RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 SPINK6Q6UWN8 80 aa3.63□□□□□ -1.83
CLN3-223ENST00000566472 LINC00336Q6ZUF6 198 aa3.63□□□□□ -1.83
CLN3-223ENST00000566472 PRO0628Q9UI54 55 aa3.63□□□□□ -1.83
CLN3-223ENST00000566472 LYSTQ99698 3801 aa3.63□□□□□ -1.83
CLN3-223ENST00000566472 A0A087X002 238 aa3.62□□□□□ -1.83
CLN3-223ENST00000566472 KRTAP1-4P0C5Y4 121 aa3.62□□□□□ -1.83
CLN3-223ENST00000566472 NOTCH2NLQ7Z3S9 236 aa3.62□□□□□ -1.83
CLN3-223ENST00000566472 DNAH2Q9P225 4427 aa3.62□□□□□ -1.83
CLN3-223ENST00000566472 DNAH8Q96JB1 4490 aa3.62□□□□□ -1.83
CLN3-223ENST00000566472 FAM229AH3BQW9 127 aa3.61□□□□□ -1.83
CLN3-223ENST00000566472 LINC00313P59037 77 aa3.61□□□□□ -1.83
CLN3-223ENST00000566472 RPS29P62273 56 aaKnown RBP3.61□□□□□ -1.83
CLN3-223ENST00000566472 COA5Q86WW8 74 aa3.61□□□□□ -1.83
CLN3-223ENST00000566472 Q8N9P0 234 aaPredicted RBP3.61□□□□□ -1.83
CLN3-223ENST00000566472 PCOTHQ58A44 107 aa3.6□□□□□ -1.83
CLN3-223ENST00000566472 HECTD4Q9Y4D8 3996 aa3.6□□□□□ -1.83
CLN3-223ENST00000566472 SPINK1P00995 79 aa3.59□□□□□ -1.83
CLN3-223ENST00000566472 SPAG11AQ6PDA7 123 aa3.58□□□□□ -1.84
CLN3-223ENST00000566472 TYMSOSQ8TAI1 123 aa3.58□□□□□ -1.84
CLN3-223ENST00000566472 KRTAP16-1A8MUX0 517 aa3.57□□□□□ -1.84
CLN3-223ENST00000566472 Q5W150 140 aa3.57□□□□□ -1.84
CLN3-223ENST00000566472 MEGF8Q7Z7M0 2845 aa3.57□□□□□ -1.84
CLN3-223ENST00000566472 PLA2G1BP04054 148 aaKnown RBP3.56□□□□□ -1.84
CLN3-223ENST00000566472 IGKV2-30P06310 120 aa3.56□□□□□ -1.84
CLN3-223ENST00000566472 BRK1Q8WUW1 75 aa3.56□□□□□ -1.84
CLN3-223ENST00000566472 DNAH5Q8TE73 4624 aa3.55□□□□□ -1.84
CLN3-223ENST00000566472 HRES1P13985 223 aa3.55□□□□□ -1.84
CLN3-223ENST00000566472 LINC01558Q9Y6Z2 57 aa3.55□□□□□ -1.84
CLN3-223ENST00000566472 DNAH11Q96DT5 4516 aa3.55□□□□□ -1.84
CLN3-223ENST00000566472 DNHD1Q96M86 4753 aa3.55□□□□□ -1.84
CLN3-223ENST00000566472 KMT2AQ03164 3969 aa3.54□□□□□ -1.84
CLN3-223ENST00000566472 A0A1B0GVY2 172 aa3.54□□□□□ -1.84
CLN3-223ENST00000566472 A8MUN3 132 aa3.54□□□□□ -1.84
CLN3-223ENST00000566472 Q5VV11 94 aa3.54□□□□□ -1.84
CLN3-223ENST00000566472 Q75L30 129 aa3.54□□□□□ -1.84
CLN3-223ENST00000566472 LINC00304Q8N9R0 145 aa3.54□□□□□ -1.84
CLN3-223ENST00000566472 DMAC1Q96GE9 116 aa3.54□□□□□ -1.84
CLN3-223ENST00000566472 PSPHP1O15172 72 aa3.53□□□□□ -1.84
CLN3-223ENST00000566472 ACYP2P14621 99 aa3.53□□□□□ -1.84
CLN3-223ENST00000566472 FBN3Q75N90 2809 aa3.53□□□□□ -1.84
CLN3-223ENST00000566472 TENM2Q9NT68 2774 aa3.52□□□□□ -1.85
CLN3-223ENST00000566472 PRR26Q8N8Z3 221 aa3.52□□□□□ -1.85
CLN3-223ENST00000566472 PRR15LQ9BU68 103 aa3.52□□□□□ -1.85
CLN3-223ENST00000566472 FRAS1Q86XX4 4008 aa3.51□□□□□ -1.85
CLN3-223ENST00000566472 CHKB-CPT1BH3BT56 60 aa3.5□□□□□ -1.85
CLN3-223ENST00000566472 KRTAP10-4P60372 401 aaPredicted RBP3.49□□□□□ -1.85
CLN3-223ENST00000566472 SACSQ9NZJ4 4579 aa3.48□□□□□ -1.85
CLN3-223ENST00000566472 C7orf65Q6ZTY9 151 aa3.48□□□□□ -1.85
CLN3-223ENST00000566472 FAT2Q9NYQ8 4349 aa3.48□□□□□ -1.85
CLN3-223ENST00000566472 SRRM2Q9UQ35 2752 aaKnown RBP3.48□□□□□ -1.85
CLN3-223ENST00000566472 IGKV2D-30A0A075B6S6 120 aa3.47□□□□□ -1.85
CLN3-223ENST00000566472 RETNLBQ9BQ08 111 aa3.47□□□□□ -1.85
CLN3-223ENST00000566472 PKD1P98161 4303 aa3.46□□□□□ -1.85
CLN3-223ENST00000566472 A8MUU9 505 aa3.46□□□□□ -1.86
CLN3-223ENST00000566472 C20orf166-AS1Q96NR2 134 aa3.46□□□□□ -1.86
CLN3-223ENST00000566472 CDC42SE1Q9NRR8 79 aa3.46□□□□□ -1.86
CLN3-223ENST00000566472 LRP1BQ9NZR2 4599 aa3.45□□□□□ -1.86
CLN3-223ENST00000566472 A6NED7 52 aa3.45□□□□□ -1.86
CLN3-223ENST00000566472 SMR3BP02814 79 aaPredicted RBP3.45□□□□□ -1.86
CLN3-223ENST00000566472 J3QL48 77 aa3.44□□□□□ -1.86
CLN3-223ENST00000566472 ATP11AUNQ6ZP68 121 aa3.43□□□□□ -1.86
CLN3-223ENST00000566472 TGP01266 2768 aa3.43□□□□□ -1.86
CLN3-223ENST00000566472 DYNC1H1Q14204 4646 aaKnown RBP3.42□□□□□ -1.86
CLN3-223ENST00000566472 LCA10Q71F78 164 aa3.42□□□□□ -1.86
CLN3-223ENST00000566472 HYDINQ4G0P3 5121 aa3.41□□□□□ -1.86
CLN3-223ENST00000566472 A0A1B0GU69 56 aa3.4□□□□□ -1.87
CLN3-223ENST00000566472 SPTSSBQ8NFR3 76 aa3.4□□□□□ -1.87
CLN3-223ENST00000566472 SPINK7P58062 85 aa3.39□□□□□ -1.87
CLN3-223ENST00000566472 C9orf92A6NGG3 77 aa3.38□□□□□ -1.87
CLN3-223ENST00000566472 KRTAP10-8P60410 259 aa3.38□□□□□ -1.87
CLN3-223ENST00000566472 VPS13BQ7Z7G8 4022 aa3.37□□□□□ -1.87
CLN3-223ENST00000566472 A8MU10 97 aa3.37□□□□□ -1.87
CLN3-223ENST00000566472 PMAIP1Q13794 54 aa3.37□□□□□ -1.87
CLN3-223ENST00000566472 KRTAP3-3Q9BYR6 98 aa3.37□□□□□ -1.87
CLN3-223ENST00000566472 KRTAP3-2Q9BYR7 98 aa3.37□□□□□ -1.87
CLN3-223ENST00000566472 APOBP04114 4563 aaKnown RBP3.36□□□□□ -1.87
CLN3-223ENST00000566472 PKHD1L1Q86WI1 4243 aa3.36□□□□□ -1.87
CLN3-223ENST00000566472 A6NN06 94 aa3.35□□□□□ -1.87
CLN3-223ENST00000566472 UQCR11O14957 56 aa3.35□□□□□ -1.87
CLN3-223ENST00000566472 Q5VSD8 79 aa3.35□□□□□ -1.87
CLN3-223ENST00000566472 SPATA8Q6RVD6 105 aa3.35□□□□□ -1.87
CLN3-223ENST00000566472 Q8N1X5 172 aa3.35□□□□□ -1.87
CLN3-223ENST00000566472 SEC61GP60059 68 aa3.34□□□□□ -1.87
CLN3-223ENST00000566472 KTN1-AS1Q86SY8 53 aa3.34□□□□□ -1.87
CLN3-223ENST00000566472 RYR2Q92736 4967 aa3.34□□□□□ -1.88
CLN3-223ENST00000566472 COX6B2Q6YFQ2 88 aa3.33□□□□□ -1.88
CLN3-223ENST00000566472 RPL37P61927 97 aaKnown RBP3.32□□□□□ -1.88
CLN3-223ENST00000566472 MIR22HGQ0VDD5 57 aa3.32□□□□□ -1.88
CLN3-223ENST00000566472 KRTAP3-1Q9BYR8 98 aa3.31□□□□□ -1.88
CLN3-223ENST00000566472 PKHD1P08F94 4074 aa3.29□□□□□ -1.88
CLN3-223ENST00000566472 XP32Q5T750 250 aa3.27□□□□□ -1.89
CLN3-223ENST00000566472 LCE2DQ5TA82 110 aaPredicted RBP3.27□□□□□ -1.89
CLN3-223ENST00000566472 FLG2Q5D862 2391 aaPredicted RBP3.26□□□□□ -1.89
CLN3-223ENST00000566472 MT1HL1P0DM35 61 aa3.26□□□□□ -1.89
CLN3-223ENST00000566472 FAT1Q14517 4588 aa3.25□□□□□ -1.89
CLN3-223ENST00000566472 H1FX-AS1Q4G0G2 97 aa3.24□□□□□ -1.89
CLN3-223ENST00000566472 A0A1B0GU33 70 aa3.23□□□□□ -1.89
CLN3-223ENST00000566472 TPRXLQ17RH7 258 aa3.22□□□□□ -1.89
CLN3-223ENST00000566472 FAT3Q8TDW7 4589 aa3.22□□□□□ -1.89
CLN3-223ENST00000566472 RYR1P21817 5038 aa3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms