RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 ABCC1P33527 1531 aa0.15□□□□□ -2.39
VPS13C-207ENST00000558919 LMTK2Q8IWU2 1503 aa0.15□□□□□ -2.39
VPS13C-207ENST00000558919 KANTRA0A1W2PQU2 76 aa0.15□□□□□ -2.39
VPS13C-207ENST00000558919 CEBPZOSA8MTT3 80 aa0.15□□□□□ -2.39
VPS13C-207ENST00000558919 LOC730098B7Z3J9 87 aa0.15□□□□□ -2.39
VPS13C-207ENST00000558919 CCL22O00626 93 aa0.15□□□□□ -2.39
VPS13C-207ENST00000558919 SPRR2EP22531 72 aa0.15□□□□□ -2.39
VPS13C-207ENST00000558919 SPRR2DP22532 72 aa0.15□□□□□ -2.39
VPS13C-207ENST00000558919 SPRR2BP35325 72 aa0.15□□□□□ -2.39
VPS13C-207ENST00000558919 SPRR2AP35326 72 aa0.15□□□□□ -2.39
VPS13C-207ENST00000558919 LRP2P98164 4655 aa0.15□□□□□ -2.39
VPS13C-207ENST00000558919 KLK9Q2XQG4 91 aa0.15□□□□□ -2.39
VPS13C-207ENST00000558919 MRPL34Q9BQ48 92 aaKnown RBP0.15□□□□□ -2.39
VPS13C-207ENST00000558919 EIF2AK4Q9P2K8 1649 aaKnown RBP0.15□□□□□ -2.39
VPS13C-207ENST00000558919 ASXL3Q9C0F0 2248 aa0.15□□□□□ -2.39
VPS13C-207ENST00000558919 HSPG2P98160 4391 aa0.15□□□□□ -2.39
VPS13C-207ENST00000558919 ATP7BP35670 1465 aa0.15□□□□□ -2.39
VPS13C-207ENST00000558919 FANCD2Q9BXW9 1451 aa0.15□□□□□ -2.39
VPS13C-207ENST00000558919 INO80Q9ULG1 1556 aaPredicted RBP0.15□□□□□ -2.39
VPS13C-207ENST00000558919 DYNC2H1Q8NCM8 4307 aaKnown RBP0.14□□□□□ -2.39
VPS13C-207ENST00000558919 CACNA1CQ13936 2221 aa0.14□□□□□ -2.39
VPS13C-207ENST00000558919 STARD9Q9P2P6 4700 aa0.14□□□□□ -2.39
VPS13C-207ENST00000558919 PIK3C2BO00750 1634 aa0.14□□□□□ -2.39
VPS13C-207ENST00000558919 KMT2AQ03164 3969 aa0.14□□□□□ -2.39
VPS13C-207ENST00000558919 WNK2Q9Y3S1 2297 aa0.14□□□□□ -2.39
VPS13C-207ENST00000558919 COX7BP24311 80 aa0.14□□□□□ -2.39
VPS13C-207ENST00000558919 RPL38P63173 70 aaKnown RBP0.14□□□□□ -2.39
VPS13C-207ENST00000558919 TDRG1Q3Y452 100 aa0.14□□□□□ -2.39
VPS13C-207ENST00000558919 GAFA1Q96PS6 74 aa0.14□□□□□ -2.39
VPS13C-207ENST00000558919 DYNC1H1Q14204 4646 aaKnown RBP0.14□□□□□ -2.39
VPS13C-207ENST00000558919 PLXNC1O60486 1568 aa0.14□□□□□ -2.39
VPS13C-207ENST00000558919 IQGAP2Q13576 1575 aa0.14□□□□□ -2.39
VPS13C-207ENST00000558919 DUOX1Q9NRD9 1551 aa0.14□□□□□ -2.39
VPS13C-207ENST00000558919 FAM208AQ9UK61 1670 aaKnown RBP0.14□□□□□ -2.39
VPS13C-207ENST00000558919 BCORQ6W2J9 1755 aa0.14□□□□□ -2.39
VPS13C-207ENST00000558919 HFM1A2PYH4 1435 aa0.13□□□□□ -2.39
VPS13C-207ENST00000558919 CLIP1P30622 1438 aa0.13□□□□□ -2.39
VPS13C-207ENST00000558919 ERICH3Q5RHP9 1530 aa0.13□□□□□ -2.39
VPS13C-207ENST00000558919 SACSQ9NZJ4 4579 aa0.13□□□□□ -2.39
VPS13C-207ENST00000558919 ABCA9Q8IUA7 1624 aa0.13□□□□□ -2.39
VPS13C-207ENST00000558919 BTAF1O14981 1849 aa0.13□□□□□ -2.39
VPS13C-207ENST00000558919 HUWE1Q7Z6Z7 4374 aaKnown RBP0.13□□□□□ -2.39
VPS13C-207ENST00000558919 CUBNO60494 3623 aa0.13□□□□□ -2.39
VPS13C-207ENST00000558919 MT4P47944 62 aa0.13□□□□□ -2.39
VPS13C-207ENST00000558919 ADIRFQ15847 76 aa0.13□□□□□ -2.39
VPS13C-207ENST00000558919 S100A13Q99584 98 aa0.13□□□□□ -2.39
VPS13C-207ENST00000558919 DNAH7Q8WXX0 4024 aa0.13□□□□□ -2.39
VPS13C-207ENST00000558919 ARHGAP35Q9NRY4 1499 aa0.13□□□□□ -2.39
VPS13C-207ENST00000558919 LPAP08519 4548 aa0.13□□□□□ -2.39
VPS13C-207ENST00000558919 KIF1AQ12756 1690 aa0.13□□□□□ -2.39
VPS13C-207ENST00000558919 CSMD3Q7Z407 3707 aa0.13□□□□□ -2.39
VPS13C-207ENST00000558919 C4BP0C0L5 1744 aa0.13□□□□□ -2.39
VPS13C-207ENST00000558919 URB1O60287 2271 aaKnown RBP0.12□□□□□ -2.39
VPS13C-207ENST00000558919 A0A1B0GUL6 1792 aa0.12□□□□□ -2.39
VPS13C-207ENST00000558919 CDC42BPGQ6DT37 1551 aa0.12□□□□□ -2.39
VPS13C-207ENST00000558919 SPENQ96T58 3664 aaKnown RBP0.12□□□□□ -2.39
VPS13C-207ENST00000558919 H1FX-AS1Q4G0G2 97 aa0.12□□□□□ -2.39
VPS13C-207ENST00000558919 HEPN1Q6WQI6 88 aa0.12□□□□□ -2.39
VPS13C-207ENST00000558919 WFDC9Q8NEX5 89 aa0.12□□□□□ -2.39
VPS13C-207ENST00000558919 ST20Q9HBF5 79 aa0.12□□□□□ -2.39
VPS13C-207ENST00000558919 DNAH1Q9P2D7 4330 aa0.12□□□□□ -2.39
VPS13C-207ENST00000558919 PRKDCP78527 4128 aaKnown RBP0.12□□□□□ -2.39
VPS13C-207ENST00000558919 TOP2AP11388 1531 aaKnown RBP0.12□□□□□ -2.39
VPS13C-207ENST00000558919 RRBP1Q9P2E9 1410 aaKnown RBP0.12□□□□□ -2.39
VPS13C-207ENST00000558919 ALMS1Q8TCU4 4167 aa0.12□□□□□ -2.39
VPS13C-207ENST00000558919 DNAH14Q0VDD8 3507 aa0.12□□□□□ -2.39
VPS13C-207ENST00000558919 WDFY3Q8IZQ1 3526 aa0.12□□□□□ -2.39
VPS13C-207ENST00000558919 AKAP6Q13023 2319 aa0.12□□□□□ -2.39
VPS13C-207ENST00000558919 PLCE1Q9P212 2302 aa0.12□□□□□ -2.39
VPS13C-207ENST00000558919 SMG1Q96Q15 3661 aaKnown RBP0.11□□□□□ -2.39
VPS13C-207ENST00000558919 PKHD1P08F94 4074 aa0.11□□□□□ -2.39
VPS13C-207ENST00000558919 MYO15AQ9UKN7 3530 aa0.11□□□□□ -2.39
VPS13C-207ENST00000558919 PLECQ15149 4684 aaKnown RBP0.11□□□□□ -2.39
VPS13C-207ENST00000558919 PLXNB2O15031 1838 aa0.11□□□□□ -2.39
VPS13C-207ENST00000558919 PKHD1L1Q86WI1 4243 aa0.11□□□□□ -2.39
VPS13C-207ENST00000558919 CRYBG1Q9Y4K1 1723 aa0.11□□□□□ -2.39
VPS13C-207ENST00000558919 TRAV21A0A0B4J279 112 aa0.11□□□□□ -2.39
VPS13C-207ENST00000558919 NDUFB1O75438 58 aa0.11□□□□□ -2.39
VPS13C-207ENST00000558919 SMR3BP02814 79 aaPredicted RBP0.11□□□□□ -2.39
VPS13C-207ENST00000558919 CDKN2A-AS1Q9UH64 79 aa0.11□□□□□ -2.39
VPS13C-207ENST00000558919 ABCA10Q8WWZ4 1543 aa0.11□□□□□ -2.39
VPS13C-207ENST00000558919 VPS13CQ709C8 3753 aa0.11□□□□□ -2.39
VPS13C-207ENST00000558919 LAMA5O15230 3695 aa0.1□□□□□ -2.39
VPS13C-207ENST00000558919 ARFGEF2Q9Y6D5 1785 aa0.1□□□□□ -2.39
VPS13C-207ENST00000558919 SYCP2Q9BX26 1530 aa0.1□□□□□ -2.39
VPS13C-207ENST00000558919 PRM1P04553 51 aa0.1□□□□□ -2.39
VPS13C-207ENST00000558919 DNAH5Q8TE73 4624 aa0.1□□□□□ -2.39
VPS13C-207ENST00000558919 DNAH9Q9NYC9 4486 aa0.1□□□□□ -2.39
VPS13C-207ENST00000558919 DNAH10Q8IVF4 4471 aa0.09□□□□□ -2.39
VPS13C-207ENST00000558919 DEFB124Q8NES8 71 aa0.09□□□□□ -2.4
VPS13C-207ENST00000558919 SPRR2FQ96RM1 72 aa0.09□□□□□ -2.4
VPS13C-207ENST00000558919 FAT1Q14517 4588 aa0.09□□□□□ -2.4
VPS13C-207ENST00000558919 AKAP9Q99996 3911 aa0.09□□□□□ -2.4
VPS13C-207ENST00000558919 NCOA2Q15596 1464 aa0.09□□□□□ -2.4
VPS13C-207ENST00000558919 PRXQ9BXM0 1461 aa0.09□□□□□ -2.4
VPS13C-207ENST00000558919 ANKRD36CQ5JPF3 1778 aa0.09□□□□□ -2.4
VPS13C-207ENST00000558919 ANK3Q12955 4377 aaKnown RBP0.08□□□□□ -2.4
VPS13C-207ENST00000558919 ANKRD50Q9ULJ7 1429 aa0.08□□□□□ -2.4
VPS13C-207ENST00000558919 HECTD4Q9Y4D8 3996 aa0.08□□□□□ -2.4
VPS13C-207ENST00000558919 H3BUT2 72 aa0.08□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms