RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 FLG2Q5D862 2391 aaPredicted RBP10.42□□□□□ -0.74
SNX1-208ENST00000559844 A0A0U1RQV1 116 aa10.42□□□□□ -0.74
SNX1-208ENST00000559844 PKHD1L1Q86WI1 4243 aa10.41□□□□□ -0.74
SNX1-208ENST00000559844 C5orf47Q569G3 176 aa10.41□□□□□ -0.74
SNX1-208ENST00000559844 MMP24-AS1A0A0U1RRL7 71 aa10.39□□□□□ -0.75
SNX1-208ENST00000559844 A0A087X002 238 aa10.38□□□□□ -0.75
SNX1-208ENST00000559844 ABCA13Q86UQ4 5058 aa10.37□□□□□ -0.75
SNX1-208ENST00000559844 A0A1B0GVX0 72 aa10.37□□□□□ -0.75
SNX1-208ENST00000559844 ASB16-AS1Q495Z4 193 aa10.37□□□□□ -0.75
SNX1-208ENST00000559844 KRTAP13-2Q52LG2 175 aa10.37□□□□□ -0.75
SNX1-208ENST00000559844 FAM236DA0A1B0GTK5 79 aa10.36□□□□□ -0.75
SNX1-208ENST00000559844 KRTAP1-4P0C5Y4 121 aa10.36□□□□□ -0.75
SNX1-208ENST00000559844 FAM236CP0DP71 79 aa10.36□□□□□ -0.75
SNX1-208ENST00000559844 hDV103S1A0JD37 113 aa10.35□□□□□ -0.75
SNX1-208ENST00000559844 C8orf17Q9NRJ1 99 aa10.35□□□□□ -0.75
SNX1-208ENST00000559844 RPS28P62857 69 aaKnown RBP10.33□□□□□ -0.76
SNX1-208ENST00000559844 IGHV6-1A0A0B4J1U7 121 aa10.32□□□□□ -0.76
SNX1-208ENST00000559844 MP68P56378 58 aa10.32□□□□□ -0.76
SNX1-208ENST00000559844 Q5XG85 94 aa10.32□□□□□ -0.76
SNX1-208ENST00000559844 ATP5EP56381 51 aaPredicted RBP10.3□□□□□ -0.76
SNX1-208ENST00000559844 ZCCHC13Q8WW36 166 aaKnown RBP10.29□□□□□ -0.76
SNX1-208ENST00000559844 MYCBP2O75592 4640 aa10.28□□□□□ -0.76
SNX1-208ENST00000559844 H3BPC8 53 aa10.28□□□□□ -0.76
SNX1-208ENST00000559844 LIMD2Q9BT23 127 aa10.27□□□□□ -0.77
SNX1-208ENST00000559844 TP53AIP1Q9HCN2 124 aa10.27□□□□□ -0.77
SNX1-208ENST00000559844 PCLOQ9Y6V0 5065 aa10.26□□□□□ -0.77
SNX1-208ENST00000559844 TYMSOSQ8TAI1 123 aa10.25□□□□□ -0.77
SNX1-208ENST00000559844 LRP1Q07954 4544 aaKnown RBP10.25□□□□□ -0.77
SNX1-208ENST00000559844 H0Y9P7 68 aa10.25□□□□□ -0.77
SNX1-208ENST00000559844 PRR26Q8N8Z3 221 aa10.25□□□□□ -0.77
SNX1-208ENST00000559844 C4orf48Q5BLP8 95 aa10.24□□□□□ -0.77
SNX1-208ENST00000559844 MRPL34Q9BQ48 92 aaKnown RBP10.24□□□□□ -0.77
SNX1-208ENST00000559844 C8orf87E5RJ46 101 aa10.23□□□□□ -0.77
SNX1-208ENST00000559844 OXTP01178 125 aa10.23□□□□□ -0.77
SNX1-208ENST00000559844 TRAV22A0A0B4J277 110 aa10.21□□□□□ -0.78
SNX1-208ENST00000559844 LINC00208Q96KT6 92 aa10.21□□□□□ -0.78
SNX1-208ENST00000559844 SERP1Q9Y6X1 66 aa10.21□□□□□ -0.78
SNX1-208ENST00000559844 FAT3Q8TDW7 4589 aa10.2□□□□□ -0.78
SNX1-208ENST00000559844 C1orf195Q5TG92 126 aa10.2□□□□□ -0.78
SNX1-208ENST00000559844 SPINK1P00995 79 aa10.19□□□□□ -0.78
SNX1-208ENST00000559844 NOTCH2NLQ7Z3S9 236 aa10.19□□□□□ -0.78
SNX1-208ENST00000559844 NDUFS5O43920 106 aa10.18□□□□□ -0.78
SNX1-208ENST00000559844 MT1HL1P0DM35 61 aa10.15□□□□□ -0.78
SNX1-208ENST00000559844 KRTAP10-8P60410 259 aa10.15□□□□□ -0.78
SNX1-208ENST00000559844 C1orf64Q8NEQ6 169 aa10.15□□□□□ -0.78
SNX1-208ENST00000559844 J3QL48 77 aa10.14□□□□□ -0.79
SNX1-208ENST00000559844 RPS29P62273 56 aaKnown RBP10.14□□□□□ -0.79
SNX1-208ENST00000559844 SPAG11AQ6PDA7 123 aa10.14□□□□□ -0.79
SNX1-208ENST00000559844 LINC00313P59037 77 aa10.13□□□□□ -0.79
SNX1-208ENST00000559844 LINC00304Q8N9R0 145 aa10.12□□□□□ -0.79
SNX1-208ENST00000559844 TNXBP22105 4242 aa10.11□□□□□ -0.79
SNX1-208ENST00000559844 DMBT1Q9UGM3 2413 aaPredicted RBP10.09□□□□□ -0.79
SNX1-208ENST00000559844 SPANXA2-OT1Q8N9U9 137 aa10.05□□□□□ -0.8
SNX1-208ENST00000559844 CYP4F30PQ9H0H9 118 aa10.05□□□□□ -0.8
SNX1-208ENST00000559844 Q8N9P0 234 aaPredicted RBP10.02□□□□□ -0.81
SNX1-208ENST00000559844 SMIM26A0A096LP01 95 aa9.99□□□□□ -0.81
SNX1-208ENST00000559844 LOC101927531A0A1B0GV80 90 aa9.99□□□□□ -0.81
SNX1-208ENST00000559844 KRTAP16-1A8MUX0 517 aa9.98□□□□□ -0.81
SNX1-208ENST00000559844 KRTAP13-3Q3SY46 172 aa9.97□□□□□ -0.81
SNX1-208ENST00000559844 Q5W150 140 aa9.96□□□□□ -0.81
SNX1-208ENST00000559844 PRR4Q16378 134 aa9.95□□□□□ -0.82
SNX1-208ENST00000559844 PCOTHQ58A44 107 aa9.94□□□□□ -0.82
SNX1-208ENST00000559844 IGLV7-46A0A075B6I9 117 aa9.93□□□□□ -0.82
SNX1-208ENST00000559844 FP248Q71RG6 208 aaPredicted RBP9.86□□□□□ -0.83
SNX1-208ENST00000559844 HERC1Q15751 4861 aa9.84□□□□□ -0.83
SNX1-208ENST00000559844 RETNLBQ9BQ08 111 aa9.83□□□□□ -0.84
SNX1-208ENST00000559844 IGKV2-30P06310 120 aa9.82□□□□□ -0.84
SNX1-208ENST00000559844 C4orf26Q17RF5 130 aa9.78□□□□□ -0.84
SNX1-208ENST00000559844 COA5Q86WW8 74 aa9.75□□□□□ -0.85
SNX1-208ENST00000559844 MPLKIPQ8TAP9 179 aa9.74□□□□□ -0.85
SNX1-208ENST00000559844 HRES1P13985 223 aa9.72□□□□□ -0.85
SNX1-208ENST00000559844 C9orf92A6NGG3 77 aa9.72□□□□□ -0.85
SNX1-208ENST00000559844 C20orf166-AS1Q96NR2 134 aa9.72□□□□□ -0.85
SNX1-208ENST00000559844 A8MUU9 505 aa9.71□□□□□ -0.86
SNX1-208ENST00000559844 Q1T7F1 81 aa9.71□□□□□ -0.86
SNX1-208ENST00000559844 IGKV2D-30A0A075B6S6 120 aa9.69□□□□□ -0.86
SNX1-208ENST00000559844 V9GYY9 64 aa9.68□□□□□ -0.86
SNX1-208ENST00000559844 ACYP2P14621 99 aa9.66□□□□□ -0.86
SNX1-208ENST00000559844 C7orf65Q6ZTY9 151 aa9.65□□□□□ -0.86
SNX1-208ENST00000559844 DMAC1Q96GE9 116 aa9.65□□□□□ -0.86
SNX1-208ENST00000559844 HMCN2Q8NDA2 5059 aa9.61□□□□□ -0.87
SNX1-208ENST00000559844 Q75L30 129 aa9.59□□□□□ -0.87
SNX1-208ENST00000559844 TPRXLQ17RH7 258 aa9.56□□□□□ -0.88
SNX1-208ENST00000559844 LPAP08519 4548 aa9.54□□□□□ -0.88
SNX1-208ENST00000559844 CHKB-CPT1BH3BT56 60 aa9.52□□□□□ -0.89
SNX1-208ENST00000559844 PSPHP1O15172 72 aa9.5□□□□□ -0.89
SNX1-208ENST00000559844 A8MUN3 132 aa9.48□□□□□ -0.89
SNX1-208ENST00000559844 LINC01558Q9Y6Z2 57 aa9.48□□□□□ -0.89
SNX1-208ENST00000559844 LRP2P98164 4655 aa9.47□□□□□ -0.89
SNX1-208ENST00000559844 PRR15LQ9BU68 103 aa9.45□□□□□ -0.9
SNX1-208ENST00000559844 SPINK7P58062 85 aa9.44□□□□□ -0.9
SNX1-208ENST00000559844 ATP11AUNQ6ZP68 121 aa9.44□□□□□ -0.9
SNX1-208ENST00000559844 RPL37P61927 97 aaKnown RBP9.43□□□□□ -0.9
SNX1-208ENST00000559844 XP32Q5T750 250 aa9.43□□□□□ -0.9
SNX1-208ENST00000559844 Q5VV11 94 aa9.41□□□□□ -0.9
SNX1-208ENST00000559844 BRK1Q8WUW1 75 aa9.37□□□□□ -0.91
SNX1-208ENST00000559844 PRO0628Q9UI54 55 aa9.34□□□□□ -0.91
SNX1-208ENST00000559844 SVIPQ8NHG7 77 aa9.32□□□□□ -0.92
SNX1-208ENST00000559844 UBR4Q5T4S7 5183 aa9.28□□□□□ -0.92
SNX1-208ENST00000559844 COX6B2Q6YFQ2 88 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 140.7 ms