RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 Q8N9P0 234 aaPredicted RBP7.84□□□□□ -1.15
CLN3-208ENST00000561505 TMEM238LA0A1B0GVL6 79 aa7.83□□□□□ -1.16
CLN3-208ENST00000561505 A6NJY4 79 aa7.83□□□□□ -1.16
CLN3-208ENST00000561505 FXYD2P54710 66 aa7.83□□□□□ -1.16
CLN3-208ENST00000561505 UBE2V1Q13404 147 aa7.82□□□□□ -1.16
CLN3-208ENST00000561505 DNAL4O96015 105 aa7.81□□□□□ -1.16
CLN3-208ENST00000561505 SPATA45Q537H7 98 aa7.81□□□□□ -1.16
CLN3-208ENST00000561505 PAM16Q9Y3D7 125 aa7.8□□□□□ -1.16
CLN3-208ENST00000561505 A0A1B0GV72 72 aa7.77□□□□□ -1.17
CLN3-208ENST00000561505 J3KT08 172 aa7.77□□□□□ -1.17
CLN3-208ENST00000561505 C21orf62-AS1Q17RA5 79 aa7.75□□□□□ -1.17
CLN3-208ENST00000561505 WFDC13Q8IUB5 93 aa7.74□□□□□ -1.17
CLN3-208ENST00000561505 VAMP8Q9BV40 100 aa7.74□□□□□ -1.17
CLN3-208ENST00000561505 COX6CP09669 75 aa7.72□□□□□ -1.17
CLN3-208ENST00000561505 RBM3P98179 157 aaKnown RBP7.72□□□□□ -1.17
CLN3-208ENST00000561505 Q6ZQT0 140 aa7.71□□□□□ -1.18
CLN3-208ENST00000561505 PSMB2P49721 201 aa7.7□□□□□ -1.18
CLN3-208ENST00000561505 K7ERJ3 54 aa7.68□□□□□ -1.18
CLN3-208ENST00000561505 DSCR8Q96T75 97 aa7.68□□□□□ -1.18
CLN3-208ENST00000561505 VPS25Q9BRG1 176 aa7.68□□□□□ -1.18
CLN3-208ENST00000561505 C8orf17Q9NRJ1 99 aa7.68□□□□□ -1.18
CLN3-208ENST00000561505 NDUFB1O75438 58 aa7.67□□□□□ -1.18
CLN3-208ENST00000561505 S100A1P23297 94 aa7.67□□□□□ -1.18
CLN3-208ENST00000561505 HSD52Q0P140 79 aa7.67□□□□□ -1.18
CLN3-208ENST00000561505 A0A1B0GW54 56 aa7.65□□□□□ -1.18
CLN3-208ENST00000561505 H1FX-AS1Q4G0G2 97 aa7.65□□□□□ -1.18
CLN3-208ENST00000561505 C9JAW5 83 aa7.64□□□□□ -1.19
CLN3-208ENST00000561505 IGKV3D-7A0A0C4DH55 119 aa7.63□□□□□ -1.19
CLN3-208ENST00000561505 Q6ZVQ6 151 aa7.61□□□□□ -1.19
CLN3-208ENST00000561505 BAALC-AS2P0C853 105 aa7.59□□□□□ -1.19
CLN3-208ENST00000561505 LYRM7Q5U5X0 104 aa7.58□□□□□ -1.2
CLN3-208ENST00000561505 PRR15Q8IV56 129 aa7.57□□□□□ -1.2
CLN3-208ENST00000561505 LOC110117498A0A087WWA1 95 aa7.56□□□□□ -1.2
CLN3-208ENST00000561505 TMEM254Q8TBM7 123 aa7.54□□□□□ -1.2
CLN3-208ENST00000561505 NEBP20929 6669 aa7.53□□□□□ -1.2
CLN3-208ENST00000561505 MMP24-AS1A0A0U1RRL7 71 aa7.53□□□□□ -1.2
CLN3-208ENST00000561505 JMJD7-PLA2G4BH0Y9G9 81 aa7.53□□□□□ -1.2
CLN3-208ENST00000561505 SCGB1C2P0DMR2 95 aa7.53□□□□□ -1.2
CLN3-208ENST00000561505 PYY3Q5JQD4 70 aa7.53□□□□□ -1.2
CLN3-208ENST00000561505 MRPL34Q9BQ48 92 aaKnown RBP7.53□□□□□ -1.2
CLN3-208ENST00000561505 PDE6GP18545 87 aa7.51□□□□□ -1.21
CLN3-208ENST00000561505 MT1BP07438 61 aa7.5□□□□□ -1.21
CLN3-208ENST00000561505 MUC12Q9UKN1 5478 aa7.5□□□□□ -1.21
CLN3-208ENST00000561505 UQCR10Q9UDW1 63 aa7.47□□□□□ -1.21
CLN3-208ENST00000561505 KRTAP19-8Q3LI54 63 aa7.46□□□□□ -1.22
CLN3-208ENST00000561505 A6NN06 94 aa7.45□□□□□ -1.22
CLN3-208ENST00000561505 hDV103S1A0JD37 113 aa7.44□□□□□ -1.22
CLN3-208ENST00000561505 Q5W150 140 aa7.44□□□□□ -1.22
CLN3-208ENST00000561505 KRTAP5-9P26371 169 aa7.43□□□□□ -1.22
CLN3-208ENST00000561505 NREPQ16612 68 aa7.43□□□□□ -1.22
CLN3-208ENST00000561505 SPRR2GQ9BYE4 73 aa7.43□□□□□ -1.22
CLN3-208ENST00000561505 ATXN8Q156A1 80 aa7.42□□□□□ -1.22
CLN3-208ENST00000561505 C7orf65Q6ZTY9 151 aa7.42□□□□□ -1.22
CLN3-208ENST00000561505 C14orf132Q9NPU4 83 aa7.41□□□□□ -1.22
CLN3-208ENST00000561505 IGKV2D-30A0A075B6S6 120 aa7.4□□□□□ -1.22
CLN3-208ENST00000561505 K7EQZ3 153 aa7.4□□□□□ -1.22
CLN3-208ENST00000561505 IGKV2-30P06310 120 aa7.4□□□□□ -1.22
CLN3-208ENST00000561505 KRTAP10-5P60370 271 aa7.4□□□□□ -1.22
CLN3-208ENST00000561505 KRTAP20-1Q3LI63 56 aa7.4□□□□□ -1.22
CLN3-208ENST00000561505 Q5VV11 94 aa7.38□□□□□ -1.23
CLN3-208ENST00000561505 NDUFS5O43920 106 aa7.36□□□□□ -1.23
CLN3-208ENST00000561505 C4orf26Q17RF5 130 aa7.35□□□□□ -1.23
CLN3-208ENST00000561505 KRTAP3-1Q9BYR8 98 aa7.34□□□□□ -1.23
CLN3-208ENST00000561505 KMT2DO14686 5537 aa7.32□□□□□ -1.24
CLN3-208ENST00000561505 C5orf47Q569G3 176 aa7.31□□□□□ -1.24
CLN3-208ENST00000561505 NAA38Q9BRA0 125 aaKnown RBP7.3□□□□□ -1.24
CLN3-208ENST00000561505 FAM236AA0A1B0GUQ0 79 aa7.29□□□□□ -1.24
CLN3-208ENST00000561505 FAM236BA0A1B0GV22 79 aa7.29□□□□□ -1.24
CLN3-208ENST00000561505 MDN1Q9NU22 5596 aa7.28□□□□□ -1.24
CLN3-208ENST00000561505 CSAG1Q6PB30 78 aa7.26□□□□□ -1.25
CLN3-208ENST00000561505 BPY2O14599 106 aa7.25□□□□□ -1.25
CLN3-208ENST00000561505 CXCL6P80162 114 aa7.25□□□□□ -1.25
CLN3-208ENST00000561505 HCG22E2RYF7 251 aa7.24□□□□□ -1.25
CLN3-208ENST00000561505 M0R143 59 aa7.24□□□□□ -1.25
CLN3-208ENST00000561505 CASC2Q6XLA1 102 aa7.24□□□□□ -1.25
CLN3-208ENST00000561505 S4R3F8 94 aa7.23□□□□□ -1.25
CLN3-208ENST00000561505 KLKP1Q107X0 134 aa7.22□□□□□ -1.25
CLN3-208ENST00000561505 LCA10Q71F78 164 aa7.22□□□□□ -1.25
CLN3-208ENST00000561505 H3BT86 120 aa7.19□□□□□ -1.26
CLN3-208ENST00000561505 Q8N9L7 120 aa7.19□□□□□ -1.26
CLN3-208ENST00000561505 KRTAP2-3P0C7H8 128 aa7.17□□□□□ -1.26
CLN3-208ENST00000561505 SMCPP49901 116 aaPredicted RBP7.17□□□□□ -1.26
CLN3-208ENST00000561505 C1orf64Q8NEQ6 169 aa7.17□□□□□ -1.26
CLN3-208ENST00000561505 KRTAP3-3Q9BYR6 98 aa7.17□□□□□ -1.26
CLN3-208ENST00000561505 KRTAP2-4Q9BYR9 128 aa7.17□□□□□ -1.26
CLN3-208ENST00000561505 CRIPTQ9P021 101 aa7.13□□□□□ -1.27
CLN3-208ENST00000561505 C9orf118A6NHY6 69 aa7.03□□□□□ -1.28
CLN3-208ENST00000561505 TMA7Q9Y2S6 64 aaKnown RBP7.02□□□□□ -1.29
CLN3-208ENST00000561505 A0A1W2PPM0 123 aa7.01□□□□□ -1.29
CLN3-208ENST00000561505 IMUPQ9GZP8 106 aa7.01□□□□□ -1.29
CLN3-208ENST00000561505 TP53AIP1Q9HCN2 124 aa7.01□□□□□ -1.29
CLN3-208ENST00000561505 TSTD3H0UI37 97 aa7□□□□□ -1.29
CLN3-208ENST00000561505 TAX1BP3O14907 124 aa6.99□□□□□ -1.29
CLN3-208ENST00000561505 A0A087WVE0 104 aa6.98□□□□□ -1.29
CLN3-208ENST00000561505 SPRR2FQ96RM1 72 aa6.98□□□□□ -1.29
CLN3-208ENST00000561505 H0YAA0 97 aa6.97□□□□□ -1.29
CLN3-208ENST00000561505 SPRR2EP22531 72 aa6.96□□□□□ -1.3
CLN3-208ENST00000561505 SPRR2BP35325 72 aa6.96□□□□□ -1.3
CLN3-208ENST00000561505 SPRR2AP35326 72 aa6.96□□□□□ -1.3
CLN3-208ENST00000561505 UBL5Q9BZL1 73 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 121.5 ms