568488		A0A1W2PPM0	123 aa		6.91	□□□□□ -1.3
CLK3-223	ENST00000568488	SCGB1C2	P0DMR2	95 aa		6.91	□□□□□ -1.3
CLK3-223	ENST00000568488	LCE3B	Q5TA77	95 aa		6.91	□□□□□ -1.3
CLK3-223	ENST00000568488		Q5W150	140 aa		6.91	□□□□□ -1.3
CLK3-223	ENST00000568488	COX6C	P09669	75 aa		6.9	□□□□□ -1.3
CLK3-223	ENST00000568488	hDV103S1	A0JD37	113 aa		6.88	□□□□□ -1.31
CLK3-223	ENST00000568488	LCA10	Q71F78	164 aa		6.88	□□□□□ -1.31
CLK3-223	ENST00000568488	KRTAP3-1	Q9BYR8	98 aa		6.85	□□□□□ -1.31
CLK3-223	ENST00000568488	ATXN8	Q156A1	80 aa		6.84	□□□□□ -1.31
CLK3-223	ENST00000568488	PRO2289	Q9P1D8	64 aa		6.84	□□□□□ -1.31
CLK3-223	ENST00000568488	SPCS1	Q9Y6A9	102 aa		6.84	□□□□□ -1.31
CLK3-223	ENST00000568488		K7EP34	96 aa		6.82	□□□□□ -1.32
CLK3-223	ENST00000568488	CRIPT	Q9P021	101 aa		6.82	□□□□□ -1.32
CLK3-223	ENST00000568488		A0A1B0GV90	55 aa		6.8	□□□□□ -1.32
CLK3-223	ENST00000568488		K7EQZ3	153 aa		6.8	□□□□□ -1.32
CLK3-223	ENST00000568488	BAALC-AS2	P0C853	105 aa		6.8	□□□□□ -1.32
CLK3-223	ENST00000568488	NREP	Q16612	68 aa		6.79	□□□□□ -1.32
CLK3-223	ENST00000568488	C1orf64	Q8NEQ6	169 aa		6.78	□□□□□ -1.32

Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms