RNA–Protein interactions for RNA: ENST00000561442.5

USP3-221, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-221ENST00000561442 Q5XG85 94 aa8.02□□□□□ -1.13
USP3-221ENST00000561442 UQCRQO14949 82 aa8.01□□□□□ -1.13
USP3-221ENST00000561442 C1orf195Q5TG92 126 aa8□□□□□ -1.13
USP3-221ENST00000561442 KRTAP13-3Q3SY46 172 aa7.99□□□□□ -1.13
USP3-221ENST00000561442 SMIM20Q8N5G0 67 aa7.98□□□□□ -1.13
USP3-221ENST00000561442 MUC17Q685J3 4493 aa7.98□□□□□ -1.13
USP3-221ENST00000561442 COX7CP15954 63 aa7.97□□□□□ -1.13
USP3-221ENST00000561442 A0A1W2PNM2 257 aa7.96□□□□□ -1.14
USP3-221ENST00000561442 RNF213Q63HN8 5207 aa7.96□□□□□ -1.14
USP3-221ENST00000561442 SERP2Q8N6R1 65 aa7.95□□□□□ -1.14
USP3-221ENST00000561442 A0A087WSZ3 146 aa7.94□□□□□ -1.14
USP3-221ENST00000561442 CCDC179H3BU77 68 aa7.94□□□□□ -1.14
USP3-221ENST00000561442 NREPQ16612 68 aa7.94□□□□□ -1.14
USP3-221ENST00000561442 ASB16-AS1Q495Z4 193 aa7.93□□□□□ -1.14
USP3-221ENST00000561442 C9orf92A6NGG3 77 aa7.92□□□□□ -1.14
USP3-221ENST00000561442 SS18L2Q9UHA2 77 aa7.92□□□□□ -1.14
USP3-221ENST00000561442 A0A087WVE0 104 aa7.91□□□□□ -1.14
USP3-221ENST00000561442 BPY2O14599 106 aa7.88□□□□□ -1.15
USP3-221ENST00000561442 XP32Q5T750 250 aa7.87□□□□□ -1.15
USP3-221ENST00000561442 TRAV7A0A075B6U4 112 aa7.86□□□□□ -1.15
USP3-221ENST00000561442 Q96NJ1 140 aa7.84□□□□□ -1.15
USP3-221ENST00000561442 MUC2Q02817 5179 aa7.84□□□□□ -1.15
USP3-221ENST00000561442 IGKV4-1P06312 121 aa7.82□□□□□ -1.16
USP3-221ENST00000561442 DEFB116Q30KQ4 102 aa7.8□□□□□ -1.16
USP3-221ENST00000561442 SEC61BP60468 96 aaKnown RBP7.78□□□□□ -1.16
USP3-221ENST00000561442 TMEM258P61165 79 aa7.78□□□□□ -1.16
USP3-221ENST00000561442 LINC00472Q9H8W2 130 aa7.77□□□□□ -1.17
USP3-221ENST00000561442 NDUFC1O43677 76 aa7.74□□□□□ -1.17
USP3-221ENST00000561442 KLKP1Q107X0 134 aa7.74□□□□□ -1.17
USP3-221ENST00000561442 J3KT08 172 aa7.73□□□□□ -1.17
USP3-221ENST00000561442 DSCR10P59022 87 aa7.73□□□□□ -1.17
USP3-221ENST00000561442 PCOTHQ58A44 107 aa7.73□□□□□ -1.17
USP3-221ENST00000561442 RPL37P61927 97 aaKnown RBP7.71□□□□□ -1.18
USP3-221ENST00000561442 KRTAP4-1Q9BYQ7 146 aa7.7□□□□□ -1.18
USP3-221ENST00000561442 OCR1Q9BZK8 76 aa7.7□□□□□ -1.18
USP3-221ENST00000561442 IGHV6-1A0A0B4J1U7 121 aa7.69□□□□□ -1.18
USP3-221ENST00000561442 C20orf197Q8N268 126 aa7.69□□□□□ -1.18
USP3-221ENST00000561442 Q8N9L7 120 aa7.69□□□□□ -1.18
USP3-221ENST00000561442 RPS28P62857 69 aaKnown RBP7.68□□□□□ -1.18
USP3-221ENST00000561442 HCG22E2RYF7 251 aa7.67□□□□□ -1.18
USP3-221ENST00000561442 K7EQZ3 153 aa7.66□□□□□ -1.18
USP3-221ENST00000561442 ATP5EP56381 51 aaPredicted RBP7.66□□□□□ -1.18
USP3-221ENST00000561442 LINC00313P59037 77 aa7.66□□□□□ -1.18
USP3-221ENST00000561442 NOTCH2NLQ7Z3S9 236 aa7.66□□□□□ -1.18
USP3-221ENST00000561442 A8MWP4 228 aa7.65□□□□□ -1.18
USP3-221ENST00000561442 Q75L30 129 aa7.65□□□□□ -1.18
USP3-221ENST00000561442 A0A1B0GVX0 72 aa7.64□□□□□ -1.19
USP3-221ENST00000561442 TMEM254Q8TBM7 123 aa7.64□□□□□ -1.19
USP3-221ENST00000561442 NDUFB1O75438 58 aa7.62□□□□□ -1.19
USP3-221ENST00000561442 C5orf47Q569G3 176 aa7.62□□□□□ -1.19
USP3-221ENST00000561442 PRR15Q8IV56 129 aa7.62□□□□□ -1.19
USP3-221ENST00000561442 C20orf166-AS1Q96NR2 134 aa7.62□□□□□ -1.19
USP3-221ENST00000561442 FAT4Q6V0I7 4981 aa7.62□□□□□ -1.19
USP3-221ENST00000561442 A0A0U1RQV1 116 aa7.61□□□□□ -1.19
USP3-221ENST00000561442 A8MUU9 505 aa7.61□□□□□ -1.19
USP3-221ENST00000561442 KRTAP16-1A8MUX0 517 aa7.61□□□□□ -1.19
USP3-221ENST00000561442 H7BZZ5 65 aa7.61□□□□□ -1.19
USP3-221ENST00000561442 CYSTM1Q9H1C7 97 aa7.61□□□□□ -1.19
USP3-221ENST00000561442 C8orf87E5RJ46 101 aa7.6□□□□□ -1.19
USP3-221ENST00000561442 ATP11AUNQ6ZP68 121 aa7.6□□□□□ -1.19
USP3-221ENST00000561442 FAM236DA0A1B0GTK5 79 aa7.59□□□□□ -1.19
USP3-221ENST00000561442 FAM236CP0DP71 79 aa7.59□□□□□ -1.19
USP3-221ENST00000561442 H3BPC8 53 aa7.57□□□□□ -1.2
USP3-221ENST00000561442 CASC2Q6XLA1 102 aa7.56□□□□□ -1.2
USP3-221ENST00000561442 C8orf17Q9NRJ1 99 aa7.55□□□□□ -1.2
USP3-221ENST00000561442 SNURFQ9Y675 71 aa7.54□□□□□ -1.2
USP3-221ENST00000561442 MP68P56378 58 aa7.52□□□□□ -1.21
USP3-221ENST00000561442 SERP1Q9Y6X1 66 aa7.52□□□□□ -1.21
USP3-221ENST00000561442 TP53AIP1Q9HCN2 124 aa7.51□□□□□ -1.21
USP3-221ENST00000561442 MMP24-AS1A0A0U1RRL7 71 aa7.5□□□□□ -1.21
USP3-221ENST00000561442 WFDC13Q8IUB5 93 aa7.5□□□□□ -1.21
USP3-221ENST00000561442 ZCCHC13Q8WW36 166 aaKnown RBP7.5□□□□□ -1.21
USP3-221ENST00000561442 hDV103S1A0JD37 113 aa7.48□□□□□ -1.21
USP3-221ENST00000561442 KRTAP19-2Q3LHN2 52 aa7.45□□□□□ -1.22
USP3-221ENST00000561442 Q8N9P0 234 aaPredicted RBP7.45□□□□□ -1.22
USP3-221ENST00000561442 TRAV22A0A0B4J277 110 aa7.42□□□□□ -1.22
USP3-221ENST00000561442 H0Y9P7 68 aa7.42□□□□□ -1.22
USP3-221ENST00000561442 LCE2AQ5TA79 106 aaPredicted RBP7.42□□□□□ -1.22
USP3-221ENST00000561442 LCE2CQ5TA81 110 aa7.42□□□□□ -1.22
USP3-221ENST00000561442 MRPL34Q9BQ48 92 aaKnown RBP7.42□□□□□ -1.22
USP3-221ENST00000561442 SPANXA2-OT1Q8N9U9 137 aa7.4□□□□□ -1.22
USP3-221ENST00000561442 NDUFS5O43920 106 aa7.39□□□□□ -1.23
USP3-221ENST00000561442 COX6B2Q6YFQ2 88 aa7.39□□□□□ -1.23
USP3-221ENST00000561442 CYP4F30PQ9H0H9 118 aa7.39□□□□□ -1.23
USP3-221ENST00000561442 FLGP20930 4061 aaPredicted RBP7.37□□□□□ -1.23
USP3-221ENST00000561442 SMIM26A0A096LP01 95 aa7.37□□□□□ -1.23
USP3-221ENST00000561442 LINC00208Q96KT6 92 aa7.37□□□□□ -1.23
USP3-221ENST00000561442 C1orf64Q8NEQ6 169 aa7.35□□□□□ -1.23
USP3-221ENST00000561442 MT1HP80294 61 aa7.32□□□□□ -1.24
USP3-221ENST00000561442 HRES1P13985 223 aa7.31□□□□□ -1.24
USP3-221ENST00000561442 SPINK7P58062 85 aa7.31□□□□□ -1.24
USP3-221ENST00000561442 LOC101927531A0A1B0GV80 90 aa7.28□□□□□ -1.24
USP3-221ENST00000561442 Q5W150 140 aa7.27□□□□□ -1.25
USP3-221ENST00000561442 MPLKIPQ8TAP9 179 aa7.25□□□□□ -1.25
USP3-221ENST00000561442 RBM12B-AS1Q9P1G2 102 aa7.25□□□□□ -1.25
USP3-221ENST00000561442 M0R2T5 61 aa7.23□□□□□ -1.25
USP3-221ENST00000561442 IGKV2D-30A0A075B6S6 120 aa7.22□□□□□ -1.25
USP3-221ENST00000561442 IGKV2-30P06310 120 aa7.22□□□□□ -1.25
USP3-221ENST00000561442 V9GYY9 64 aa7.19□□□□□ -1.26
USP3-221ENST00000561442 C7orf65Q6ZTY9 151 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms