RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 TMEM223A0PJW6 202 aa1.99□□□□□ -2.09
VPS35-204ENST00000563884 ADIRFQ15847 76 aa1.99□□□□□ -2.09
VPS35-204ENST00000563884 SLC7A5P1Q8MH63 180 aa1.99□□□□□ -2.09
VPS35-204ENST00000563884 MT1XP80297 61 aa1.98□□□□□ -2.09
VPS35-204ENST00000563884 LCA10Q71F78 164 aa1.98□□□□□ -2.09
VPS35-204ENST00000563884 SMCO4Q9NRQ5 59 aa1.98□□□□□ -2.09
VPS35-204ENST00000563884 SPANXCQ9NY87 97 aa1.98□□□□□ -2.09
VPS35-204ENST00000563884 C9JQL5 133 aa1.97□□□□□ -2.09
VPS35-204ENST00000563884 OCIAD2Q56VL3 154 aa1.97□□□□□ -2.09
VPS35-204ENST00000563884 CSAG1Q6PB30 78 aa1.96□□□□□ -2.1
VPS35-204ENST00000563884 TEN1Q86WV5 123 aa1.96□□□□□ -2.1
VPS35-204ENST00000563884 BAGE3Q86Y29 109 aa1.96□□□□□ -2.1
VPS35-204ENST00000563884 PLAC4Q8WY50 150 aa1.96□□□□□ -2.1
VPS35-204ENST00000563884 NAT8Q9UHE5 227 aa1.96□□□□□ -2.1
VPS35-204ENST00000563884 LINC01546A6NGU7 62 aa1.95□□□□□ -2.1
VPS35-204ENST00000563884 C8orf87E5RJ46 101 aa1.95□□□□□ -2.1
VPS35-204ENST00000563884 IGKV4-1P06312 121 aa1.95□□□□□ -2.1
VPS35-204ENST00000563884 LYRM7Q5U5X0 104 aa1.95□□□□□ -2.1
VPS35-204ENST00000563884 Q5W150 140 aa1.95□□□□□ -2.1
VPS35-204ENST00000563884 A0A087WSZ3 146 aa1.94□□□□□ -2.1
VPS35-204ENST00000563884 IGHV6-1A0A0B4J1U7 121 aa1.94□□□□□ -2.1
VPS35-204ENST00000563884 LEPROTO15243 131 aa1.94□□□□□ -2.1
VPS35-204ENST00000563884 NPC2P61916 151 aa1.94□□□□□ -2.1
VPS35-204ENST00000563884 PPDPFLQ8WWR9 84 aa1.94□□□□□ -2.1
VPS35-204ENST00000563884 CYSTM1Q9H1C7 97 aa1.94□□□□□ -2.1
VPS35-204ENST00000563884 PDE6GP18545 87 aa1.93□□□□□ -2.1
VPS35-204ENST00000563884 TCTE3Q8IZS6 198 aa1.93□□□□□ -2.1
VPS35-204ENST00000563884 SNHG12Q9BXW3 62 aa1.92□□□□□ -2.1
VPS35-204ENST00000563884 BATF3Q9NR55 127 aa1.92□□□□□ -2.1
VPS35-204ENST00000563884 TRAV12-1A0A0B4J245 112 aa1.91□□□□□ -2.1
VPS35-204ENST00000563884 IGKV3D-7A0A0C4DH55 119 aa1.91□□□□□ -2.1
VPS35-204ENST00000563884 SRP19P09132 144 aaKnown RBP1.91□□□□□ -2.1
VPS35-204ENST00000563884 IFITM3Q01628 133 aa1.91□□□□□ -2.1
VPS35-204ENST00000563884 KRTAP19-3Q7Z4W3 81 aa1.91□□□□□ -2.1
VPS35-204ENST00000563884 RAB37Q96AX2 223 aa1.91□□□□□ -2.1
VPS35-204ENST00000563884 S4R3F8 94 aa1.91□□□□□ -2.1
VPS35-204ENST00000563884 J3QQQ9 107 aa1.9□□□□□ -2.11
VPS35-204ENST00000563884 K7EQZ3 153 aa1.9□□□□□ -2.11
VPS35-204ENST00000563884 VAMP3Q15836 100 aa1.9□□□□□ -2.11
VPS35-204ENST00000563884 Q6ZQY7 126 aa1.9□□□□□ -2.11
VPS35-204ENST00000563884 A8MUN3 132 aa1.89□□□□□ -2.11
VPS35-204ENST00000563884 H3BUT2 72 aa1.89□□□□□ -2.11
VPS35-204ENST00000563884 SLC51BQ86UW2 128 aa1.89□□□□□ -2.11
VPS35-204ENST00000563884 LINC00308Q8TCZ7 52 aa1.89□□□□□ -2.11
VPS35-204ENST00000563884 COPS9Q8WXC6 57 aa1.89□□□□□ -2.11
VPS35-204ENST00000563884 A0A1B0GVX0 72 aa1.88□□□□□ -2.11
VPS35-204ENST00000563884 hADV29S1A0JD25 119 aa1.88□□□□□ -2.11
VPS35-204ENST00000563884 SMLR1H3BR10 107 aa1.88□□□□□ -2.11
VPS35-204ENST00000563884 TSPEAR-AS2P59090 65 aa1.88□□□□□ -2.11
VPS35-204ENST00000563884 KRTAP20-2Q3LI61 65 aa1.88□□□□□ -2.11
VPS35-204ENST00000563884 H0YAA0 97 aa1.87□□□□□ -2.11
VPS35-204ENST00000563884 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.87□□□□□ -2.11
VPS35-204ENST00000563884 A6NDN8 102 aa1.86□□□□□ -2.11
VPS35-204ENST00000563884 H0Y8G0 127 aa1.86□□□□□ -2.11
VPS35-204ENST00000563884 MT-ND4LP03901 98 aa1.86□□□□□ -2.11
VPS35-204ENST00000563884 C7orf65Q6ZTY9 151 aa1.86□□□□□ -2.11
VPS35-204ENST00000563884 TIMM17BO60830 172 aa1.85□□□□□ -2.11
VPS35-204ENST00000563884 PLNP26678 52 aa1.85□□□□□ -2.11
VPS35-204ENST00000563884 FABP9Q0Z7S8 132 aa1.85□□□□□ -2.11
VPS35-204ENST00000563884 C12orf57Q99622 126 aa1.85□□□□□ -2.11
VPS35-204ENST00000563884 LINC00614P0C842 121 aa1.84□□□□□ -2.11
VPS35-204ENST00000563884 LINC00575Q6W349 94 aa1.84□□□□□ -2.11
VPS35-204ENST00000563884 IFI27L1Q96BM0 104 aa1.84□□□□□ -2.11
VPS35-204ENST00000563884 MT1GP13640 62 aa1.83□□□□□ -2.12
VPS35-204ENST00000563884 PEA15Q15121 130 aa1.83□□□□□ -2.12
VPS35-204ENST00000563884 COX19Q49B96 90 aa1.83□□□□□ -2.12
VPS35-204ENST00000563884 COA6Q5JTJ3 125 aaKnown RBP1.83□□□□□ -2.12
VPS35-204ENST00000563884 C2orf91Q6ZV80 131 aa1.83□□□□□ -2.12
VPS35-204ENST00000563884 SEC11CQ9BY50 192 aa1.83□□□□□ -2.12
VPS35-204ENST00000563884 TRAPPC1Q9Y5R8 145 aa1.83□□□□□ -2.12
VPS35-204ENST00000563884 NDUFB1O75438 58 aa1.82□□□□□ -2.12
VPS35-204ENST00000563884 SNCGO76070 127 aa1.82□□□□□ -2.12
VPS35-204ENST00000563884 TRGC2P03986 189 aa1.82□□□□□ -2.12
VPS35-204ENST00000563884 KRTAP12-4P60329 112 aa1.82□□□□□ -2.12
VPS35-204ENST00000563884 PMCHL1Q16048 86 aa1.82□□□□□ -2.12
VPS35-204ENST00000563884 LINC00472Q9H8W2 130 aa1.82□□□□□ -2.12
VPS35-204ENST00000563884 TRBV7-4A0A0J9YYF1 115 aa1.81□□□□□ -2.12
VPS35-204ENST00000563884 J3KT08 172 aa1.81□□□□□ -2.12
VPS35-204ENST00000563884 SMIM11BQ8TCY0 68 aa1.81□□□□□ -2.12
VPS35-204ENST00000563884 MT1EP04732 61 aa1.8□□□□□ -2.12
VPS35-204ENST00000563884 C4orf26Q17RF5 130 aa1.8□□□□□ -2.12
VPS35-204ENST00000563884 H3BMG7 143 aa1.79□□□□□ -2.12
VPS35-204ENST00000563884 DPM2O94777 84 aa1.79□□□□□ -2.12
VPS35-204ENST00000563884 IFITM1P13164 125 aa1.78□□□□□ -2.12
VPS35-204ENST00000563884 S100PP25815 95 aa1.78□□□□□ -2.12
VPS35-204ENST00000563884 UQCC3Q6UW78 93 aa1.78□□□□□ -2.12
VPS35-204ENST00000563884 C18orf32Q8TCD1 76 aa1.78□□□□□ -2.12
VPS35-204ENST00000563884 PCP4L1A6NKN8 68 aa1.77□□□□□ -2.13
VPS35-204ENST00000563884 IGKCP01834 107 aa1.77□□□□□ -2.13
VPS35-204ENST00000563884 TRACP01848 142 aa1.77□□□□□ -2.13
VPS35-204ENST00000563884 SEC61GP60059 68 aa1.77□□□□□ -2.13
VPS35-204ENST00000563884 KRTAP19-7Q3SYF9 63 aa1.77□□□□□ -2.13
VPS35-204ENST00000563884 BVES-AS1Q5T3Y7 98 aa1.77□□□□□ -2.13
VPS35-204ENST00000563884 HSPB8Q9UJY1 196 aa1.77□□□□□ -2.13
VPS35-204ENST00000563884 KRTAP12-3P60328 96 aa1.76□□□□□ -2.13
VPS35-204ENST00000563884 MT1MQ8N339 61 aa1.76□□□□□ -2.13
VPS35-204ENST00000563884 CHCHD1Q96BP2 118 aaKnown RBP1.76□□□□□ -2.13
VPS35-204ENST00000563884 C8orf17Q9NRJ1 99 aa1.76□□□□□ -2.13
VPS35-204ENST00000563884 hDV103S1A0JD37 113 aa1.75□□□□□ -2.13
VPS35-204ENST00000563884 ANKRD29Q8N6D5 301 aa1.75□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms