RNA–Protein interactions for RNA: ENST00000568443.2

CLN3-232, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 969 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-232ENST00000568443 RBM12B-AS1Q9P1G2 102 aa11.31□□□□□ -0.6
CLN3-232ENST00000568443 KRTAP9-8Q9BYQ0 159 aa11.3□□□□□ -0.6
CLN3-232ENST00000568443 J3KT08 172 aa11.29□□□□□ -0.6
CLN3-232ENST00000568443 HRES1P13985 223 aa11.27□□□□□ -0.61
CLN3-232ENST00000568443 Q6ZQT0 140 aa11.26□□□□□ -0.61
CLN3-232ENST00000568443 MPLKIPQ8TAP9 179 aa11.26□□□□□ -0.61
CLN3-232ENST00000568443 M0R143 59 aa11.24□□□□□ -0.61
CLN3-232ENST00000568443 ATXN8Q156A1 80 aa11.24□□□□□ -0.61
CLN3-232ENST00000568443 NDUFB1O75438 58 aa11.22□□□□□ -0.61
CLN3-232ENST00000568443 JMJD7-PLA2G4BH0Y9G9 81 aa11.21□□□□□ -0.61
CLN3-232ENST00000568443 NAA38Q9BRA0 125 aaKnown RBP11.21□□□□□ -0.61
CLN3-232ENST00000568443 ZCCHC13Q8WW36 166 aaKnown RBP11.19□□□□□ -0.62
CLN3-232ENST00000568443 A0A1B0GW54 56 aa11.17□□□□□ -0.62
CLN3-232ENST00000568443 LOC110117498A0A087WWA1 95 aa11.16□□□□□ -0.62
CLN3-232ENST00000568443 PDE6GP18545 87 aa11.15□□□□□ -0.62
CLN3-232ENST00000568443 MTURNQ8N3F0 131 aa11.15□□□□□ -0.62
CLN3-232ENST00000568443 MT2AP02795 61 aa11.13□□□□□ -0.63
CLN3-232ENST00000568443 SPINK7P58062 85 aa11.13□□□□□ -0.63
CLN3-232ENST00000568443 A8MWP4 228 aa11.12□□□□□ -0.63
CLN3-232ENST00000568443 Q8N9P0 234 aaPredicted RBP11.12□□□□□ -0.63
CLN3-232ENST00000568443 C8orf17Q9NRJ1 99 aa11.11□□□□□ -0.63
CLN3-232ENST00000568443 USH2AO75445 5202 aa11.11□□□□□ -0.63
CLN3-232ENST00000568443 LYRM7Q5U5X0 104 aa11.1□□□□□ -0.63
CLN3-232ENST00000568443 C14orf132Q9NPU4 83 aa11.1□□□□□ -0.63
CLN3-232ENST00000568443 IGKV3D-7A0A0C4DH55 119 aa11.07□□□□□ -0.64
CLN3-232ENST00000568443 SMIM6P0DI80 62 aa11.05□□□□□ -0.64
CLN3-232ENST00000568443 SSPOA2VEC9 5147 aa11.04□□□□□ -0.64
CLN3-232ENST00000568443 NREPQ16612 68 aa11.04□□□□□ -0.64
CLN3-232ENST00000568443 MT1FP04733 61 aa11.03□□□□□ -0.64
CLN3-232ENST00000568443 KRTAP10-10P60014 251 aa11.03□□□□□ -0.64
CLN3-232ENST00000568443 Q6ZVQ6 151 aa11.02□□□□□ -0.65
CLN3-232ENST00000568443 PRR15Q8IV56 129 aa11.01□□□□□ -0.65
CLN3-232ENST00000568443 BATFQ16520 125 aa11□□□□□ -0.65
CLN3-232ENST00000568443 TSTD3H0UI37 97 aa10.98□□□□□ -0.65
CLN3-232ENST00000568443 WFDC13Q8IUB5 93 aa10.97□□□□□ -0.65
CLN3-232ENST00000568443 KRTAP9-3Q9BYQ3 159 aa10.95□□□□□ -0.66
CLN3-232ENST00000568443 LCE2BO14633 110 aa10.92□□□□□ -0.66
CLN3-232ENST00000568443 TMEM254Q8TBM7 123 aa10.92□□□□□ -0.66
CLN3-232ENST00000568443 MRPL34Q9BQ48 92 aaKnown RBP10.92□□□□□ -0.66
CLN3-232ENST00000568443 MMP24-AS1A0A0U1RRL7 71 aa10.91□□□□□ -0.66
CLN3-232ENST00000568443 C9orf118A6NHY6 69 aa10.89□□□□□ -0.67
CLN3-232ENST00000568443 H3BT86 120 aa10.89□□□□□ -0.67
CLN3-232ENST00000568443 hDV103S1A0JD37 113 aa10.87□□□□□ -0.67
CLN3-232ENST00000568443 KRTAP9-1A8MXZ3 250 aaPredicted RBP10.86□□□□□ -0.67
CLN3-232ENST00000568443 K7EQZ3 153 aa10.86□□□□□ -0.67
CLN3-232ENST00000568443 NDUFS5O43920 106 aa10.86□□□□□ -0.67
CLN3-232ENST00000568443 A0A1W2PPM0 123 aa10.84□□□□□ -0.67
CLN3-232ENST00000568443 TAX1BP3O14907 124 aa10.82□□□□□ -0.68
CLN3-232ENST00000568443 BPY2O14599 106 aa10.81□□□□□ -0.68
CLN3-232ENST00000568443 FCGBPQ9Y6R7 5405 aaPredicted RBP10.8□□□□□ -0.68
CLN3-232ENST00000568443 KRTAP19-1Q8IUB9 90 aa10.8□□□□□ -0.68
CLN3-232ENST00000568443 KRTAP9-7A8MTY7 169 aa10.78□□□□□ -0.68
CLN3-232ENST00000568443 H1FX-AS1Q4G0G2 97 aa10.75□□□□□ -0.69
CLN3-232ENST00000568443 IGKV2D-30A0A075B6S6 120 aa10.73□□□□□ -0.69
CLN3-232ENST00000568443 IGKV2-30P06310 120 aa10.73□□□□□ -0.69
CLN3-232ENST00000568443 LOC105371267A0A1B0GV96 52 aa10.7□□□□□ -0.7
CLN3-232ENST00000568443 Q5W150 140 aa10.7□□□□□ -0.7
CLN3-232ENST00000568443 Q8N9L7 120 aa10.69□□□□□ -0.7
CLN3-232ENST00000568443 SPCS1Q9Y6A9 102 aa10.69□□□□□ -0.7
CLN3-232ENST00000568443 CASC2Q6XLA1 102 aa10.68□□□□□ -0.7
CLN3-232ENST00000568443 C7orf65Q6ZTY9 151 aa10.68□□□□□ -0.7
CLN3-232ENST00000568443 HCG22E2RYF7 251 aa10.64□□□□□ -0.71
CLN3-232ENST00000568443 LINC00846Q9NV44 126 aa10.64□□□□□ -0.71
CLN3-232ENST00000568443 SMCPP49901 116 aaPredicted RBP10.61□□□□□ -0.71
CLN3-232ENST00000568443 CXCL6P80162 114 aa10.58□□□□□ -0.72
CLN3-232ENST00000568443 KRTAP19-6Q3LI70 58 aa10.56□□□□□ -0.72
CLN3-232ENST00000568443 UBL5Q9BZL1 73 aa10.56□□□□□ -0.72
CLN3-232ENST00000568443 C4orf26Q17RF5 130 aa10.55□□□□□ -0.72
CLN3-232ENST00000568443 COL5A1-AS1Q5SY13 56 aa10.53□□□□□ -0.72
CLN3-232ENST00000568443 PRO0461Q9UI25 63 aa10.5□□□□□ -0.73
CLN3-232ENST00000568443 K7EP34 96 aa10.46□□□□□ -0.73
CLN3-232ENST00000568443 MACF1Q9UPN3 7388 aaKnown RBP10.44□□□□□ -0.74
CLN3-232ENST00000568443 C5orf47Q569G3 176 aa10.39□□□□□ -0.75
CLN3-232ENST00000568443 KRTAP3-1Q9BYR8 98 aa10.36□□□□□ -0.75
CLN3-232ENST00000568443 C1orf64Q8NEQ6 169 aa10.35□□□□□ -0.75
CLN3-232ENST00000568443 TP53AIP1Q9HCN2 124 aa10.35□□□□□ -0.75
CLN3-232ENST00000568443 SYNE2Q8WXH0 6885 aaKnown RBP10.34□□□□□ -0.75
CLN3-232ENST00000568443 GTF2H5Q6ZYL4 71 aa10.34□□□□□ -0.75
CLN3-232ENST00000568443 S4R3F8 94 aa10.33□□□□□ -0.76
CLN3-232ENST00000568443 FAM236AA0A1B0GUQ0 79 aa10.32□□□□□ -0.76
CLN3-232ENST00000568443 FAM236BA0A1B0GV22 79 aa10.32□□□□□ -0.76
CLN3-232ENST00000568443 CSAG1Q6PB30 78 aa10.3□□□□□ -0.76
CLN3-232ENST00000568443 F8W1H4 67 aa10.29□□□□□ -0.76
CLN3-232ENST00000568443 ETDBQ3ZM63 59 aa10.26□□□□□ -0.77
CLN3-232ENST00000568443 LCA10Q71F78 164 aa10.25□□□□□ -0.77
CLN3-232ENST00000568443 CYP4F30PQ9H0H9 118 aa10.16□□□□□ -0.78
CLN3-232ENST00000568443 PCP4L1A6NKN8 68 aa10.15□□□□□ -0.78
CLN3-232ENST00000568443 KRTAP6-3Q3LI67 103 aa10.13□□□□□ -0.79
CLN3-232ENST00000568443 Q5VV11 94 aa10.12□□□□□ -0.79
CLN3-232ENST00000568443 SPRR2GQ9BYE4 73 aa10.11□□□□□ -0.79
CLN3-232ENST00000568443 TRAV22A0A0B4J277 110 aa10.09□□□□□ -0.79
CLN3-232ENST00000568443 MT1BP07438 61 aa10.09□□□□□ -0.79
CLN3-232ENST00000568443 LOC101927531A0A1B0GV80 90 aa10.07□□□□□ -0.8
CLN3-232ENST00000568443 A6NN06 94 aa10.07□□□□□ -0.8
CLN3-232ENST00000568443 ACYP1P07311 99 aa10.07□□□□□ -0.8
CLN3-232ENST00000568443 KRTAP3-3Q9BYR6 98 aa10.07□□□□□ -0.8
CLN3-232ENST00000568443 KLKP1Q107X0 134 aa10.06□□□□□ -0.8
CLN3-232ENST00000568443 KRTAP19-8Q3LI54 63 aa10.06□□□□□ -0.8
CLN3-232ENST00000568443 A0A087WVE0 104 aa9.99□□□□□ -0.81
CLN3-232ENST00000568443 HIST1H4AP62805 103 aaKnown RBP9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms