RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 VPS25Q9BRG1 176 aa5.45□□□□□ -1.54
VPS39-208ENST00000564994 SSPOA2VEC9 5147 aa5.45□□□□□ -1.54
VPS39-208ENST00000564994 HRES1P13985 223 aa5.44□□□□□ -1.54
VPS39-208ENST00000564994 RBM3P98179 157 aaKnown RBP5.44□□□□□ -1.54
VPS39-208ENST00000564994 MPLKIPQ8TAP9 179 aa5.43□□□□□ -1.54
VPS39-208ENST00000564994 A0A1B0GVX0 72 aa5.42□□□□□ -1.54
VPS39-208ENST00000564994 BAALC-AS2P0C853 105 aa5.42□□□□□ -1.54
VPS39-208ENST00000564994 DSCR8Q96T75 97 aa5.42□□□□□ -1.54
VPS39-208ENST00000564994 C8orf87E5RJ46 101 aa5.41□□□□□ -1.54
VPS39-208ENST00000564994 FAM236DA0A1B0GTK5 79 aa5.4□□□□□ -1.54
VPS39-208ENST00000564994 FAM236CP0DP71 79 aa5.4□□□□□ -1.54
VPS39-208ENST00000564994 C9JAW5 83 aa5.39□□□□□ -1.55
VPS39-208ENST00000564994 Q6ZQT0 140 aa5.39□□□□□ -1.55
VPS39-208ENST00000564994 NAA38Q9BRA0 125 aaKnown RBP5.39□□□□□ -1.55
VPS39-208ENST00000564994 LOC100996750A0A140TA64 210 aa5.38□□□□□ -1.55
VPS39-208ENST00000564994 MT2AP02795 61 aa5.38□□□□□ -1.55
VPS39-208ENST00000564994 KRTAP4-6Q9BYQ5 205 aa5.38□□□□□ -1.55
VPS39-208ENST00000564994 RBM12B-AS1Q9P1G2 102 aa5.38□□□□□ -1.55
VPS39-208ENST00000564994 J3KT08 172 aa5.37□□□□□ -1.55
VPS39-208ENST00000564994 M0R143 59 aa5.37□□□□□ -1.55
VPS39-208ENST00000564994 ZCCHC13Q8WW36 166 aaKnown RBP5.36□□□□□ -1.55
VPS39-208ENST00000564994 ATXN8Q156A1 80 aa5.35□□□□□ -1.55
VPS39-208ENST00000564994 C21orf62-AS1Q17RA5 79 aa5.35□□□□□ -1.55
VPS39-208ENST00000564994 LOC110117498A0A087WWA1 95 aa5.34□□□□□ -1.55
VPS39-208ENST00000564994 MT1FP04733 61 aa5.34□□□□□ -1.55
VPS39-208ENST00000564994 Q8N9P0 234 aaPredicted RBP5.34□□□□□ -1.55
VPS39-208ENST00000564994 JMJD7-PLA2G4BH0Y9G9 81 aa5.33□□□□□ -1.56
VPS39-208ENST00000564994 SPINK7P58062 85 aa5.33□□□□□ -1.56
VPS39-208ENST00000564994 IGKV3D-7A0A0C4DH55 119 aa5.32□□□□□ -1.56
VPS39-208ENST00000564994 NDUFB1O75438 58 aa5.32□□□□□ -1.56
VPS39-208ENST00000564994 C8orf17Q9NRJ1 99 aa5.32□□□□□ -1.56
VPS39-208ENST00000564994 A8MWP4 228 aa5.31□□□□□ -1.56
VPS39-208ENST00000564994 C14orf132Q9NPU4 83 aa5.31□□□□□ -1.56
VPS39-208ENST00000564994 A0A1B0GW54 56 aa5.3□□□□□ -1.56
VPS39-208ENST00000564994 COL5A1-AS1Q5SY13 56 aa5.3□□□□□ -1.56
VPS39-208ENST00000564994 PDE6GP18545 87 aa5.29□□□□□ -1.56
VPS39-208ENST00000564994 KRTAP9-3Q9BYQ3 159 aa5.29□□□□□ -1.56
VPS39-208ENST00000564994 A0A1B0GV90 55 aa5.28□□□□□ -1.56
VPS39-208ENST00000564994 KRTAP10-10P60014 251 aa5.28□□□□□ -1.56
VPS39-208ENST00000564994 MTURNQ8N3F0 131 aa5.27□□□□□ -1.57
VPS39-208ENST00000564994 FCGBPQ9Y6R7 5405 aaPredicted RBP5.27□□□□□ -1.57
VPS39-208ENST00000564994 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.26□□□□□ -1.57
VPS39-208ENST00000564994 BATFQ16520 125 aa5.26□□□□□ -1.57
VPS39-208ENST00000564994 Q6ZVQ6 151 aa5.26□□□□□ -1.57
VPS39-208ENST00000564994 PRR15Q8IV56 129 aa5.26□□□□□ -1.57
VPS39-208ENST00000564994 MMP24-AS1A0A0U1RRL7 71 aa5.25□□□□□ -1.57
VPS39-208ENST00000564994 NREPQ16612 68 aa5.25□□□□□ -1.57
VPS39-208ENST00000564994 LYRM7Q5U5X0 104 aa5.25□□□□□ -1.57
VPS39-208ENST00000564994 WFDC13Q8IUB5 93 aa5.25□□□□□ -1.57
VPS39-208ENST00000564994 KRTAP19-1Q8IUB9 90 aa5.22□□□□□ -1.57
VPS39-208ENST00000564994 TMEM254Q8TBM7 123 aa5.22□□□□□ -1.57
VPS39-208ENST00000564994 MRPL34Q9BQ48 92 aaKnown RBP5.22□□□□□ -1.57
VPS39-208ENST00000564994 K7EQZ3 153 aa5.21□□□□□ -1.58
VPS39-208ENST00000564994 MACF1Q9UPN3 7388 aaKnown RBP5.21□□□□□ -1.58
VPS39-208ENST00000564994 C9orf118A6NHY6 69 aa5.2□□□□□ -1.58
VPS39-208ENST00000564994 KRTAP9-7A8MTY7 169 aa5.2□□□□□ -1.58
VPS39-208ENST00000564994 H3BT86 120 aa5.2□□□□□ -1.58
VPS39-208ENST00000564994 TAX1BP3O14907 124 aa5.2□□□□□ -1.58
VPS39-208ENST00000564994 SYNE2Q8WXH0 6885 aaKnown RBP5.2□□□□□ -1.58
VPS39-208ENST00000564994 A0A1W2PPM0 123 aa5.19□□□□□ -1.58
VPS39-208ENST00000564994 hDV103S1A0JD37 113 aa5.19□□□□□ -1.58
VPS39-208ENST00000564994 NDUFS5O43920 106 aa5.16□□□□□ -1.58
VPS39-208ENST00000564994 BPY2O14599 106 aa5.15□□□□□ -1.59
VPS39-208ENST00000564994 Q5W150 140 aa5.15□□□□□ -1.59
VPS39-208ENST00000564994 H1FX-AS1Q4G0G2 97 aa5.14□□□□□ -1.59
VPS39-208ENST00000564994 GTF2H5Q6ZYL4 71 aa5.13□□□□□ -1.59
VPS39-208ENST00000564994 Q8N9L7 120 aa5.13□□□□□ -1.59
VPS39-208ENST00000564994 IGKV2D-30A0A075B6S6 120 aa5.12□□□□□ -1.59
VPS39-208ENST00000564994 IGKV2-30P06310 120 aa5.12□□□□□ -1.59
VPS39-208ENST00000564994 KRTAP19-6Q3LI70 58 aa5.1□□□□□ -1.59
VPS39-208ENST00000564994 SPCS1Q9Y6A9 102 aa5.1□□□□□ -1.59
VPS39-208ENST00000564994 HCG22E2RYF7 251 aa5.09□□□□□ -1.59
VPS39-208ENST00000564994 CASC2Q6XLA1 102 aa5.09□□□□□ -1.59
VPS39-208ENST00000564994 C7orf65Q6ZTY9 151 aa5.09□□□□□ -1.59
VPS39-208ENST00000564994 K7EP34 96 aa5.07□□□□□ -1.6
VPS39-208ENST00000564994 LINC00846Q9NV44 126 aa5.06□□□□□ -1.6
VPS39-208ENST00000564994 PRO0461Q9UI25 63 aa5.06□□□□□ -1.6
VPS39-208ENST00000564994 C4orf26Q17RF5 130 aa5.05□□□□□ -1.6
VPS39-208ENST00000564994 K7ERU9 68 aa5.04□□□□□ -1.6
VPS39-208ENST00000564994 CXCL6P80162 114 aa5.03□□□□□ -1.6
VPS39-208ENST00000564994 KRTAP3-1Q9BYR8 98 aa5.01□□□□□ -1.61
VPS39-208ENST00000564994 UBL5Q9BZL1 73 aa5.01□□□□□ -1.61
VPS39-208ENST00000564994 F8W1H4 67 aa5□□□□□ -1.61
VPS39-208ENST00000564994 J3QR89 54 aa5□□□□□ -1.61
VPS39-208ENST00000564994 C5orf47Q569G3 176 aa4.97□□□□□ -1.61
VPS39-208ENST00000564994 C1orf64Q8NEQ6 169 aa4.94□□□□□ -1.62
VPS39-208ENST00000564994 S4R3F8 94 aa4.93□□□□□ -1.62
VPS39-208ENST00000564994 LCA10Q71F78 164 aa4.92□□□□□ -1.62
VPS39-208ENST00000564994 TP53AIP1Q9HCN2 124 aa4.91□□□□□ -1.62
VPS39-208ENST00000564994 FAM236AA0A1B0GUQ0 79 aa4.9□□□□□ -1.63
VPS39-208ENST00000564994 FAM236BA0A1B0GV22 79 aa4.9□□□□□ -1.63
VPS39-208ENST00000564994 ETDBQ3ZM63 59 aa4.9□□□□□ -1.63
VPS39-208ENST00000564994 KRTAP4-8Q9BYQ9 185 aa4.9□□□□□ -1.63
VPS39-208ENST00000564994 MT1BP07438 61 aa4.89□□□□□ -1.63
VPS39-208ENST00000564994 KRTAP6-3Q3LI67 103 aa4.89□□□□□ -1.63
VPS39-208ENST00000564994 CSAG1Q6PB30 78 aa4.89□□□□□ -1.63
VPS39-208ENST00000564994 SPRR2GQ9BYE4 73 aa4.87□□□□□ -1.63
VPS39-208ENST00000564994 KRTAP19-8Q3LI54 63 aa4.86□□□□□ -1.63
VPS39-208ENST00000564994 CYP4F30PQ9H0H9 118 aa4.86□□□□□ -1.63
VPS39-208ENST00000564994 NEBP20929 6669 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms