RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 SPTBN1Q01082 2364 aaKnown RBP2.69□□□□□ -1.98
VPS35-205ENST00000563984 CELSR2Q9HCU4 2923 aa2.68□□□□□ -1.98
VPS35-205ENST00000563984 DEFB131AP59861 70 aa2.68□□□□□ -1.98
VPS35-205ENST00000563984 PRR9Q5T870 116 aa2.68□□□□□ -1.98
VPS35-205ENST00000563984 DEFB104AQ8WTQ1 72 aa2.68□□□□□ -1.98
VPS35-205ENST00000563984 MRPL34Q9BQ48 92 aaKnown RBP2.68□□□□□ -1.98
VPS35-205ENST00000563984 RTTNQ86VV8 2226 aa2.68□□□□□ -1.98
VPS35-205ENST00000563984 C10orf99Q6UWK7 81 aa2.67□□□□□ -1.98
VPS35-205ENST00000563984 NBASA2RRP1 2371 aa2.67□□□□□ -1.98
VPS35-205ENST00000563984 NIPBLQ6KC79 2804 aaeCLIP2.67□□□□□ -1.98
VPS35-205ENST00000563984 TLN1Q9Y490 2541 aaKnown RBP2.67□□□□□ -1.98
VPS35-205ENST00000563984 SPG11Q96JI7 2443 aa2.66□□□□□ -1.98
VPS35-205ENST00000563984 KAAG1Q9UBP8 84 aa2.66□□□□□ -1.98
VPS35-205ENST00000563984 KNL1Q8NG31 2342 aa2.66□□□□□ -1.98
VPS35-205ENST00000563984 CRYBG3Q68DQ2 2970 aa2.66□□□□□ -1.98
VPS35-205ENST00000563984 CSMD1Q96PZ7 3565 aa2.66□□□□□ -1.98
VPS35-205ENST00000563984 HIVEP1P15822 2718 aa2.65□□□□□ -1.98
VPS35-205ENST00000563984 OTOGQ6ZRI0 2925 aa2.65□□□□□ -1.99
VPS35-205ENST00000563984 NBEAL1Q6ZS30 2694 aa2.65□□□□□ -1.99
VPS35-205ENST00000563984 BOD1L1Q8NFC6 3051 aa2.65□□□□□ -1.99
VPS35-205ENST00000563984 MTORP42345 2549 aa2.64□□□□□ -1.99
VPS35-205ENST00000563984 ANKHD1Q8IWZ3 2542 aaKnown RBP2.64□□□□□ -1.99
VPS35-205ENST00000563984 H0YAA0 97 aa2.64□□□□□ -1.99
VPS35-205ENST00000563984 H0YGG7 62 aa2.64□□□□□ -1.99
VPS35-205ENST00000563984 USMG5Q96IX5 58 aa2.64□□□□□ -1.99
VPS35-205ENST00000563984 ADGRG4Q8IZF6 3080 aa2.63□□□□□ -1.99
VPS35-205ENST00000563984 RP1L1Q8IWN7 2480 aaPredicted RBP2.63□□□□□ -1.99
VPS35-205ENST00000563984 PDZD2O15018 2839 aa2.63□□□□□ -1.99
VPS35-205ENST00000563984 DEFB109BQ30KR1 87 aa2.63□□□□□ -1.99
VPS35-205ENST00000563984 Q6ZRN7 208 aaPredicted RBP2.63□□□□□ -1.99
VPS35-205ENST00000563984 COX14Q96I36 57 aa2.63□□□□□ -1.99
VPS35-205ENST00000563984 SPENQ96T58 3664 aaKnown RBP2.63□□□□□ -1.99
VPS35-205ENST00000563984 MMP24-AS1A0A0U1RRL7 71 aa2.62□□□□□ -1.99
VPS35-205ENST00000563984 FN1P02751 2386 aaKnown RBP2.62□□□□□ -1.99
VPS35-205ENST00000563984 DNHD1Q96M86 4753 aa2.62□□□□□ -1.99
VPS35-205ENST00000563984 A8MTW9 85 aa2.61□□□□□ -1.99
VPS35-205ENST00000563984 UBE2DNLQ8IWF7 75 aa2.61□□□□□ -1.99
VPS35-205ENST00000563984 CELSR1Q9NYQ6 3014 aa2.6□□□□□ -1.99
VPS35-205ENST00000563984 APCP25054 2843 aa2.6□□□□□ -1.99
VPS35-205ENST00000563984 IGFL1Q6UW32 110 aa2.6□□□□□ -1.99
VPS35-205ENST00000563984 LCE3DQ9BYE3 92 aa2.6□□□□□ -1.99
VPS35-205ENST00000563984 CCDC168Q8NDH2 2452 aa2.6□□□□□ -1.99
VPS35-205ENST00000563984 SPINK13Q1W4C9 94 aa2.59□□□□□ -1.99
VPS35-205ENST00000563984 DEFB133Q30KQ1 61 aa2.59□□□□□ -1.99
VPS35-205ENST00000563984 H1FX-AS1Q4G0G2 97 aa2.59□□□□□ -1.99
VPS35-205ENST00000563984 Q6ZSA8 131 aa2.59□□□□□ -1.99
VPS35-205ENST00000563984 HIVEP3Q5T1R4 2406 aa2.59□□□□□ -2
VPS35-205ENST00000563984 KLK9Q2XQG4 91 aa2.58□□□□□ -2
VPS35-205ENST00000563984 PP632Q6XCG6 107 aa2.58□□□□□ -2
VPS35-205ENST00000563984 U3KQA8 63 aa2.58□□□□□ -2
VPS35-205ENST00000563984 CSMD2Q7Z408 3487 aa2.58□□□□□ -2
VPS35-205ENST00000563984 ATRQ13535 2644 aa2.57□□□□□ -2
VPS35-205ENST00000563984 SMR3AQ99954 134 aa2.57□□□□□ -2
VPS35-205ENST00000563984 CSPG4Q6UVK1 2322 aa2.57□□□□□ -2
VPS35-205ENST00000563984 COL6A5A8TX70 2615 aa2.56□□□□□ -2
VPS35-205ENST00000563984 FBN1P35555 2871 aaKnown RBP2.56□□□□□ -2
VPS35-205ENST00000563984 BSNQ9UPA5 3926 aa2.56□□□□□ -2
VPS35-205ENST00000563984 ALMS1Q8TCU4 4167 aa2.56□□□□□ -2
VPS35-205ENST00000563984 JMJD1CQ15652 2540 aa2.56□□□□□ -2
VPS35-205ENST00000563984 RPL37P61927 97 aaKnown RBP2.55□□□□□ -2
VPS35-205ENST00000563984 DEFB105AQ8NG35 78 aa2.55□□□□□ -2
VPS35-205ENST00000563984 TACC2O95359 2948 aa2.55□□□□□ -2
VPS35-205ENST00000563984 STAB1Q9NY15 2570 aa2.54□□□□□ -2
VPS35-205ENST00000563984 APELAP0DMC3 54 aa2.54□□□□□ -2
VPS35-205ENST00000563984 KRTAP5-7Q6L8G8 165 aa2.54□□□□□ -2
VPS35-205ENST00000563984 CLPSL2Q6UWE3 100 aa2.54□□□□□ -2
VPS35-205ENST00000563984 PRRC2CQ9Y520 2896 aaKnown RBP2.53□□□□□ -2
VPS35-205ENST00000563984 MAP1AP78559 2803 aaPredicted RBP2.53□□□□□ -2
VPS35-205ENST00000563984 DEFB130BP0DP73 79 aa2.53□□□□□ -2
VPS35-205ENST00000563984 DEFB130AP0DP74 79 aa2.53□□□□□ -2
VPS35-205ENST00000563984 ACANP16112 2415 aa2.53□□□□□ -2
VPS35-205ENST00000563984 ABCA1O95477 2261 aa2.53□□□□□ -2
VPS35-205ENST00000563984 PKDREJQ9NTG1 2253 aa2.52□□□□□ -2.01
VPS35-205ENST00000563984 NOTCH1P46531 2555 aa2.52□□□□□ -2.01
VPS35-205ENST00000563984 H3BUA1 57 aa2.52□□□□□ -2.01
VPS35-205ENST00000563984 LYNX1P0DP58 116 aa2.52□□□□□ -2.01
VPS35-205ENST00000563984 C10orf95Q9H7T3 257 aa2.51□□□□□ -2.01
VPS35-205ENST00000563984 PKD1L1Q8TDX9 2849 aa2.51□□□□□ -2.01
VPS35-205ENST00000563984 AKAP9Q99996 3911 aa2.51□□□□□ -2.01
VPS35-205ENST00000563984 CNTRLQ7Z7A1 2325 aa2.51□□□□□ -2.01
VPS35-205ENST00000563984 DCHS2Q6V1P9 2916 aa2.49□□□□□ -2.01
VPS35-205ENST00000563984 TLN2Q9Y4G6 2542 aa2.48□□□□□ -2.01
VPS35-205ENST00000563984 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP2.47□□□□□ -2.011e-8■■□□□ 13.8
VPS35-205ENST00000563984 LELP1Q5T871 98 aa2.47□□□□□ -2.01
VPS35-205ENST00000563984 BRD3OSQ6XYD6 125 aa2.47□□□□□ -2.01
VPS35-205ENST00000563984 FLNAP21333 2647 aaKnown RBP2.47□□□□□ -2.01
VPS35-205ENST00000563984 HIVEP2P31629 2446 aa2.47□□□□□ -2.01
VPS35-205ENST00000563984 ZNF469Q96JG9 3925 aaPredicted RBP2.47□□□□□ -2.01
VPS35-205ENST00000563984 MXRA5Q9NR99 2828 aa2.46□□□□□ -2.01
VPS35-205ENST00000563984 TGP01266 2768 aa2.46□□□□□ -2.02
VPS35-205ENST00000563984 NBEAL2Q6ZNJ1 2754 aa2.46□□□□□ -2.02
VPS35-205ENST00000563984 UNQ6190/PRO20217Q6UXQ8 127 aa2.46□□□□□ -2.02
VPS35-205ENST00000563984 PRLHP81277 87 aa2.45□□□□□ -2.02
VPS35-205ENST00000563984 NSD1Q96L73 2696 aaPredicted RBP2.45□□□□□ -2.02
VPS35-205ENST00000563984 K7EIL1 84 aa2.44□□□□□ -2.02
VPS35-205ENST00000563984 SPRR1AP35321 89 aa2.44□□□□□ -2.02
VPS35-205ENST00000563984 DEFB110Q30KQ9 67 aa2.44□□□□□ -2.02
VPS35-205ENST00000563984 KRTAP13-2Q52LG2 175 aa2.44□□□□□ -2.02
VPS35-205ENST00000563984 PLCE1Q9P212 2302 aa2.43□□□□□ -2.02
VPS35-205ENST00000563984 CUBNO60494 3623 aa2.43□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms