RNA–Protein interactions for RNA: ENST00000557356.5

PSEN1-222, Transcript of presenilin 1, human

TSL 4

Gene PSEN1, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PSEN1-222	ENST00000557356	C9orf92	A6NGG3	77 aa		4.3	□□□□□ -1.72
PSEN1-222	ENST00000557356	RBM3	P98179	157 aa	Known RBP	4.3	□□□□□ -1.72
PSEN1-222	ENST00000557356	LCE3B	Q5TA77	95 aa		4.3	□□□□□ -1.72
PSEN1-222	ENST00000557356	DSCR8	Q96T75	97 aa		4.3	□□□□□ -1.72
PSEN1-222	ENST00000557356		A0A087WSZ3	146 aa		4.29	□□□□□ -1.72
PSEN1-222	ENST00000557356	UBR4	Q5T4S7	5183 aa		4.29	□□□□□ -1.72
PSEN1-222	ENST00000557356	JMJD7-PLA2G4B	H0Y9G9	81 aa		4.28	□□□□□ -1.72
PSEN1-222	ENST00000557356	KRTAP19-1	Q8IUB9	90 aa		4.28	□□□□□ -1.72
PSEN1-222	ENST00000557356	LRP2	P98164	4655 aa		4.27	□□□□□ -1.73
PSEN1-222	ENST00000557356	CCK	P06307	115 aa		4.27	□□□□□ -1.73
PSEN1-222	ENST00000557356	PDE6G	P18545	87 aa		4.27	□□□□□ -1.73
PSEN1-222	ENST00000557356		A0A1B0GW54	56 aa		4.26	□□□□□ -1.73
PSEN1-222	ENST00000557356		A0A1W2PNM2	257 aa		4.26	□□□□□ -1.73
PSEN1-222	ENST00000557356	RPL37	P61927	97 aa	Known RBP	4.25	□□□□□ -1.73
PSEN1-222	ENST00000557356	PCOTH	Q58A44	107 aa		4.25	□□□□□ -1.73
PSEN1-222	ENST00000557356	ATP11AUN	Q6ZP68	121 aa		4.25	□□□□□ -1.73
PSEN1-222	ENST00000557356	ATP5EP2	Q5VTU8	51 aa		4.24	□□□□□ -1.73
PSEN1-222	ENST00000557356		Q75L30	129 aa		4.23	□□□□□ -1.73
PSEN1-222	ENST00000557356		Q96NJ1	140 aa		4.23	□□□□□ -1.73
PSEN1-222	ENST00000557356		J3KT08	172 aa		4.22	□□□□□ -1.73
PSEN1-222	ENST00000557356	IGKV4-1	P06312	121 aa		4.22	□□□□□ -1.73
PSEN1-222	ENST00000557356	LPA	P08519	4548 aa		4.22	□□□□□ -1.73
PSEN1-222	ENST00000557356	LOC110117498	A0A087WWA1	95 aa		4.21	□□□□□ -1.74
PSEN1-222	ENST00000557356	LINC00313	P59037	77 aa		4.21	□□□□□ -1.74
PSEN1-222	ENST00000557356	HIST1H4A	P62805	103 aa	Known RBP	4.21	□□□□□ -1.74
PSEN1-222	ENST00000557356	KRTAP9-9	Q9BYP9	154 aa		4.21	□□□□□ -1.74
PSEN1-222	ENST00000557356	KRTAP9-4	Q9BYQ2	154 aa		4.21	□□□□□ -1.74
PSEN1-222	ENST00000557356	C14orf132	Q9NPU4	83 aa		4.21	□□□□□ -1.74
PSEN1-222	ENST00000557356	FAM236A	A0A1B0GUQ0	79 aa		4.2	□□□□□ -1.74
PSEN1-222	ENST00000557356	FAM236B	A0A1B0GV22	79 aa		4.2	□□□□□ -1.74
PSEN1-222	ENST00000557356	ATOX1	O00244	68 aa		4.2	□□□□□ -1.74
PSEN1-222	ENST00000557356	LINC00472	Q9H8W2	130 aa		4.2	□□□□□ -1.74
PSEN1-222	ENST00000557356	UQCRQ	O14949	82 aa		4.19	□□□□□ -1.74
PSEN1-222	ENST00000557356	NDUFB1	O75438	58 aa		4.19	□□□□□ -1.74
PSEN1-222	ENST00000557356		Q6ZQT0	140 aa		4.19	□□□□□ -1.74
PSEN1-222	ENST00000557356	C20orf166-AS1	Q96NR2	134 aa		4.19	□□□□□ -1.74
PSEN1-222	ENST00000557356	LINC00846	Q9NV44	126 aa		4.19	□□□□□ -1.74
PSEN1-222	ENST00000557356	C8orf87	E5RJ46	101 aa		4.18	□□□□□ -1.74
PSEN1-222	ENST00000557356	KRTAP4-1	Q9BYQ7	146 aa		4.18	□□□□□ -1.74
PSEN1-222	ENST00000557356	UBL5	Q9BZL1	73 aa		4.18	□□□□□ -1.74
PSEN1-222	ENST00000557356	RNF213	Q63HN8	5207 aa		4.18	□□□□□ -1.74
PSEN1-222	ENST00000557356		A8MUU9	505 aa		4.17	□□□□□ -1.74
PSEN1-222	ENST00000557356	CCDC179	H3BU77	68 aa		4.17	□□□□□ -1.74
PSEN1-222	ENST00000557356	COX7C	P15954	63 aa		4.17	□□□□□ -1.74
PSEN1-222	ENST00000557356	NREP	Q16612	68 aa		4.16	□□□□□ -1.74
PSEN1-222	ENST00000557356	DEFB116	Q30KQ4	102 aa		4.16	□□□□□ -1.74
PSEN1-222	ENST00000557356	IGHV6-1	A0A0B4J1U7	121 aa		4.15	□□□□□ -1.75
PSEN1-222	ENST00000557356		A0A1B0GVX0	72 aa		4.15	□□□□□ -1.75
PSEN1-222	ENST00000557356	DSCR10	P59022	87 aa		4.15	□□□□□ -1.75
PSEN1-222	ENST00000557356	SERP2	Q8N6R1	65 aa		4.15	□□□□□ -1.75
PSEN1-222	ENST00000557356	SMIM20	Q8N5G0	67 aa		4.14	□□□□□ -1.75
PSEN1-222	ENST00000557356	IGKV3D-7	A0A0C4DH55	119 aa		4.13	□□□□□ -1.75
PSEN1-222	ENST00000557356	CXCL6	P80162	114 aa		4.13	□□□□□ -1.75
PSEN1-222	ENST00000557356	COX6B2	Q6YFQ2	88 aa		4.13	□□□□□ -1.75
PSEN1-222	ENST00000557356		A8MWP4	228 aa		4.12	□□□□□ -1.75
PSEN1-222	ENST00000557356	KRTAP4-8	A0A0G2JLE6	195 aa		4.11	□□□□□ -1.75
PSEN1-222	ENST00000557356	KRTAP16-1	A8MUX0	517 aa		4.1	□□□□□ -1.75
PSEN1-222	ENST00000557356	RPS28	P62857	69 aa	Known RBP	4.1	□□□□□ -1.75
PSEN1-222	ENST00000557356	TMEM258	P61165	79 aa		4.09	□□□□□ -1.75
PSEN1-222	ENST00000557356		Q6ZVQ6	151 aa		4.09	□□□□□ -1.75
PSEN1-222	ENST00000557356	NOTCH2NL	Q7Z3S9	236 aa		4.09	□□□□□ -1.75
PSEN1-222	ENST00000557356	MUC2	Q02817	5179 aa		4.08	□□□□□ -1.76
PSEN1-222	ENST00000557356	TRAV7	A0A075B6U4	112 aa		4.08	□□□□□ -1.76
PSEN1-222	ENST00000557356		H3BS24	57 aa		4.08	□□□□□ -1.76
PSEN1-222	ENST00000557356	PRR15	Q8IV56	129 aa		4.08	□□□□□ -1.76
PSEN1-222	ENST00000557356	C8orf17	Q9NRJ1	99 aa		4.08	□□□□□ -1.76
PSEN1-222	ENST00000557356		A0A087WVE0	104 aa		4.07	□□□□□ -1.76
PSEN1-222	ENST00000557356	BPY2	O14599	106 aa		4.07	□□□□□ -1.76
PSEN1-222	ENST00000557356	KRTAP19-2	Q3LHN2	52 aa		4.07	□□□□□ -1.76
PSEN1-222	ENST00000557356		Q8N9P0	234 aa	Predicted RBP	4.07	□□□□□ -1.76
PSEN1-222	ENST00000557356		M0R2T5	61 aa		4.06	□□□□□ -1.76
PSEN1-222	ENST00000557356	ZCCHC13	Q8WW36	166 aa	Known RBP	4.06	□□□□□ -1.76
PSEN1-222	ENST00000557356	RBM12B-AS1	Q9P1G2	102 aa		4.06	□□□□□ -1.76
PSEN1-222	ENST00000557356	MT1H	P80294	61 aa		4.05	□□□□□ -1.76
PSEN1-222	ENST00000557356	MUC17	Q685J3	4493 aa		4.04	□□□□□ -1.76
PSEN1-222	ENST00000557356	NDUFC1	O43677	76 aa		4.04	□□□□□ -1.76
PSEN1-222	ENST00000557356	TMEM254	Q8TBM7	123 aa		4.04	□□□□□ -1.76
PSEN1-222	ENST00000557356	hDV103S1	A0JD37	113 aa		4.03	□□□□□ -1.76
PSEN1-222	ENST00000557356	KLKP1	Q107X0	134 aa		4.03	□□□□□ -1.76
PSEN1-222	ENST00000557356	SVIP	Q8NHG7	77 aa		4.03	□□□□□ -1.76
PSEN1-222	ENST00000557356	MRPL34	Q9BQ48	92 aa	Known RBP	4.03	□□□□□ -1.76
PSEN1-222	ENST00000557356	FAM236D	A0A1B0GTK5	79 aa		4.02	□□□□□ -1.77
PSEN1-222	ENST00000557356	FAM236C	P0DP71	79 aa		4.02	□□□□□ -1.77
PSEN1-222	ENST00000557356	LCE1D	Q5T752	114 aa		4.02	□□□□□ -1.77
PSEN1-222	ENST00000557356		K7EQZ3	153 aa		4.01	□□□□□ -1.77
PSEN1-222	ENST00000557356	ATP5E	P56381	51 aa	Predicted RBP	4.01	□□□□□ -1.77
PSEN1-222	ENST00000557356	SPINK7	P58062	85 aa		4.01	□□□□□ -1.77
PSEN1-222	ENST00000557356	MMP24-AS1	A0A0U1RRL7	71 aa		4	□□□□□ -1.77
PSEN1-222	ENST00000557356	NDUFS5	O43920	106 aa		4	□□□□□ -1.77
PSEN1-222	ENST00000557356	CASC2	Q6XLA1	102 aa		3.99	□□□□□ -1.77
PSEN1-222	ENST00000557356	WFDC13	Q8IUB5	93 aa		3.98	□□□□□ -1.77
PSEN1-222	ENST00000557356	C20orf197	Q8N268	126 aa		3.98	□□□□□ -1.77
PSEN1-222	ENST00000557356	HRES1	P13985	223 aa		3.97	□□□□□ -1.77
PSEN1-222	ENST00000557356	KRTAP10-6	P60371	365 aa	Predicted RBP	3.97	□□□□□ -1.77
PSEN1-222	ENST00000557356	LCE4A	Q5TA78	99 aa		3.97	□□□□□ -1.77
PSEN1-222	ENST00000557356	MPLKIP	Q8TAP9	179 aa		3.97	□□□□□ -1.77
PSEN1-222	ENST00000557356	KRTAP4-7	Q9BYR0	210 aa		3.97	□□□□□ -1.77
PSEN1-222	ENST00000557356	SERP1	Q9Y6X1	66 aa		3.97	□□□□□ -1.77
PSEN1-222	ENST00000557356		H7BZZ5	65 aa		3.96	□□□□□ -1.78
PSEN1-222	ENST00000557356	KRTAP19-4	Q3LI73	84 aa		3.96	□□□□□ -1.78

Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms