RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 SPINK1P00995 79 aa4.64□□□□□ -1.67
USP3-211ENST00000559257 RPL37P61927 97 aaKnown RBP4.64□□□□□ -1.67
USP3-211ENST00000559257 TYMSOSQ8TAI1 123 aa4.64□□□□□ -1.67
USP3-211ENST00000559257 NF1P21359 2839 aa4.64□□□□□ -1.67
USP3-211ENST00000559257 APCP25054 2843 aa4.63□□□□□ -1.67
USP3-211ENST00000559257 ZANQ9Y493 2812 aa4.63□□□□□ -1.67
USP3-211ENST00000559257 LCE2CQ5TA81 110 aa4.63□□□□□ -1.67
USP3-211ENST00000559257 C10orf95Q9H7T3 257 aa4.62□□□□□ -1.67
USP3-211ENST00000559257 JMJD1CQ15652 2540 aa4.62□□□□□ -1.67
USP3-211ENST00000559257 SETXQ7Z333 2677 aaKnown RBP4.62□□□□□ -1.67
USP3-211ENST00000559257 KRTAP13-1Q8IUC0 172 aa4.61□□□□□ -1.67
USP3-211ENST00000559257 SONP18583 2426 aaKnown RBP4.61□□□□□ -1.67
USP3-211ENST00000559257 C14orf177Q52M58 125 aa4.6□□□□□ -1.67
USP3-211ENST00000559257 ABCA12Q86UK0 2595 aa4.59□□□□□ -1.67
USP3-211ENST00000559257 FLNAP21333 2647 aaKnown RBP4.59□□□□□ -1.67
USP3-211ENST00000559257 HIVEP2P31629 2446 aa4.59□□□□□ -1.67
USP3-211ENST00000559257 SMR3AQ99954 134 aa4.58□□□□□ -1.68
USP3-211ENST00000559257 FN1P02751 2386 aaKnown RBP4.58□□□□□ -1.68
USP3-211ENST00000559257 GCN1Q92616 2671 aaKnown RBP4.56□□□□□ -1.68
USP3-211ENST00000559257 F8P00451 2351 aa4.56□□□□□ -1.68
USP3-211ENST00000559257 WWC2-AS2Q96NR7 200 aa4.56□□□□□ -1.68
USP3-211ENST00000559257 CCDC168Q8NDH2 2452 aa4.55□□□□□ -1.68
USP3-211ENST00000559257 CSMD2Q7Z408 3487 aa4.55□□□□□ -1.68
USP3-211ENST00000559257 TENM4Q6N022 2769 aa4.55□□□□□ -1.68
USP3-211ENST00000559257 SPINK6Q6UWN8 80 aa4.54□□□□□ -1.68
USP3-211ENST00000559257 FASNP49327 2511 aaKnown RBP4.54□□□□□ -1.68
USP3-211ENST00000559257 KRTAP10-11P60412 298 aa4.52□□□□□ -1.69
USP3-211ENST00000559257 ANK3Q12955 4377 aaKnown RBP4.51□□□□□ -1.69
USP3-211ENST00000559257 ZNF469Q96JG9 3925 aaPredicted RBP4.51□□□□□ -1.69
USP3-211ENST00000559257 PDZD2O15018 2839 aa4.51□□□□□ -1.69
USP3-211ENST00000559257 LORP23490 312 aaPredicted RBP4.5□□□□□ -1.69
USP3-211ENST00000559257 Q8N1X5 172 aa4.5□□□□□ -1.69
USP3-211ENST00000559257 PLAC4Q8WY50 150 aa4.5□□□□□ -1.69
USP3-211ENST00000559257 KRTAP4-8Q9BYQ9 185 aa4.5□□□□□ -1.69
USP3-211ENST00000559257 CENPEQ02224 2701 aa4.49□□□□□ -1.69
USP3-211ENST00000559257 BAHCC1Q9P281 2608 aa4.49□□□□□ -1.69
USP3-211ENST00000559257 MTORP42345 2549 aa4.49□□□□□ -1.69
USP3-211ENST00000559257 PRO2289Q9P1D8 64 aa4.49□□□□□ -1.69
USP3-211ENST00000559257 FLNBO75369 2602 aaKnown RBP4.49□□□□□ -1.69
USP3-211ENST00000559257 HELZ2Q9BYK8 2649 aaKnown RBP4.49□□□□□ -1.69
USP3-211ENST00000559257 ACANP16112 2415 aa4.48□□□□□ -1.69
USP3-211ENST00000559257 NOTCH2Q04721 2471 aa4.47□□□□□ -1.69
USP3-211ENST00000559257 SETD2Q9BYW2 2564 aaPredicted RBP4.47□□□□□ -1.69
USP3-211ENST00000559257 KRTAP17-1Q9BYP8 105 aa4.47□□□□□ -1.69
USP3-211ENST00000559257 HECTD1Q9ULT8 2610 aa4.45□□□□□ -1.7
USP3-211ENST00000559257 CUBNO60494 3623 aa4.42□□□□□ -1.7
USP3-211ENST00000559257 UBE2DNLQ8IWF7 75 aa4.42□□□□□ -1.7
USP3-211ENST00000559257 NBEAL2Q6ZNJ1 2754 aa4.42□□□□□ -1.7
USP3-211ENST00000559257 S4R3F8 94 aa4.41□□□□□ -1.7
USP3-211ENST00000559257 FBN1P35555 2871 aaKnown RBP4.41□□□□□ -1.7
USP3-211ENST00000559257 UNC79Q9P2D8 2635 aa4.4□□□□□ -1.7
USP3-211ENST00000559257 KRTAP9-8Q9BYQ0 159 aa4.39□□□□□ -1.71
USP3-211ENST00000559257 DNAH1Q9P2D7 4330 aa4.39□□□□□ -1.71
USP3-211ENST00000559257 Q6ZRN7 208 aaPredicted RBP4.38□□□□□ -1.71
USP3-211ENST00000559257 NIPBLQ6KC79 2804 aaeCLIP4.38□□□□□ -1.71
USP3-211ENST00000559257 SRRM2Q9UQ35 2752 aaKnown RBP4.37□□□□□ -1.71
USP3-211ENST00000559257 NSD1Q96L73 2696 aaPredicted RBP4.37□□□□□ -1.71
USP3-211ENST00000559257 MAST4O15021 2626 aa4.37□□□□□ -1.71
USP3-211ENST00000559257 APLNQ9ULZ1 77 aa4.37□□□□□ -1.71
USP3-211ENST00000559257 HIVEP1P15822 2718 aa4.36□□□□□ -1.71
USP3-211ENST00000559257 TEP1Q99973 2627 aaKnown RBP4.36□□□□□ -1.71
USP3-211ENST00000559257 VWFP04275 2813 aa4.36□□□□□ -1.71
USP3-211ENST00000559257 A0A0D9SG42 100 aa4.36□□□□□ -1.71
USP3-211ENST00000559257 KRTAP13-4Q3LI77 160 aa4.36□□□□□ -1.71
USP3-211ENST00000559257 KRTAP10-6P60371 365 aaPredicted RBP4.35□□□□□ -1.71
USP3-211ENST00000559257 SPACA4Q8TDM5 124 aa4.35□□□□□ -1.71
USP3-211ENST00000559257 KRTAP3-1Q9BYR8 98 aa4.35□□□□□ -1.71
USP3-211ENST00000559257 CSMD3Q7Z407 3707 aa4.35□□□□□ -1.71
USP3-211ENST00000559257 KRTAP4-8A0A0G2JLE6 195 aa4.34□□□□□ -1.71
USP3-211ENST00000559257 KRTAP1-5Q9BYS1 174 aa4.34□□□□□ -1.71
USP3-211ENST00000559257 ITPR2Q14571 2701 aa4.34□□□□□ -1.71
USP3-211ENST00000559257 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.33□□□□□ -1.72
USP3-211ENST00000559257 KRTAP9-2Q9BYQ4 174 aa4.33□□□□□ -1.72
USP3-211ENST00000559257 KRTAP5-3Q6L8H2 238 aa4.33□□□□□ -1.72
USP3-211ENST00000559257 KRTAP9-6A0A140TA67 174 aa4.32□□□□□ -1.72
USP3-211ENST00000559257 ATRQ13535 2644 aa4.31□□□□□ -1.72
USP3-211ENST00000559257 MEGF8Q7Z7M0 2845 aa4.31□□□□□ -1.72
USP3-211ENST00000559257 KRTAP12-2P59991 146 aa4.3□□□□□ -1.72
USP3-211ENST00000559257 KRTAP4-7Q9BYR0 210 aa4.28□□□□□ -1.72
USP3-211ENST00000559257 R4GN34 69 aa4.28□□□□□ -1.72
USP3-211ENST00000559257 INE1O15225 51 aa4.27□□□□□ -1.73
USP3-211ENST00000559257 TENM1Q9UKZ4 2725 aa4.27□□□□□ -1.73
USP3-211ENST00000559257 FRAS1Q86XX4 4008 aa4.26□□□□□ -1.73
USP3-211ENST00000559257 KRTAP12-1P59990 96 aa4.26□□□□□ -1.73
USP3-211ENST00000559257 DNAH3Q8TD57 4116 aa4.26□□□□□ -1.73
USP3-211ENST00000559257 TRRAPQ9Y4A5 3859 aa4.25□□□□□ -1.73
USP3-211ENST00000559257 LCE3BQ5TA77 95 aa4.25□□□□□ -1.73
USP3-211ENST00000559257 TENM3Q9P273 2699 aa4.23□□□□□ -1.73
USP3-211ENST00000559257 VPS13DQ5THJ4 4388 aa4.21□□□□□ -1.74
USP3-211ENST00000559257 KRTAP23-1A1A580 65 aa4.19□□□□□ -1.74
USP3-211ENST00000559257 ANK2Q01484 3957 aa4.19□□□□□ -1.74
USP3-211ENST00000559257 PKD1L1Q8TDX9 2849 aa4.17□□□□□ -1.74
USP3-211ENST00000559257 CMYA5Q8N3K9 4069 aa4.17□□□□□ -1.74
USP3-211ENST00000559257 COL6A5A8TX70 2615 aa4.16□□□□□ -1.74
USP3-211ENST00000559257 HUWE1Q7Z6Z7 4374 aaKnown RBP4.16□□□□□ -1.74
USP3-211ENST00000559257 PP632Q6XCG6 107 aa4.15□□□□□ -1.74
USP3-211ENST00000559257 DNAH8Q96JB1 4490 aa4.15□□□□□ -1.74
USP3-211ENST00000559257 SPRR5A0A1B0GTR4 108 aa4.13□□□□□ -1.75
USP3-211ENST00000559257 KRTAP10-8P60410 259 aa4.13□□□□□ -1.75
USP3-211ENST00000559257 NBEAL1Q6ZS30 2694 aa4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms