RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 FRYLO94915 3013 aa1.15□□□□□ -2.22
LINC00643-204ENST00000555934 ABCA2Q9BZC7 2435 aa1.15□□□□□ -2.23
LINC00643-204ENST00000555934 DEFB130BP0DP73 79 aa1.15□□□□□ -2.23
LINC00643-204ENST00000555934 DEFB130AP0DP74 79 aa1.15□□□□□ -2.23
LINC00643-204ENST00000555934 DEFB104AQ8WTQ1 72 aa1.15□□□□□ -2.23
LINC00643-204ENST00000555934 NOP10Q9NPE3 64 aaKnown RBP1.15□□□□□ -2.23
LINC00643-204ENST00000555934 TOMM7Q9P0U1 55 aa1.15□□□□□ -2.23
LINC00643-204ENST00000555934 SPTBN2O15020 2390 aa1.15□□□□□ -2.23
LINC00643-204ENST00000555934 SPTA1P02549 2419 aa1.15□□□□□ -2.23
LINC00643-204ENST00000555934 ZZEF1O43149 2961 aa1.14□□□□□ -2.23
LINC00643-204ENST00000555934 PIEZO2Q9H5I5 2752 aa1.14□□□□□ -2.23
LINC00643-204ENST00000555934 GVINP1Q7Z2Y8 2422 aa1.14□□□□□ -2.23
LINC00643-204ENST00000555934 PCNX1Q96RV3 2341 aa1.14□□□□□ -2.23
LINC00643-204ENST00000555934 HTN1P15515 57 aa1.14□□□□□ -2.23
LINC00643-204ENST00000555934 DEFB136Q30KP8 78 aa1.14□□□□□ -2.23
LINC00643-204ENST00000555934 CFAP47Q6ZTR5 3102 aa1.14□□□□□ -2.23
LINC00643-204ENST00000555934 FRYQ5TBA9 3013 aa1.14□□□□□ -2.23
LINC00643-204ENST00000555934 SPTBN1Q01082 2364 aaKnown RBP1.13□□□□□ -2.23
LINC00643-204ENST00000555934 TLN1Q9Y490 2541 aaKnown RBP1.13□□□□□ -2.23
LINC00643-204ENST00000555934 HIVEP3Q5T1R4 2406 aa1.13□□□□□ -2.23
LINC00643-204ENST00000555934 CREBBPQ92793 2442 aa1.13□□□□□ -2.23
LINC00643-204ENST00000555934 LINC01556Q5JQF7 62 aa1.13□□□□□ -2.23
LINC00643-204ENST00000555934 DOPEY1Q5JWR5 2465 aa1.12□□□□□ -2.23
LINC00643-204ENST00000555934 SPART-AS1P0CW21 52 aa1.12□□□□□ -2.23
LINC00643-204ENST00000555934 AKAP6Q13023 2319 aa1.12□□□□□ -2.23
LINC00643-204ENST00000555934 DMDP11532 3685 aa1.12□□□□□ -2.23
LINC00643-204ENST00000555934 TNRC18O15417 2968 aaPredicted RBP1.11□□□□□ -2.23
LINC00643-204ENST00000555934 TTC28Q96AY4 2481 aa1.11□□□□□ -2.23
LINC00643-204ENST00000555934 ASPMQ8IZT6 3477 aa1.11□□□□□ -2.23
LINC00643-204ENST00000555934 A0A096LPF7 62 aa1.11□□□□□ -2.23
LINC00643-204ENST00000555934 WDR87Q6ZQQ6 2873 aa1.1□□□□□ -2.23
LINC00643-204ENST00000555934 RIF1Q5UIP0 2472 aaKnown RBP1.1□□□□□ -2.23
LINC00643-204ENST00000555934 ANKRD11Q6UB99 2663 aaPredicted RBP1.1□□□□□ -2.23
LINC00643-204ENST00000555934 KRTAP5-10Q6L8G5 202 aa1.1□□□□□ -2.23
LINC00643-204ENST00000555934 CLPSL2Q6UWE3 100 aa1.1□□□□□ -2.23
LINC00643-204ENST00000555934 SMG1Q96Q15 3661 aaKnown RBP1.1□□□□□ -2.23
LINC00643-204ENST00000555934 NBEAQ8NFP9 2946 aa1.1□□□□□ -2.23
LINC00643-204ENST00000555934 SPTAN1Q13813 2472 aaKnown RBP1.1□□□□□ -2.23
LINC00643-204ENST00000555934 ASH1LQ9NR48 2969 aaKnown RBP1.1□□□□□ -2.23
LINC00643-204ENST00000555934 MGAQ8IWI9 3026 aa1.09□□□□□ -2.23
LINC00643-204ENST00000555934 CSPG4Q6UVK1 2322 aa1.09□□□□□ -2.23
LINC00643-204ENST00000555934 BOD1L1Q8NFC6 3051 aa1.09□□□□□ -2.23
LINC00643-204ENST00000555934 MUC16Q8WXI7 14507 aa1.09□□□□□ -2.23
LINC00643-204ENST00000555934 DEFB135Q30KP9 77 aa1.09□□□□□ -2.23
LINC00643-204ENST00000555934 C2CD3Q4AC94 2353 aa1.09□□□□□ -2.23
LINC00643-204ENST00000555934 WNK1Q9H4A3 2382 aa1.09□□□□□ -2.23
LINC00643-204ENST00000555934 CSMD1Q96PZ7 3565 aa1.09□□□□□ -2.24
LINC00643-204ENST00000555934 RELNP78509 3460 aa1.09□□□□□ -2.24
LINC00643-204ENST00000555934 WFDC10BQ8IUB3 73 aa1.08□□□□□ -2.24
LINC00643-204ENST00000555934 DMXL2Q8TDJ6 3036 aa1.08□□□□□ -2.24
LINC00643-204ENST00000555934 ATMQ13315 3056 aa1.07□□□□□ -2.24
LINC00643-204ENST00000555934 NBASA2RRP1 2371 aa1.07□□□□□ -2.24
LINC00643-204ENST00000555934 TENM3Q9P273 2699 aa1.07□□□□□ -2.24
LINC00643-204ENST00000555934 ALMS1Q8TCU4 4167 aa1.07□□□□□ -2.24
LINC00643-204ENST00000555934 DMXL1Q9Y485 3027 aa1.07□□□□□ -2.24
LINC00643-204ENST00000555934 MMP24-AS1A0A0U1RRL7 71 aa1.07□□□□□ -2.24
LINC00643-204ENST00000555934 BDP1A6H8Y1 2624 aa1.07□□□□□ -2.24
LINC00643-204ENST00000555934 KALRNO60229 2985 aa1.07□□□□□ -2.24
LINC00643-204ENST00000555934 ZNF292O60281 2723 aa1.07□□□□□ -2.24
LINC00643-204ENST00000555934 ACACBO00763 2458 aa1.07□□□□□ -2.24
LINC00643-204ENST00000555934 DSPP15924 2871 aaKnown RBP1.06□□□□□ -2.24
LINC00643-204ENST00000555934 HRNRQ86YZ3 2850 aaPredicted RBP1.06□□□□□ -2.24
LINC00643-204ENST00000555934 USP24Q9UPU5 2620 aa1.06□□□□□ -2.24
LINC00643-204ENST00000555934 IGF2RP11717 2491 aa1.06□□□□□ -2.24
LINC00643-204ENST00000555934 NAV2Q8IVL1 2488 aa1.06□□□□□ -2.24
LINC00643-204ENST00000555934 SVEP1Q4LDE5 3571 aa1.05□□□□□ -2.24
LINC00643-204ENST00000555934 SPG11Q96JI7 2443 aa1.05□□□□□ -2.24
LINC00643-204ENST00000555934 LAMA5O15230 3695 aa1.05□□□□□ -2.24
LINC00643-204ENST00000555934 PTPN13Q12923 2485 aa1.05□□□□□ -2.24
LINC00643-204ENST00000555934 USP9YO00507 2555 aaPredicted RBP1.05□□□□□ -2.24
LINC00643-204ENST00000555934 ZNF462Q96JM2 2506 aa1.05□□□□□ -2.24
LINC00643-204ENST00000555934 COL12A1Q99715 3063 aa1.04□□□□□ -2.24
LINC00643-204ENST00000555934 USP9XQ93008 2570 aaPredicted RBP1.04□□□□□ -2.24
LINC00643-204ENST00000555934 UBR4Q5T4S7 5183 aa1.04□□□□□ -2.24
LINC00643-204ENST00000555934 CELSR1Q9NYQ6 3014 aa1.04□□□□□ -2.24
LINC00643-204ENST00000555934 DEFB4AO15263 64 aa1.04□□□□□ -2.24
LINC00643-204ENST00000555934 HTN3P15516 51 aa1.04□□□□□ -2.24
LINC00643-204ENST00000555934 MYO9AB2RTY4 2548 aa1.04□□□□□ -2.24
LINC00643-204ENST00000555934 TLN2Q9Y4G6 2542 aa1.04□□□□□ -2.24
LINC00643-204ENST00000555934 AKAP13Q12802 2813 aa1.03□□□□□ -2.24
LINC00643-204ENST00000555934 VPS13CQ709C8 3753 aa1.03□□□□□ -2.24
LINC00643-204ENST00000555934 A0A096LNI7 61 aa1.03□□□□□ -2.24
LINC00643-204ENST00000555934 S4R3F8 94 aa1.03□□□□□ -2.24
LINC00643-204ENST00000555934 CEP295Q9C0D2 2601 aa1.03□□□□□ -2.24
LINC00643-204ENST00000555934 DCHS2Q6V1P9 2916 aa1.03□□□□□ -2.24
LINC00643-204ENST00000555934 NCOR2Q9Y618 2525 aa1.03□□□□□ -2.25
LINC00643-204ENST00000555934 ANK3Q12955 4377 aaKnown RBP1.02□□□□□ -2.25
LINC00643-204ENST00000555934 PCLOQ9Y6V0 5065 aa1.02□□□□□ -2.25
LINC00643-204ENST00000555934 PRLHP81277 87 aa1.02□□□□□ -2.25
LINC00643-204ENST00000555934 PIEZO1Q92508 2521 aa1.02□□□□□ -2.25
LINC00643-204ENST00000555934 PRRC2CQ9Y520 2896 aaKnown RBP1.02□□□□□ -2.25
LINC00643-204ENST00000555934 RPS29P62273 56 aaKnown RBP1.01□□□□□ -2.25
LINC00643-204ENST00000555934 DNHD1Q96M86 4753 aa1.01□□□□□ -2.25
LINC00643-204ENST00000555934 CSMD2Q7Z408 3487 aa1.01□□□□□ -2.25
LINC00643-204ENST00000555934 AKAP9Q99996 3911 aa1.01□□□□□ -2.25
LINC00643-204ENST00000555934 MAST4O15021 2626 aa1.01□□□□□ -2.25
LINC00643-204ENST00000555934 SONP18583 2426 aaKnown RBP1□□□□□ -2.25
LINC00643-204ENST00000555934 LRRK2Q5S007 2527 aa0.99□□□□□ -2.25
LINC00643-204ENST00000555934 ZFYVE26Q68DK2 2539 aa0.99□□□□□ -2.25
LINC00643-204ENST00000555934 DNAH1Q9P2D7 4330 aa0.99□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 161.7 ms