RNA–Protein interactions for RNA: ENST00000563645.1

GDE1-202, Transcript of glycerophosphodiester phosphodiesterase 1, humanhuman

TSL 2

Gene GDE1, Length 769 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GDE1-202ENST00000563645 BAHCC1Q9P281 2608 aa1.43□□□□□ -2.18
GDE1-202ENST00000563645 BOD1L1Q8NFC6 3051 aa1.43□□□□□ -2.18
GDE1-202ENST00000563645 GOLGB1Q14789 3259 aaKnown RBP1.43□□□□□ -2.18
GDE1-202ENST00000563645 COL6A5A8TX70 2615 aa1.43□□□□□ -2.18
GDE1-202ENST00000563645 CACNA1HO95180 2353 aa1.43□□□□□ -2.18
GDE1-202ENST00000563645 DNAH2Q9P225 4427 aa1.43□□□□□ -2.18
GDE1-202ENST00000563645 DMXL1Q9Y485 3027 aa1.42□□□□□ -2.18
GDE1-202ENST00000563645 SPART-AS1P0CW21 52 aa1.42□□□□□ -2.18
GDE1-202ENST00000563645 MAP1BP46821 2468 aaKnown RBP1.41□□□□□ -2.18
GDE1-202ENST00000563645 ITPR1Q14643 2758 aa1.41□□□□□ -2.18
GDE1-202ENST00000563645 HTN3P15516 51 aa1.41□□□□□ -2.18
GDE1-202ENST00000563645 KRTAP4-1Q9BYQ7 146 aa1.41□□□□□ -2.18
GDE1-202ENST00000563645 ZFHX4Q86UP3 3567 aa1.41□□□□□ -2.18
GDE1-202ENST00000563645 SPTBN5Q9NRC6 3674 aaKnown RBP1.41□□□□□ -2.18
GDE1-202ENST00000563645 CCDC168Q8NDH2 2452 aa1.4□□□□□ -2.19
GDE1-202ENST00000563645 VWFP04275 2813 aa1.4□□□□□ -2.19
GDE1-202ENST00000563645 CRYBG3Q68DQ2 2970 aa1.4□□□□□ -2.19
GDE1-202ENST00000563645 FAM186AA6NE01 2351 aa1.4□□□□□ -2.19
GDE1-202ENST00000563645 PCNTO95613 3336 aa1.4□□□□□ -2.19
GDE1-202ENST00000563645 F8P00451 2351 aa1.4□□□□□ -2.19
GDE1-202ENST00000563645 DNAH10Q8IVF4 4471 aa1.39□□□□□ -2.19
GDE1-202ENST00000563645 ABCA2Q9BZC7 2435 aa1.39□□□□□ -2.19
GDE1-202ENST00000563645 DMBT1Q9UGM3 2413 aaPredicted RBP1.39□□□□□ -2.19
GDE1-202ENST00000563645 HTTP42858 3142 aa1.39□□□□□ -2.19
GDE1-202ENST00000563645 SZT2Q5T011 3432 aa1.38□□□□□ -2.19
GDE1-202ENST00000563645 TRIOO75962 3097 aa1.38□□□□□ -2.19
GDE1-202ENST00000563645 DEFB4AO15263 64 aa1.38□□□□□ -2.19
GDE1-202ENST00000563645 KALRNO60229 2985 aa1.38□□□□□ -2.19
GDE1-202ENST00000563645 DCHS1Q96JQ0 3298 aa1.38□□□□□ -2.19
GDE1-202ENST00000563645 SRRM2Q9UQ35 2752 aaKnown RBP1.37□□□□□ -2.19
GDE1-202ENST00000563645 FCGBPQ9Y6R7 5405 aaPredicted RBP1.37□□□□□ -2.19
GDE1-202ENST00000563645 COL12A1Q99715 3063 aa1.37□□□□□ -2.19
GDE1-202ENST00000563645 DNAH1Q9P2D7 4330 aa1.37□□□□□ -2.19
GDE1-202ENST00000563645 DMDP11532 3685 aa1.37□□□□□ -2.19
GDE1-202ENST00000563645 HIVEP3Q5T1R4 2406 aa1.37□□□□□ -2.19
GDE1-202ENST00000563645 UTRNP46939 3433 aa1.37□□□□□ -2.19
GDE1-202ENST00000563645 DNAH3Q8TD57 4116 aa1.36□□□□□ -2.19
GDE1-202ENST00000563645 DNAH7Q8WXX0 4024 aa1.36□□□□□ -2.19
GDE1-202ENST00000563645 CHD9Q3L8U1 2897 aa1.36□□□□□ -2.19
GDE1-202ENST00000563645 SPEGQ15772 3267 aa1.35□□□□□ -2.19
GDE1-202ENST00000563645 DYNC2H1Q8NCM8 4307 aaKnown RBP1.35□□□□□ -2.19
GDE1-202ENST00000563645 SPG11Q96JI7 2443 aa1.35□□□□□ -2.19
GDE1-202ENST00000563645 PRKDCP78527 4128 aaKnown RBP1.35□□□□□ -2.19
GDE1-202ENST00000563645 NAV2Q8IVL1 2488 aa1.35□□□□□ -2.19
GDE1-202ENST00000563645 NBASA2RRP1 2371 aa1.35□□□□□ -2.19
GDE1-202ENST00000563645 PKD1L2Q7Z442 2459 aa1.34□□□□□ -2.19
GDE1-202ENST00000563645 TTC28Q96AY4 2481 aa1.34□□□□□ -2.19
GDE1-202ENST00000563645 BSNQ9UPA5 3926 aa1.34□□□□□ -2.19
GDE1-202ENST00000563645 DEFB135Q30KP9 77 aa1.34□□□□□ -2.19
GDE1-202ENST00000563645 MAP1AP78559 2803 aaPredicted RBP1.34□□□□□ -2.2
GDE1-202ENST00000563645 FAT3Q8TDW7 4589 aa1.33□□□□□ -2.2
GDE1-202ENST00000563645 HUWE1Q7Z6Z7 4374 aaKnown RBP1.33□□□□□ -2.2
GDE1-202ENST00000563645 TRANK1O15050 2925 aa1.33□□□□□ -2.2
GDE1-202ENST00000563645 AKAP13Q12802 2813 aa1.33□□□□□ -2.2
GDE1-202ENST00000563645 DNAH9Q9NYC9 4486 aa1.33□□□□□ -2.2
GDE1-202ENST00000563645 J3QKU1 62 aa1.33□□□□□ -2.2
GDE1-202ENST00000563645 APOBP04114 4563 aaKnown RBP1.33□□□□□ -2.2
GDE1-202ENST00000563645 RP1L1Q8IWN7 2480 aaPredicted RBP1.33□□□□□ -2.2
GDE1-202ENST00000563645 CMYA5Q8N3K9 4069 aa1.33□□□□□ -2.2
GDE1-202ENST00000563645 LAMA2P24043 3122 aaKnown RBP1.33□□□□□ -2.2
GDE1-202ENST00000563645 LRBAP50851 2863 aa1.33□□□□□ -2.2
GDE1-202ENST00000563645 PTPN13Q12923 2485 aa1.32□□□□□ -2.2
GDE1-202ENST00000563645 MEGF8Q7Z7M0 2845 aa1.32□□□□□ -2.2
GDE1-202ENST00000563645 LYSTQ99698 3801 aa1.32□□□□□ -2.2
GDE1-202ENST00000563645 UNC80Q8N2C7 3258 aa1.32□□□□□ -2.2
GDE1-202ENST00000563645 FRYQ5TBA9 3013 aa1.32□□□□□ -2.2
GDE1-202ENST00000563645 HMCN1Q96RW7 5635 aa1.32□□□□□ -2.2
GDE1-202ENST00000563645 ATMQ13315 3056 aa1.32□□□□□ -2.2
GDE1-202ENST00000563645 DNAH12Q6ZR08 3092 aa1.32□□□□□ -2.2
GDE1-202ENST00000563645 ANK2Q01484 3957 aa1.32□□□□□ -2.2
GDE1-202ENST00000563645 CREBBPQ92793 2442 aa1.31□□□□□ -2.2
GDE1-202ENST00000563645 FBN3Q75N90 2809 aa1.31□□□□□ -2.2
GDE1-202ENST00000563645 TNP1P09430 55 aa1.31□□□□□ -2.2
GDE1-202ENST00000563645 DNAH5Q8TE73 4624 aa1.31□□□□□ -2.2
GDE1-202ENST00000563645 ANK3Q12955 4377 aaKnown RBP1.31□□□□□ -2.2
GDE1-202ENST00000563645 CEP290O15078 2479 aa1.31□□□□□ -2.2
GDE1-202ENST00000563645 NCOR2Q9Y618 2525 aa1.31□□□□□ -2.2
GDE1-202ENST00000563645 DCHS2Q6V1P9 2916 aa1.31□□□□□ -2.2
GDE1-202ENST00000563645 KMT2AQ03164 3969 aa1.31□□□□□ -2.2
GDE1-202ENST00000563645 TRRAPQ9Y4A5 3859 aa1.3□□□□□ -2.2
GDE1-202ENST00000563645 DNAH17Q9UFH2 4485 aa1.3□□□□□ -2.2
GDE1-202ENST00000563645 NF1P21359 2839 aa1.3□□□□□ -2.2
GDE1-202ENST00000563645 SETD2Q9BYW2 2564 aaPredicted RBP1.3□□□□□ -2.2
GDE1-202ENST00000563645 LAMA1P25391 3075 aa1.29□□□□□ -2.2
GDE1-202ENST00000563645 VPS13BQ7Z7G8 4022 aa1.29□□□□□ -2.2
GDE1-202ENST00000563645 RELNP78509 3460 aa1.29□□□□□ -2.2
GDE1-202ENST00000563645 PKD1P98161 4303 aa1.29□□□□□ -2.2
GDE1-202ENST00000563645 ABCA12Q86UK0 2595 aa1.29□□□□□ -2.2
GDE1-202ENST00000563645 SPENQ96T58 3664 aaKnown RBP1.28□□□□□ -2.2
GDE1-202ENST00000563645 EP400Q96L91 3159 aa1.28□□□□□ -2.2
GDE1-202ENST00000563645 CSMD1Q96PZ7 3565 aa1.28□□□□□ -2.2
GDE1-202ENST00000563645 RPS29P62273 56 aaKnown RBP1.28□□□□□ -2.2
GDE1-202ENST00000563645 SMR3AQ99954 134 aa1.28□□□□□ -2.2
GDE1-202ENST00000563645 ZNF469Q96JG9 3925 aaPredicted RBP1.28□□□□□ -2.2
GDE1-202ENST00000563645 PLECQ15149 4684 aaKnown RBP1.28□□□□□ -2.2
GDE1-202ENST00000563645 SONP18583 2426 aaKnown RBP1.28□□□□□ -2.2
GDE1-202ENST00000563645 HSPG2P98160 4391 aa1.28□□□□□ -2.21
GDE1-202ENST00000563645 LAMA5O15230 3695 aa1.27□□□□□ -2.21
GDE1-202ENST00000563645 CELSR3Q9NYQ7 3312 aa1.27□□□□□ -2.21
GDE1-202ENST00000563645 COL7A1Q02388 2944 aa1.27□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms