RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 A0A1B0GVX0 72 aa11.35□□□□□ -0.59
CLN3-212ENST00000564574 C9orf92A6NGG3 77 aa11.34□□□□□ -0.59
CLN3-212ENST00000564574 DSCR10P59022 87 aa11.34□□□□□ -0.59
CLN3-212ENST00000564574 CDIP1Q9H305 208 aa11.34□□□□□ -0.59
CLN3-212ENST00000564574 IGHV6-1A0A0B4J1U7 121 aa11.32□□□□□ -0.6
CLN3-212ENST00000564574 C8orf87E5RJ46 101 aa11.32□□□□□ -0.6
CLN3-212ENST00000564574 IGKV3D-7A0A0C4DH55 119 aa11.3□□□□□ -0.6
CLN3-212ENST00000564574 K7ERU9 68 aa11.3□□□□□ -0.6
CLN3-212ENST00000564574 LINC00313P59037 77 aa11.3□□□□□ -0.6
CLN3-212ENST00000564574 PRR15Q8IV56 129 aa11.3□□□□□ -0.6
CLN3-212ENST00000564574 CXCL6P80162 114 aa11.29□□□□□ -0.6
CLN3-212ENST00000564574 LPAP08519 4548 aa11.29□□□□□ -0.6
CLN3-212ENST00000564574 XP32Q5T750 250 aa11.27□□□□□ -0.61
CLN3-212ENST00000564574 K7EQZ3 153 aa11.26□□□□□ -0.61
CLN3-212ENST00000564574 ATP5EP2Q5VTU8 51 aa11.26□□□□□ -0.61
CLN3-212ENST00000564574 LINC00643Q86TS7 51 aa11.24□□□□□ -0.61
CLN3-212ENST00000564574 RNF213Q63HN8 5207 aa11.23□□□□□ -0.61
CLN3-212ENST00000564574 C8orf17Q9NRJ1 99 aa11.23□□□□□ -0.61
CLN3-212ENST00000564574 NOTCH2NLQ7Z3S9 236 aa11.22□□□□□ -0.61
CLN3-212ENST00000564574 Q8N9L7 120 aa11.19□□□□□ -0.62
CLN3-212ENST00000564574 KRTAP16-1A8MUX0 517 aa11.18□□□□□ -0.62
CLN3-212ENST00000564574 MMP24-AS1A0A0U1RRL7 71 aa11.17□□□□□ -0.62
CLN3-212ENST00000564574 RPL37P61927 97 aaKnown RBP11.15□□□□□ -0.62
CLN3-212ENST00000564574 Q75L30 129 aa11.15□□□□□ -0.62
CLN3-212ENST00000564574 C20orf166-AS1Q96NR2 134 aa11.15□□□□□ -0.62
CLN3-212ENST00000564574 A8MUU9 505 aa11.13□□□□□ -0.63
CLN3-212ENST00000564574 TMEM254Q8TBM7 123 aa11.13□□□□□ -0.63
CLN3-212ENST00000564574 hDV103S1A0JD37 113 aa11.11□□□□□ -0.63
CLN3-212ENST00000564574 SEC61BP60468 96 aaKnown RBP11.11□□□□□ -0.63
CLN3-212ENST00000564574 MUC17Q685J3 4493 aa11.1□□□□□ -0.63
CLN3-212ENST00000564574 HCG22E2RYF7 251 aa11.09□□□□□ -0.63
CLN3-212ENST00000564574 MRPL34Q9BQ48 92 aaKnown RBP11.09□□□□□ -0.63
CLN3-212ENST00000564574 CASC2Q6XLA1 102 aa11.08□□□□□ -0.64
CLN3-212ENST00000564574 Q8N9P0 234 aaPredicted RBP11.07□□□□□ -0.64
CLN3-212ENST00000564574 HIST1H4AP62805 103 aaKnown RBP11.06□□□□□ -0.64
CLN3-212ENST00000564574 WFDC13Q8IUB5 93 aa11.06□□□□□ -0.64
CLN3-212ENST00000564574 ATP11AUNQ6ZP68 121 aa11.03□□□□□ -0.64
CLN3-212ENST00000564574 PCOTHQ58A44 107 aa10.99□□□□□ -0.65
CLN3-212ENST00000564574 NDUFS5O43920 106 aa10.96□□□□□ -0.65
CLN3-212ENST00000564574 IMUPQ9GZP8 106 aa10.96□□□□□ -0.65
CLN3-212ENST00000564574 A0A087WVE0 104 aa10.94□□□□□ -0.66
CLN3-212ENST00000564574 MT-ATP8P03928 68 aa10.94□□□□□ -0.66
CLN3-212ENST00000564574 ZCCHC13Q8WW36 166 aaKnown RBP10.92□□□□□ -0.66
CLN3-212ENST00000564574 TP53AIP1Q9HCN2 124 aa10.87□□□□□ -0.67
CLN3-212ENST00000564574 KRTAP4-1Q9BYQ7 146 aa10.8□□□□□ -0.68
CLN3-212ENST00000564574 Q5W150 140 aa10.76□□□□□ -0.69
CLN3-212ENST00000564574 MUC2Q02817 5179 aa10.76□□□□□ -0.69
CLN3-212ENST00000564574 UQCRQO14949 82 aa10.73□□□□□ -0.69
CLN3-212ENST00000564574 SCGB1A1P11684 91 aa10.73□□□□□ -0.69
CLN3-212ENST00000564574 FAM236AA0A1B0GUQ0 79 aa10.71□□□□□ -0.69
CLN3-212ENST00000564574 FAM236BA0A1B0GV22 79 aa10.71□□□□□ -0.69
CLN3-212ENST00000564574 A0A0U1RQV1 116 aa10.7□□□□□ -0.7
CLN3-212ENST00000564574 OCR1Q9BZK8 76 aa10.69□□□□□ -0.7
CLN3-212ENST00000564574 TRAV22A0A0B4J277 110 aa10.68□□□□□ -0.7
CLN3-212ENST00000564574 SPINK7P58062 85 aa10.68□□□□□ -0.7
CLN3-212ENST00000564574 C7orf65Q6ZTY9 151 aa10.64□□□□□ -0.71
CLN3-212ENST00000564574 SMIM20Q8N5G0 67 aa10.64□□□□□ -0.71
CLN3-212ENST00000564574 IGKV2D-30A0A075B6S6 120 aa10.62□□□□□ -0.71
CLN3-212ENST00000564574 ATOX1O00244 68 aa10.62□□□□□ -0.71
CLN3-212ENST00000564574 IGKV2-30P06310 120 aa10.62□□□□□ -0.71
CLN3-212ENST00000564574 H0Y9P7 68 aa10.6□□□□□ -0.71
CLN3-212ENST00000564574 HRES1P13985 223 aa10.59□□□□□ -0.71
CLN3-212ENST00000564574 C5orf47Q569G3 176 aa10.59□□□□□ -0.71
CLN3-212ENST00000564574 LOC101927531A0A1B0GV80 90 aa10.57□□□□□ -0.72
CLN3-212ENST00000564574 MP68P56378 58 aa10.57□□□□□ -0.72
CLN3-212ENST00000564574 TRAV7A0A075B6U4 112 aa10.56□□□□□ -0.72
CLN3-212ENST00000564574 FAT4Q6V0I7 4981 aa10.55□□□□□ -0.72
CLN3-212ENST00000564574 MPLKIPQ8TAP9 179 aa10.53□□□□□ -0.72
CLN3-212ENST00000564574 H3BPC8 53 aa10.52□□□□□ -0.73
CLN3-212ENST00000564574 RBM12B-AS1Q9P1G2 102 aa10.52□□□□□ -0.73
CLN3-212ENST00000564574 LCE2AQ5TA79 106 aaPredicted RBP10.5□□□□□ -0.73
CLN3-212ENST00000564574 C1orf64Q8NEQ6 169 aa10.49□□□□□ -0.73
CLN3-212ENST00000564574 LINC00208Q96KT6 92 aa10.49□□□□□ -0.73
CLN3-212ENST00000564574 CYP4F30PQ9H0H9 118 aa10.49□□□□□ -0.73
CLN3-212ENST00000564574 KRTAP19-2Q3LHN2 52 aa10.48□□□□□ -0.73
CLN3-212ENST00000564574 COX6B2Q6YFQ2 88 aa10.45□□□□□ -0.74
CLN3-212ENST00000564574 SERP2Q8N6R1 65 aa10.44□□□□□ -0.74
CLN3-212ENST00000564574 KRTAP9-2Q9BYQ4 174 aa10.44□□□□□ -0.74
CLN3-212ENST00000564574 FAM236DA0A1B0GTK5 79 aa10.42□□□□□ -0.74
CLN3-212ENST00000564574 FAM236CP0DP71 79 aa10.42□□□□□ -0.74
CLN3-212ENST00000564574 LCE2CQ5TA81 110 aa10.4□□□□□ -0.74
CLN3-212ENST00000564574 C4orf26Q17RF5 130 aa10.35□□□□□ -0.75
CLN3-212ENST00000564574 COX7CP15954 63 aa10.31□□□□□ -0.76
CLN3-212ENST00000564574 KLKP1Q107X0 134 aa10.31□□□□□ -0.76
CLN3-212ENST00000564574 C20orf197Q8N268 126 aa10.27□□□□□ -0.77
CLN3-212ENST00000564574 ANAPC13Q9BS18 74 aa10.27□□□□□ -0.77
CLN3-212ENST00000564574 FLGP20930 4061 aaPredicted RBP10.27□□□□□ -0.77
CLN3-212ENST00000564574 H1FX-AS1Q4G0G2 97 aa10.25□□□□□ -0.77
CLN3-212ENST00000564574 MT1HP80294 61 aa10.24□□□□□ -0.77
CLN3-212ENST00000564574 SNURFQ9Y675 71 aa10.24□□□□□ -0.77
CLN3-212ENST00000564574 KRTAP3-1Q9BYR8 98 aa10.21□□□□□ -0.77
CLN3-212ENST00000564574 A8MUN3 132 aa10.17□□□□□ -0.78
CLN3-212ENST00000564574 KRTAP9-6A0A140TA67 174 aa10.14□□□□□ -0.79
CLN3-212ENST00000564574 M0R2T5 61 aa10.12□□□□□ -0.79
CLN3-212ENST00000564574 NDUFC1O43677 76 aa10.09□□□□□ -0.79
CLN3-212ENST00000564574 SPANXA2-OT1Q8N9U9 137 aa10.07□□□□□ -0.8
CLN3-212ENST00000564574 DMAC1Q96GE9 116 aa10.07□□□□□ -0.8
CLN3-212ENST00000564574 S4R3F8 94 aa10.06□□□□□ -0.8
CLN3-212ENST00000564574 CCDC179H3BU77 68 aa10.02□□□□□ -0.81
CLN3-212ENST00000564574 LCE2DQ5TA82 110 aaPredicted RBP9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 235.7 ms