RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 KRTAP16-1A8MUX0 517 aa10.39□□□□□ -0.75
CLN3-225ENST00000566824 FAT4Q6V0I7 4981 aa10.39□□□□□ -0.75
CLN3-225ENST00000566824 LINC00313P59037 77 aa10.38□□□□□ -0.75
CLN3-225ENST00000566824 Q75L30 129 aa10.38□□□□□ -0.75
CLN3-225ENST00000566824 A0A1B0GVX0 72 aa10.37□□□□□ -0.75
CLN3-225ENST00000566824 A8MUU9 505 aa10.36□□□□□ -0.75
CLN3-225ENST00000566824 J3KT08 172 aa10.36□□□□□ -0.75
CLN3-225ENST00000566824 NREPQ16612 68 aa10.36□□□□□ -0.75
CLN3-225ENST00000566824 C20orf166-AS1Q96NR2 134 aa10.36□□□□□ -0.75
CLN3-225ENST00000566824 F8W1H4 67 aa10.34□□□□□ -0.75
CLN3-225ENST00000566824 ETDBQ3ZM63 59 aa10.33□□□□□ -0.76
CLN3-225ENST00000566824 IGKV3D-7A0A0C4DH55 119 aa10.32□□□□□ -0.76
CLN3-225ENST00000566824 A8MWP4 228 aa10.3□□□□□ -0.76
CLN3-225ENST00000566824 A0A1B0GV90 55 aa10.28□□□□□ -0.76
CLN3-225ENST00000566824 C8orf87E5RJ46 101 aa10.28□□□□□ -0.76
CLN3-225ENST00000566824 ATP11AUNQ6ZP68 121 aa10.28□□□□□ -0.76
CLN3-225ENST00000566824 Q6ZVQ6 151 aa10.28□□□□□ -0.76
CLN3-225ENST00000566824 LINC00846Q9NV44 126 aa10.27□□□□□ -0.77
CLN3-225ENST00000566824 NDUFB1O75438 58 aa10.25□□□□□ -0.77
CLN3-225ENST00000566824 C8orf17Q9NRJ1 99 aa10.25□□□□□ -0.77
CLN3-225ENST00000566824 KRTAP19-2Q3LHN2 52 aa10.24□□□□□ -0.77
CLN3-225ENST00000566824 PRR15Q8IV56 129 aa10.24□□□□□ -0.77
CLN3-225ENST00000566824 A0A0U1RQV1 116 aa10.23□□□□□ -0.77
CLN3-225ENST00000566824 K7EQZ3 153 aa10.22□□□□□ -0.77
CLN3-225ENST00000566824 BPY2O14599 106 aa10.21□□□□□ -0.78
CLN3-225ENST00000566824 LCE2CQ5TA81 110 aa10.2□□□□□ -0.78
CLN3-225ENST00000566824 MMP24-AS1A0A0U1RRL7 71 aa10.18□□□□□ -0.78
CLN3-225ENST00000566824 Q8N9L7 120 aa10.18□□□□□ -0.78
CLN3-225ENST00000566824 LCE2AQ5TA79 106 aaPredicted RBP10.17□□□□□ -0.78
CLN3-225ENST00000566824 Q8N9P0 234 aaPredicted RBP10.14□□□□□ -0.79
CLN3-225ENST00000566824 UBL5Q9BZL1 73 aa10.14□□□□□ -0.79
CLN3-225ENST00000566824 TMEM254Q8TBM7 123 aa10.07□□□□□ -0.8
CLN3-225ENST00000566824 ZCCHC13Q8WW36 166 aaKnown RBP10.07□□□□□ -0.8
CLN3-225ENST00000566824 hDV103S1A0JD37 113 aa10.07□□□□□ -0.8
CLN3-225ENST00000566824 MRPL34Q9BQ48 92 aaKnown RBP10.07□□□□□ -0.8
CLN3-225ENST00000566824 WFDC13Q8IUB5 93 aa10.05□□□□□ -0.8
CLN3-225ENST00000566824 MT1HP80294 61 aa10□□□□□ -0.81
CLN3-225ENST00000566824 CASC2Q6XLA1 102 aa9.99□□□□□ -0.81
CLN3-225ENST00000566824 FAM240AA0A1B0GVK7 77 aa9.97□□□□□ -0.81
CLN3-225ENST00000566824 NDUFS5O43920 106 aa9.97□□□□□ -0.81
CLN3-225ENST00000566824 ACYP1P07311 99 aa9.97□□□□□ -0.81
CLN3-225ENST00000566824 HRES1P13985 223 aa9.96□□□□□ -0.82
CLN3-225ENST00000566824 CXCL6P80162 114 aa9.96□□□□□ -0.82
CLN3-225ENST00000566824 COX6B2Q6YFQ2 88 aa9.96□□□□□ -0.82
CLN3-225ENST00000566824 FLGP20930 4061 aaPredicted RBP9.95□□□□□ -0.82
CLN3-225ENST00000566824 HCG22E2RYF7 251 aa9.93□□□□□ -0.82
CLN3-225ENST00000566824 SPINK7P58062 85 aa9.92□□□□□ -0.82
CLN3-225ENST00000566824 Q5W150 140 aa9.92□□□□□ -0.82
CLN3-225ENST00000566824 MPLKIPQ8TAP9 179 aa9.91□□□□□ -0.82
CLN3-225ENST00000566824 ATP5EP2Q5VTU8 51 aa9.81□□□□□ -0.84
CLN3-225ENST00000566824 LINC00643Q86TS7 51 aa9.79□□□□□ -0.84
CLN3-225ENST00000566824 FAM236DA0A1B0GTK5 79 aa9.78□□□□□ -0.84
CLN3-225ENST00000566824 FAM236CP0DP71 79 aa9.78□□□□□ -0.84
CLN3-225ENST00000566824 RBM12B-AS1Q9P1G2 102 aa9.78□□□□□ -0.84
CLN3-225ENST00000566824 M0R2T5 61 aa9.77□□□□□ -0.85
CLN3-225ENST00000566824 IGKV2D-30A0A075B6S6 120 aa9.76□□□□□ -0.85
CLN3-225ENST00000566824 IGKV2-30P06310 120 aa9.76□□□□□ -0.85
CLN3-225ENST00000566824 HIST1H4AP62805 103 aaKnown RBP9.76□□□□□ -0.85
CLN3-225ENST00000566824 A0A087WVE0 104 aa9.74□□□□□ -0.85
CLN3-225ENST00000566824 KRTAP10-6P60371 365 aaPredicted RBP9.74□□□□□ -0.85
CLN3-225ENST00000566824 LORP23490 312 aaPredicted RBP9.72□□□□□ -0.85
CLN3-225ENST00000566824 J3QR89 54 aa9.71□□□□□ -0.86
CLN3-225ENST00000566824 C7orf65Q6ZTY9 151 aa9.69□□□□□ -0.86
CLN3-225ENST00000566824 TP53AIP1Q9HCN2 124 aa9.68□□□□□ -0.86
CLN3-225ENST00000566824 KRTAP9-2Q9BYQ4 174 aa9.58□□□□□ -0.88
CLN3-225ENST00000566824 C4orf26Q17RF5 130 aa9.57□□□□□ -0.88
CLN3-225ENST00000566824 TRAV22A0A0B4J277 110 aa9.55□□□□□ -0.88
CLN3-225ENST00000566824 K7ERU9 68 aa9.55□□□□□ -0.88
CLN3-225ENST00000566824 KRTAP9-8Q9BYQ0 159 aa9.53□□□□□ -0.88
CLN3-225ENST00000566824 UQCRQO14949 82 aa9.52□□□□□ -0.89
CLN3-225ENST00000566824 H1FX-AS1Q4G0G2 97 aa9.52□□□□□ -0.89
CLN3-225ENST00000566824 MT-ATP8P03928 68 aa9.51□□□□□ -0.89
CLN3-225ENST00000566824 KRTAP3-1Q9BYR8 98 aa9.51□□□□□ -0.89
CLN3-225ENST00000566824 CYP4F30PQ9H0H9 118 aa9.5□□□□□ -0.89
CLN3-225ENST00000566824 H0Y9P7 68 aa9.48□□□□□ -0.89
CLN3-225ENST00000566824 LCE2DQ5TA82 110 aaPredicted RBP9.48□□□□□ -0.89
CLN3-225ENST00000566824 OCR1Q9BZK8 76 aa9.48□□□□□ -0.89
CLN3-225ENST00000566824 LOC101927531A0A1B0GV80 90 aa9.44□□□□□ -0.9
CLN3-225ENST00000566824 MT2AP02795 61 aa9.44□□□□□ -0.9
CLN3-225ENST00000566824 C1orf64Q8NEQ6 169 aa9.41□□□□□ -0.9
CLN3-225ENST00000566824 ATOX1O00244 68 aa9.38□□□□□ -0.91
CLN3-225ENST00000566824 IMUPQ9GZP8 106 aa9.38□□□□□ -0.91
CLN3-225ENST00000566824 MT1FP04733 61 aa9.37□□□□□ -0.91
CLN3-225ENST00000566824 LINC00208Q96KT6 92 aa9.36□□□□□ -0.91
CLN3-225ENST00000566824 SCGB1A1P11684 91 aa9.33□□□□□ -0.92
CLN3-225ENST00000566824 KLKP1Q107X0 134 aa9.32□□□□□ -0.92
CLN3-225ENST00000566824 MP68P56378 58 aa9.3□□□□□ -0.92
CLN3-225ENST00000566824 C5orf47Q569G3 176 aa9.3□□□□□ -0.92
CLN3-225ENST00000566824 FAM236AA0A1B0GUQ0 79 aa9.29□□□□□ -0.92
CLN3-225ENST00000566824 FAM236BA0A1B0GV22 79 aa9.29□□□□□ -0.92
CLN3-225ENST00000566824 KRTAP10-10P60014 251 aa9.28□□□□□ -0.92
CLN3-225ENST00000566824 S4R3F8 94 aa9.26□□□□□ -0.93
CLN3-225ENST00000566824 LCA10Q71F78 164 aa9.25□□□□□ -0.93
CLN3-225ENST00000566824 KRTAP9-3Q9BYQ3 159 aa9.22□□□□□ -0.93
CLN3-225ENST00000566824 KRTAP3-3Q9BYR6 98 aa9.2□□□□□ -0.94
CLN3-225ENST00000566824 H3BPC8 53 aa9.19□□□□□ -0.94
CLN3-225ENST00000566824 FSIP2Q5CZC0 6907 aa9.18□□□□□ -0.94
CLN3-225ENST00000566824 TRAV7A0A075B6U4 112 aa9.18□□□□□ -0.94
CLN3-225ENST00000566824 USH2AO75445 5202 aa9.18□□□□□ -0.94
CLN3-225ENST00000566824 LCE2BO14633 110 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 98.6 ms