RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 DSCR8Q96T75 97 aa5.15□□□□□ -1.59
CLN3-220ENST00000566040 SIGMAR1Q99720 223 aa5.15□□□□□ -1.59
CLN3-220ENST00000566040 VPS25Q9BRG1 176 aa5.15□□□□□ -1.59
CLN3-220ENST00000566040 JMJD7-PLA2G4BH0Y9G9 81 aa5.14□□□□□ -1.59
CLN3-220ENST00000566040 SPCS1Q9Y6A9 102 aa5.13□□□□□ -1.59
CLN3-220ENST00000566040 MT1HP80294 61 aa5.12□□□□□ -1.59
CLN3-220ENST00000566040 COL5A1-AS1Q5SY13 56 aa5.12□□□□□ -1.59
CLN3-220ENST00000566040 A0A0U1RQV1 116 aa5.11□□□□□ -1.59
CLN3-220ENST00000566040 A0A1B0GVX0 72 aa5.11□□□□□ -1.59
CLN3-220ENST00000566040 K7EP34 96 aa5.1□□□□□ -1.59
CLN3-220ENST00000566040 IGHV6-1A0A0B4J1U7 121 aa5.09□□□□□ -1.59
CLN3-220ENST00000566040 IGKV3D-7A0A0C4DH55 119 aa5.08□□□□□ -1.6
CLN3-220ENST00000566040 A0A1B0GW54 56 aa5.08□□□□□ -1.6
CLN3-220ENST00000566040 PDE6GP18545 87 aa5.08□□□□□ -1.6
CLN3-220ENST00000566040 LINC00313P59037 77 aa5.08□□□□□ -1.6
CLN3-220ENST00000566040 A8MWP4 228 aa5.05□□□□□ -1.6
CLN3-220ENST00000566040 C21orf62-AS1Q17RA5 79 aa5.05□□□□□ -1.6
CLN3-220ENST00000566040 C8orf87E5RJ46 101 aa5.04□□□□□ -1.6
CLN3-220ENST00000566040 J3KT08 172 aa5.04□□□□□ -1.6
CLN3-220ENST00000566040 ATP11AUNQ6ZP68 121 aa5.04□□□□□ -1.6
CLN3-220ENST00000566040 MPLKIPQ8TAP9 179 aa5.04□□□□□ -1.6
CLN3-220ENST00000566040 MMP24-AS1A0A0U1RRL7 71 aa5.03□□□□□ -1.6
CLN3-220ENST00000566040 Q8N9P0 234 aaPredicted RBP5.03□□□□□ -1.6
CLN3-220ENST00000566040 C8orf17Q9NRJ1 99 aa5.03□□□□□ -1.6
CLN3-220ENST00000566040 K7EQZ3 153 aa5.02□□□□□ -1.61
CLN3-220ENST00000566040 HRES1P13985 223 aa5.02□□□□□ -1.61
CLN3-220ENST00000566040 PRR15Q8IV56 129 aa5.02□□□□□ -1.61
CLN3-220ENST00000566040 LORP23490 312 aaPredicted RBP5.01□□□□□ -1.61
CLN3-220ENST00000566040 Q6ZVQ6 151 aa5.01□□□□□ -1.61
CLN3-220ENST00000566040 NREPQ16612 68 aa5□□□□□ -1.61
CLN3-220ENST00000566040 KRTAP9-2Q9BYQ4 174 aa5□□□□□ -1.61
CLN3-220ENST00000566040 LINC00846Q9NV44 126 aa5□□□□□ -1.61
CLN3-220ENST00000566040 KRTAP10-6P60371 365 aaPredicted RBP4.99□□□□□ -1.61
CLN3-220ENST00000566040 Q8N9L7 120 aa4.98□□□□□ -1.61
CLN3-220ENST00000566040 ZCCHC13Q8WW36 166 aaKnown RBP4.98□□□□□ -1.61
CLN3-220ENST00000566040 ETDBQ3ZM63 59 aa4.96□□□□□ -1.62
CLN3-220ENST00000566040 A0A1B0GV90 55 aa4.95□□□□□ -1.62
CLN3-220ENST00000566040 F8W1H4 67 aa4.95□□□□□ -1.62
CLN3-220ENST00000566040 BPY2O14599 106 aa4.95□□□□□ -1.62
CLN3-220ENST00000566040 NDUFB1O75438 58 aa4.95□□□□□ -1.62
CLN3-220ENST00000566040 GTF2H5Q6ZYL4 71 aa4.95□□□□□ -1.62
CLN3-220ENST00000566040 TMEM254Q8TBM7 123 aa4.95□□□□□ -1.62
CLN3-220ENST00000566040 MRPL34Q9BQ48 92 aaKnown RBP4.93□□□□□ -1.62
CLN3-220ENST00000566040 COX6B2Q6YFQ2 88 aa4.92□□□□□ -1.62
CLN3-220ENST00000566040 hDV103S1A0JD37 113 aa4.91□□□□□ -1.62
CLN3-220ENST00000566040 Q5W150 140 aa4.91□□□□□ -1.62
CLN3-220ENST00000566040 SPINK7P58062 85 aa4.9□□□□□ -1.63
CLN3-220ENST00000566040 KRTAP9-8Q9BYQ0 159 aa4.89□□□□□ -1.63
CLN3-220ENST00000566040 WFDC13Q8IUB5 93 aa4.88□□□□□ -1.63
CLN3-220ENST00000566040 CASC2Q6XLA1 102 aa4.86□□□□□ -1.63
CLN3-220ENST00000566040 UBL5Q9BZL1 73 aa4.86□□□□□ -1.63
CLN3-220ENST00000566040 HCG22E2RYF7 251 aa4.83□□□□□ -1.64
CLN3-220ENST00000566040 M0R2T5 61 aa4.83□□□□□ -1.64
CLN3-220ENST00000566040 CXCL6P80162 114 aa4.83□□□□□ -1.64
CLN3-220ENST00000566040 FAM240AA0A1B0GVK7 77 aa4.82□□□□□ -1.64
CLN3-220ENST00000566040 LCE2BO14633 110 aa4.82□□□□□ -1.64
CLN3-220ENST00000566040 MT2AP02795 61 aa4.82□□□□□ -1.64
CLN3-220ENST00000566040 NDUFS5O43920 106 aa4.8□□□□□ -1.64
CLN3-220ENST00000566040 MT1FP04733 61 aa4.8□□□□□ -1.64
CLN3-220ENST00000566040 RBM12B-AS1Q9P1G2 102 aa4.8□□□□□ -1.64
CLN3-220ENST00000566040 FAM236DA0A1B0GTK5 79 aa4.78□□□□□ -1.64
CLN3-220ENST00000566040 FAM236CP0DP71 79 aa4.78□□□□□ -1.64
CLN3-220ENST00000566040 USH2AO75445 5202 aa4.77□□□□□ -1.65
CLN3-220ENST00000566040 IGKV2D-30A0A075B6S6 120 aa4.76□□□□□ -1.65
CLN3-220ENST00000566040 KRTAP9-6A0A140TA67 174 aa4.76□□□□□ -1.65
CLN3-220ENST00000566040 IGKV2-30P06310 120 aa4.76□□□□□ -1.65
CLN3-220ENST00000566040 ACYP1P07311 99 aa4.76□□□□□ -1.65
CLN3-220ENST00000566040 KRTAP3-1Q9BYR8 98 aa4.76□□□□□ -1.65
CLN3-220ENST00000566040 FSIP2Q5CZC0 6907 aa4.75□□□□□ -1.65
CLN3-220ENST00000566040 C7orf65Q6ZTY9 151 aa4.75□□□□□ -1.65
CLN3-220ENST00000566040 KRTAP9-3Q9BYQ3 159 aa4.73□□□□□ -1.65
CLN3-220ENST00000566040 A0A087WVE0 104 aa4.72□□□□□ -1.65
CLN3-220ENST00000566040 ATP5EP2Q5VTU8 51 aa4.72□□□□□ -1.65
CLN3-220ENST00000566040 C4orf26Q17RF5 130 aa4.71□□□□□ -1.66
CLN3-220ENST00000566040 CRCT1Q9UGL9 99 aa4.71□□□□□ -1.66
CLN3-220ENST00000566040 H1FX-AS1Q4G0G2 97 aa4.7□□□□□ -1.66
CLN3-220ENST00000566040 SSPOA2VEC9 5147 aa4.69□□□□□ -1.66
CLN3-220ENST00000566040 H3BS24 57 aa4.69□□□□□ -1.66
CLN3-220ENST00000566040 LINC00643Q86TS7 51 aa4.69□□□□□ -1.66
CLN3-220ENST00000566040 TP53AIP1Q9HCN2 124 aa4.68□□□□□ -1.66
CLN3-220ENST00000566040 HIST1H4AP62805 103 aaKnown RBP4.65□□□□□ -1.67
CLN3-220ENST00000566040 CYP4F30PQ9H0H9 118 aa4.65□□□□□ -1.67
CLN3-220ENST00000566040 TRAV22A0A0B4J277 110 aa4.64□□□□□ -1.67
CLN3-220ENST00000566040 KRTAP10-10P60014 251 aa4.63□□□□□ -1.67
CLN3-220ENST00000566040 OCR1Q9BZK8 76 aa4.63□□□□□ -1.67
CLN3-220ENST00000566040 C1orf64Q8NEQ6 169 aa4.6□□□□□ -1.67
CLN3-220ENST00000566040 H0Y9P7 68 aa4.59□□□□□ -1.67
CLN3-220ENST00000566040 K7ERU9 68 aa4.59□□□□□ -1.67
CLN3-220ENST00000566040 UQCRQO14949 82 aa4.59□□□□□ -1.67
CLN3-220ENST00000566040 LCA10Q71F78 164 aa4.59□□□□□ -1.67
CLN3-220ENST00000566040 SVIPQ8NHG7 77 aa4.59□□□□□ -1.67
CLN3-220ENST00000566040 LOC101927531A0A1B0GV80 90 aa4.58□□□□□ -1.68
CLN3-220ENST00000566040 J3QR89 54 aa4.58□□□□□ -1.68
CLN3-220ENST00000566040 KLKP1Q107X0 134 aa4.57□□□□□ -1.68
CLN3-220ENST00000566040 FCGBPQ9Y6R7 5405 aaPredicted RBP4.57□□□□□ -1.68
CLN3-220ENST00000566040 MT-ATP8P03928 68 aa4.56□□□□□ -1.68
CLN3-220ENST00000566040 C5orf47Q569G3 176 aa4.55□□□□□ -1.68
CLN3-220ENST00000566040 KRTAP19-1Q8IUB9 90 aa4.55□□□□□ -1.68
CLN3-220ENST00000566040 S4R3F8 94 aa4.55□□□□□ -1.68
CLN3-220ENST00000566040 ATOX1O00244 68 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 90.4 ms