RNA–Protein interactions for RNA: ENST00000549328.1

CHMP1A-207, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 1,003 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-207ENST00000549328 Q6ZQT0 140 aa9.43□□□□□ -0.9
CHMP1A-207ENST00000549328 ATXN8Q156A1 80 aa9.42□□□□□ -0.9
CHMP1A-207ENST00000549328 JMJD7-PLA2G4BH0Y9G9 81 aa9.41□□□□□ -0.9
CHMP1A-207ENST00000549328 A0A1B0GW54 56 aa9.4□□□□□ -0.9
CHMP1A-207ENST00000549328 MPLKIPQ8TAP9 179 aa9.39□□□□□ -0.91
CHMP1A-207ENST00000549328 HRES1P13985 223 aa9.38□□□□□ -0.91
CHMP1A-207ENST00000549328 RBM12B-AS1Q9P1G2 102 aa9.38□□□□□ -0.91
CHMP1A-207ENST00000549328 FAM236DA0A1B0GTK5 79 aa9.37□□□□□ -0.91
CHMP1A-207ENST00000549328 FAM236CP0DP71 79 aa9.37□□□□□ -0.91
CHMP1A-207ENST00000549328 NAA38Q9BRA0 125 aaKnown RBP9.37□□□□□ -0.91
CHMP1A-207ENST00000549328 KRTAP9-8Q9BYQ0 159 aa9.37□□□□□ -0.91
CHMP1A-207ENST00000549328 LOC110117498A0A087WWA1 95 aa9.36□□□□□ -0.91
CHMP1A-207ENST00000549328 NDUFB1O75438 58 aa9.36□□□□□ -0.91
CHMP1A-207ENST00000549328 PDE6GP18545 87 aa9.36□□□□□ -0.91
CHMP1A-207ENST00000549328 SMIM6P0DI80 62 aa9.35□□□□□ -0.91
CHMP1A-207ENST00000549328 LYRM7Q5U5X0 104 aa9.32□□□□□ -0.92
CHMP1A-207ENST00000549328 ZCCHC13Q8WW36 166 aaKnown RBP9.32□□□□□ -0.92
CHMP1A-207ENST00000549328 Q8N9P0 234 aaPredicted RBP9.31□□□□□ -0.92
CHMP1A-207ENST00000549328 A8MWP4 228 aa9.29□□□□□ -0.92
CHMP1A-207ENST00000549328 C14orf132Q9NPU4 83 aa9.27□□□□□ -0.93
CHMP1A-207ENST00000549328 MTURNQ8N3F0 131 aa9.26□□□□□ -0.93
CHMP1A-207ENST00000549328 C8orf17Q9NRJ1 99 aa9.26□□□□□ -0.93
CHMP1A-207ENST00000549328 TSTD3H0UI37 97 aa9.25□□□□□ -0.93
CHMP1A-207ENST00000549328 SPINK7P58062 85 aa9.25□□□□□ -0.93
CHMP1A-207ENST00000549328 IGKV3D-7A0A0C4DH55 119 aa9.24□□□□□ -0.93
CHMP1A-207ENST00000549328 NREPQ16612 68 aa9.22□□□□□ -0.93
CHMP1A-207ENST00000549328 MT2AP02795 61 aa9.21□□□□□ -0.94
CHMP1A-207ENST00000549328 PRR15Q8IV56 129 aa9.21□□□□□ -0.94
CHMP1A-207ENST00000549328 BATFQ16520 125 aa9.2□□□□□ -0.94
CHMP1A-207ENST00000549328 Q6ZVQ6 151 aa9.2□□□□□ -0.94
CHMP1A-207ENST00000549328 C9orf118A6NHY6 69 aa9.16□□□□□ -0.94
CHMP1A-207ENST00000549328 H3BT86 120 aa9.16□□□□□ -0.94
CHMP1A-207ENST00000549328 MT1FP04733 61 aa9.13□□□□□ -0.95
CHMP1A-207ENST00000549328 A0A1W2PPM0 123 aa9.12□□□□□ -0.95
CHMP1A-207ENST00000549328 TMEM254Q8TBM7 123 aa9.12□□□□□ -0.95
CHMP1A-207ENST00000549328 MRPL34Q9BQ48 92 aaKnown RBP9.12□□□□□ -0.95
CHMP1A-207ENST00000549328 MMP24-AS1A0A0U1RRL7 71 aa9.11□□□□□ -0.95
CHMP1A-207ENST00000549328 TAX1BP3O14907 124 aa9.11□□□□□ -0.95
CHMP1A-207ENST00000549328 KRTAP10-10P60014 251 aa9.1□□□□□ -0.95
CHMP1A-207ENST00000549328 WFDC13Q8IUB5 93 aa9.1□□□□□ -0.95
CHMP1A-207ENST00000549328 LOC105371267A0A1B0GV96 52 aa9.07□□□□□ -0.96
CHMP1A-207ENST00000549328 hDV103S1A0JD37 113 aa9.07□□□□□ -0.96
CHMP1A-207ENST00000549328 K7EQZ3 153 aa9.07□□□□□ -0.96
CHMP1A-207ENST00000549328 KRTAP9-3Q9BYQ3 159 aa9.07□□□□□ -0.96
CHMP1A-207ENST00000549328 BPY2O14599 106 aa9.04□□□□□ -0.96
CHMP1A-207ENST00000549328 LCE2BO14633 110 aa9.03□□□□□ -0.96
CHMP1A-207ENST00000549328 USH2AO75445 5202 aa9.01□□□□□ -0.97
CHMP1A-207ENST00000549328 NDUFS5O43920 106 aa9.01□□□□□ -0.97
CHMP1A-207ENST00000549328 SPCS1Q9Y6A9 102 aa8.97□□□□□ -0.97
CHMP1A-207ENST00000549328 SSPOA2VEC9 5147 aa8.95□□□□□ -0.98
CHMP1A-207ENST00000549328 H1FX-AS1Q4G0G2 97 aa8.94□□□□□ -0.98
CHMP1A-207ENST00000549328 SMCPP49901 116 aaPredicted RBP8.93□□□□□ -0.98
CHMP1A-207ENST00000549328 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.92□□□□□ -0.98
CHMP1A-207ENST00000549328 Q5W150 140 aa8.92□□□□□ -0.98
CHMP1A-207ENST00000549328 CASC2Q6XLA1 102 aa8.92□□□□□ -0.98
CHMP1A-207ENST00000549328 C7orf65Q6ZTY9 151 aa8.91□□□□□ -0.98
CHMP1A-207ENST00000549328 Q8N9L7 120 aa8.91□□□□□ -0.98
CHMP1A-207ENST00000549328 IGKV2D-30A0A075B6S6 120 aa8.9□□□□□ -0.98
CHMP1A-207ENST00000549328 IGKV2-30P06310 120 aa8.9□□□□□ -0.98
CHMP1A-207ENST00000549328 KRTAP19-1Q8IUB9 90 aa8.89□□□□□ -0.99
CHMP1A-207ENST00000549328 COL5A1-AS1Q5SY13 56 aa8.88□□□□□ -0.99
CHMP1A-207ENST00000549328 HCG22E2RYF7 251 aa8.87□□□□□ -0.99
CHMP1A-207ENST00000549328 CXCL6P80162 114 aa8.85□□□□□ -0.99
CHMP1A-207ENST00000549328 UBL5Q9BZL1 73 aa8.85□□□□□ -0.99
CHMP1A-207ENST00000549328 PRO0461Q9UI25 63 aa8.85□□□□□ -0.99
CHMP1A-207ENST00000549328 KRTAP9-7A8MTY7 169 aa8.84□□□□□ -0.99
CHMP1A-207ENST00000549328 LINC00846Q9NV44 126 aa8.84□□□□□ -0.99
CHMP1A-207ENST00000549328 K7EP34 96 aa8.81□□□□□ -1
CHMP1A-207ENST00000549328 FCGBPQ9Y6R7 5405 aaPredicted RBP8.8□□□□□ -1
CHMP1A-207ENST00000549328 C4orf26Q17RF5 130 aa8.76□□□□□ -1.01
CHMP1A-207ENST00000549328 KRTAP19-6Q3LI70 58 aa8.75□□□□□ -1.01
CHMP1A-207ENST00000549328 GTF2H5Q6ZYL4 71 aa8.71□□□□□ -1.02
CHMP1A-207ENST00000549328 F8W1H4 67 aa8.68□□□□□ -1.02
CHMP1A-207ENST00000549328 TP53AIP1Q9HCN2 124 aa8.67□□□□□ -1.02
CHMP1A-207ENST00000549328 KRTAP3-1Q9BYR8 98 aa8.64□□□□□ -1.03
CHMP1A-207ENST00000549328 ETDBQ3ZM63 59 aa8.63□□□□□ -1.03
CHMP1A-207ENST00000549328 C5orf47Q569G3 176 aa8.6□□□□□ -1.03
CHMP1A-207ENST00000549328 C1orf64Q8NEQ6 169 aa8.6□□□□□ -1.03
CHMP1A-207ENST00000549328 S4R3F8 94 aa8.58□□□□□ -1.04
CHMP1A-207ENST00000549328 CSAG1Q6PB30 78 aa8.56□□□□□ -1.04
CHMP1A-207ENST00000549328 PCP4L1A6NKN8 68 aa8.54□□□□□ -1.04
CHMP1A-207ENST00000549328 MACF1Q9UPN3 7388 aaKnown RBP8.53□□□□□ -1.04
CHMP1A-207ENST00000549328 FAM236AA0A1B0GUQ0 79 aa8.52□□□□□ -1.05
CHMP1A-207ENST00000549328 FAM236BA0A1B0GV22 79 aa8.52□□□□□ -1.05
CHMP1A-207ENST00000549328 LCA10Q71F78 164 aa8.52□□□□□ -1.05
CHMP1A-207ENST00000549328 ACYP1P07311 99 aa8.49□□□□□ -1.05
CHMP1A-207ENST00000549328 CYP4F30PQ9H0H9 118 aa8.49□□□□□ -1.05
CHMP1A-207ENST00000549328 TRAV22A0A0B4J277 110 aa8.45□□□□□ -1.06
CHMP1A-207ENST00000549328 LOC101927531A0A1B0GV80 90 aa8.43□□□□□ -1.06
CHMP1A-207ENST00000549328 FAM240AA0A1B0GVK7 77 aa8.43□□□□□ -1.06
CHMP1A-207ENST00000549328 SPRR2GQ9BYE4 73 aa8.43□□□□□ -1.06
CHMP1A-207ENST00000549328 ATP5EP2Q5VTU8 51 aa8.41□□□□□ -1.06
CHMP1A-207ENST00000549328 KRTAP3-3Q9BYR6 98 aa8.41□□□□□ -1.06
CHMP1A-207ENST00000549328 SYNE2Q8WXH0 6885 aaKnown RBP8.39□□□□□ -1.07
CHMP1A-207ENST00000549328 KRTAP19-8Q3LI54 63 aa8.38□□□□□ -1.07
CHMP1A-207ENST00000549328 MT1BP07438 61 aa8.37□□□□□ -1.07
CHMP1A-207ENST00000549328 KLKP1Q107X0 134 aa8.37□□□□□ -1.07
CHMP1A-207ENST00000549328 Q5VV11 94 aa8.37□□□□□ -1.07
CHMP1A-207ENST00000549328 KRTAP6-3Q3LI67 103 aa8.36□□□□□ -1.07
CHMP1A-207ENST00000549328 UQCRQO14949 82 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms