RNA–Protein interactions for RNA: ENST00000563219.1

SHCBP1-202, Transcript of SHC binding and spindle associated 1, humanhuman

TSL 3

Gene SHCBP1, Length 485 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHCBP1-202ENST00000563219 TNRC18O15417 2968 aaPredicted RBP0.59□□□□□ -2.31
SHCBP1-202ENST00000563219 SPTBN2O15020 2390 aa0.59□□□□□ -2.31
SHCBP1-202ENST00000563219 SACSQ9NZJ4 4579 aa0.59□□□□□ -2.32
SHCBP1-202ENST00000563219 ITPR3Q14573 2671 aa0.58□□□□□ -2.32
SHCBP1-202ENST00000563219 DEFB124Q8NES8 71 aa0.58□□□□□ -2.32
SHCBP1-202ENST00000563219 SMR3AQ99954 134 aa0.58□□□□□ -2.32
SHCBP1-202ENST00000563219 F8P00451 2351 aa0.58□□□□□ -2.32
SHCBP1-202ENST00000563219 POLQO75417 2590 aa0.58□□□□□ -2.32
SHCBP1-202ENST00000563219 ABCA12Q86UK0 2595 aa0.58□□□□□ -2.32
SHCBP1-202ENST00000563219 TTC28Q96AY4 2481 aa0.58□□□□□ -2.32
SHCBP1-202ENST00000563219 SPTBN1Q01082 2364 aaKnown RBP0.57□□□□□ -2.32
SHCBP1-202ENST00000563219 SPENQ96T58 3664 aaKnown RBP0.57□□□□□ -2.32
SHCBP1-202ENST00000563219 WDR87Q6ZQQ6 2873 aa0.57□□□□□ -2.32
SHCBP1-202ENST00000563219 ZFHX4Q86UP3 3567 aa0.57□□□□□ -2.32
SHCBP1-202ENST00000563219 NBPF19A0A087WUL8 3843 aa0.57□□□□□ -2.32
SHCBP1-202ENST00000563219 A0A096LPF7 62 aa0.57□□□□□ -2.32
SHCBP1-202ENST00000563219 DNAH11Q96DT5 4516 aa0.57□□□□□ -2.32
SHCBP1-202ENST00000563219 WNK1Q9H4A3 2382 aa0.57□□□□□ -2.32
SHCBP1-202ENST00000563219 AHNAKQ09666 5890 aaKnown RBP0.57□□□□□ -2.32
SHCBP1-202ENST00000563219 FRAS1Q86XX4 4008 aa0.56□□□□□ -2.32
SHCBP1-202ENST00000563219 DEFB133Q30KQ1 61 aa0.56□□□□□ -2.32
SHCBP1-202ENST00000563219 DCHS2Q6V1P9 2916 aa0.56□□□□□ -2.32
SHCBP1-202ENST00000563219 EP300Q09472 2414 aaPredicted RBP0.56□□□□□ -2.32
SHCBP1-202ENST00000563219 CEP290O15078 2479 aa0.56□□□□□ -2.32
SHCBP1-202ENST00000563219 NF1P21359 2839 aa0.56□□□□□ -2.32
SHCBP1-202ENST00000563219 SPTBN4Q9H254 2564 aa0.55□□□□□ -2.32
SHCBP1-202ENST00000563219 CSMD3Q7Z407 3707 aa0.55□□□□□ -2.32
SHCBP1-202ENST00000563219 LYSTQ99698 3801 aa0.55□□□□□ -2.32
SHCBP1-202ENST00000563219 KRTAP2-3P0C7H8 128 aa0.55□□□□□ -2.32
SHCBP1-202ENST00000563219 KRTAP2-4Q9BYR9 128 aa0.55□□□□□ -2.32
SHCBP1-202ENST00000563219 KRTAP2-1Q9BYU5 128 aa0.55□□□□□ -2.32
SHCBP1-202ENST00000563219 CACNA1HO95180 2353 aa0.55□□□□□ -2.32
SHCBP1-202ENST00000563219 CFAP54Q96N23 3096 aa0.55□□□□□ -2.32
SHCBP1-202ENST00000563219 PKD1L2Q7Z442 2459 aa0.55□□□□□ -2.32
SHCBP1-202ENST00000563219 ATRQ13535 2644 aa0.54□□□□□ -2.32
SHCBP1-202ENST00000563219 RANBP2P49792 3224 aaKnown RBP0.54□□□□□ -2.32
SHCBP1-202ENST00000563219 HECTD1Q9ULT8 2610 aa0.54□□□□□ -2.32
SHCBP1-202ENST00000563219 GVINP1Q7Z2Y8 2422 aa0.54□□□□□ -2.32
SHCBP1-202ENST00000563219 DNAH8Q96JB1 4490 aa0.54□□□□□ -2.32
SHCBP1-202ENST00000563219 BDP1A6H8Y1 2624 aa0.53□□□□□ -2.32
SHCBP1-202ENST00000563219 AHNAK2Q8IVF2 5795 aa0.53□□□□□ -2.32
SHCBP1-202ENST00000563219 COL7A1Q02388 2944 aa0.53□□□□□ -2.32
SHCBP1-202ENST00000563219 CD52P31358 61 aa0.53□□□□□ -2.32
SHCBP1-202ENST00000563219 LINC01556Q5JQF7 62 aa0.53□□□□□ -2.32
SHCBP1-202ENST00000563219 TACC2O95359 2948 aa0.53□□□□□ -2.32
SHCBP1-202ENST00000563219 VPS13BQ7Z7G8 4022 aa0.53□□□□□ -2.33
SHCBP1-202ENST00000563219 SPTA1P02549 2419 aa0.53□□□□□ -2.33
SHCBP1-202ENST00000563219 USP24Q9UPU5 2620 aa0.52□□□□□ -2.33
SHCBP1-202ENST00000563219 PKD1L1Q8TDX9 2849 aa0.52□□□□□ -2.33
SHCBP1-202ENST00000563219 KALRNO60229 2985 aa0.52□□□□□ -2.33
SHCBP1-202ENST00000563219 FRYLO94915 3013 aa0.52□□□□□ -2.33
SHCBP1-202ENST00000563219 DMXL1Q9Y485 3027 aa0.52□□□□□ -2.33
SHCBP1-202ENST00000563219 COL6A3P12111 3177 aa0.52□□□□□ -2.33
SHCBP1-202ENST00000563219 CCDC168Q8NDH2 2452 aa0.52□□□□□ -2.33
SHCBP1-202ENST00000563219 PRM1P04553 51 aa0.52□□□□□ -2.33
SHCBP1-202ENST00000563219 GCN1Q92616 2671 aaKnown RBP0.52□□□□□ -2.33
SHCBP1-202ENST00000563219 FLNCQ14315 2725 aa0.52□□□□□ -2.33
SHCBP1-202ENST00000563219 BSNQ9UPA5 3926 aa0.52□□□□□ -2.33
SHCBP1-202ENST00000563219 ANK2Q01484 3957 aa0.52□□□□□ -2.33
SHCBP1-202ENST00000563219 PRKDCP78527 4128 aaKnown RBP0.51□□□□□ -2.33
SHCBP1-202ENST00000563219 DYNC2H1Q8NCM8 4307 aaKnown RBP0.51□□□□□ -2.33
SHCBP1-202ENST00000563219 LRBAP50851 2863 aa0.51□□□□□ -2.33
SHCBP1-202ENST00000563219 RPS29P62273 56 aaKnown RBP0.51□□□□□ -2.33
SHCBP1-202ENST00000563219 RELNP78509 3460 aa0.51□□□□□ -2.33
SHCBP1-202ENST00000563219 KMT2AQ03164 3969 aa0.51□□□□□ -2.33
SHCBP1-202ENST00000563219 NBEAQ8NFP9 2946 aa0.51□□□□□ -2.33
SHCBP1-202ENST00000563219 AKAP9Q99996 3911 aa0.51□□□□□ -2.33
SHCBP1-202ENST00000563219 ZZEF1O43149 2961 aa0.51□□□□□ -2.33
SHCBP1-202ENST00000563219 USP9YO00507 2555 aaPredicted RBP0.51□□□□□ -2.33
SHCBP1-202ENST00000563219 ACACAQ13085 2346 aa0.5□□□□□ -2.33
SHCBP1-202ENST00000563219 CELSR3Q9NYQ7 3312 aa0.5□□□□□ -2.33
SHCBP1-202ENST00000563219 NIPBLQ6KC79 2804 aaeCLIP0.5□□□□□ -2.33
SHCBP1-202ENST00000563219 KRTAP8-1Q8IUC2 63 aa0.5□□□□□ -2.33
SHCBP1-202ENST00000563219 NAV2Q8IVL1 2488 aa0.5□□□□□ -2.33
SHCBP1-202ENST00000563219 SMG1Q96Q15 3661 aaKnown RBP0.5□□□□□ -2.33
SHCBP1-202ENST00000563219 FAT2Q9NYQ8 4349 aa0.5□□□□□ -2.33
SHCBP1-202ENST00000563219 HTN3P15516 51 aa0.49□□□□□ -2.33
SHCBP1-202ENST00000563219 DNAH12Q6ZR08 3092 aa0.49□□□□□ -2.33
SHCBP1-202ENST00000563219 COL12A1Q99715 3063 aa0.49□□□□□ -2.33
SHCBP1-202ENST00000563219 NCOR1O75376 2440 aa0.49□□□□□ -2.33
SHCBP1-202ENST00000563219 APC2O95996 2303 aa0.49□□□□□ -2.33
SHCBP1-202ENST00000563219 MXRA5Q9NR99 2828 aa0.49□□□□□ -2.33
SHCBP1-202ENST00000563219 ITPR1Q14643 2758 aa0.49□□□□□ -2.33
SHCBP1-202ENST00000563219 DNAH2Q9P225 4427 aa0.49□□□□□ -2.33
SHCBP1-202ENST00000563219 ANKRD11Q6UB99 2663 aaPredicted RBP0.49□□□□□ -2.33
SHCBP1-202ENST00000563219 PRUNE2Q8WUY3 3088 aa0.49□□□□□ -2.33
SHCBP1-202ENST00000563219 PKHD1L1Q86WI1 4243 aa0.48□□□□□ -2.33
SHCBP1-202ENST00000563219 SETD2Q9BYW2 2564 aaPredicted RBP0.48□□□□□ -2.33
SHCBP1-202ENST00000563219 CREBBPQ92793 2442 aa0.48□□□□□ -2.33
SHCBP1-202ENST00000563219 MAP1AP78559 2803 aaPredicted RBP0.48□□□□□ -2.33
SHCBP1-202ENST00000563219 C5orf42Q9H799 3197 aa0.48□□□□□ -2.33
SHCBP1-202ENST00000563219 CEP350Q5VT06 3117 aa0.48□□□□□ -2.33
SHCBP1-202ENST00000563219 BOD1L1Q8NFC6 3051 aa0.48□□□□□ -2.33
SHCBP1-202ENST00000563219 CACNA1AO00555 2505 aa0.47□□□□□ -2.33
SHCBP1-202ENST00000563219 ZANQ9Y493 2812 aa0.47□□□□□ -2.33
SHCBP1-202ENST00000563219 TRIOO75962 3097 aa0.47□□□□□ -2.33
SHCBP1-202ENST00000563219 SETXQ7Z333 2677 aaKnown RBP0.47□□□□□ -2.33
SHCBP1-202ENST00000563219 HRNRQ86YZ3 2850 aaPredicted RBP0.47□□□□□ -2.33
SHCBP1-202ENST00000563219 DMBT1Q9UGM3 2413 aaPredicted RBP0.47□□□□□ -2.33
SHCBP1-202ENST00000563219 DMXL2Q8TDJ6 3036 aa0.47□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms