RNA–Protein interactions for RNA: ENST00000545425.2

FOXA1-202, Transcript of forkhead box A1, humanhuman

TSL 2

Gene FOXA1, Length 1,806 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-202ENST00000545425 A0A1B0GVY2 172 aa13.87□□□□□ -0.19
FOXA1-202ENST00000545425 IGLV7-43P04211 117 aa13.85□□□□□ -0.19
FOXA1-202ENST00000545425 PRR4Q16378 134 aa13.85□□□□□ -0.19
FOXA1-202ENST00000545425 MRPL34Q9BQ48 92 aaKnown RBP13.85□□□□□ -0.19
FOXA1-202ENST00000545425 HECTD4Q9Y4D8 3996 aa13.85□□□□□ -0.19
FOXA1-202ENST00000545425 FAT2Q9NYQ8 4349 aa13.84□□□□□ -0.19
FOXA1-202ENST00000545425 DNAH17Q9UFH2 4485 aa13.83□□□□□ -0.2
FOXA1-202ENST00000545425 SSBP3-AS1Q7Z2R9 100 aa13.83□□□□□ -0.2
FOXA1-202ENST00000545425 BRK1Q8WUW1 75 aa13.82□□□□□ -0.2
FOXA1-202ENST00000545425 IGHV6-1A0A0B4J1U7 121 aa13.8□□□□□ -0.2
FOXA1-202ENST00000545425 LIMD2Q9BT23 127 aa13.78□□□□□ -0.2
FOXA1-202ENST00000545425 C8orf87E5RJ46 101 aa13.74□□□□□ -0.21
FOXA1-202ENST00000545425 NDUFS5O43920 106 aa13.72□□□□□ -0.21
FOXA1-202ENST00000545425 SRRM2Q9UQ35 2752 aaKnown RBP13.71□□□□□ -0.21
FOXA1-202ENST00000545425 PKD1P98161 4303 aa13.7□□□□□ -0.22
FOXA1-202ENST00000545425 LOC101927531A0A1B0GV80 90 aa13.7□□□□□ -0.22
FOXA1-202ENST00000545425 ANAPC11Q9NYG5 84 aa13.69□□□□□ -0.22
FOXA1-202ENST00000545425 PKHD1P08F94 4074 aa13.68□□□□□ -0.22
FOXA1-202ENST00000545425 COA5Q86WW8 74 aa13.67□□□□□ -0.22
FOXA1-202ENST00000545425 Q8N9P0 234 aaPredicted RBP13.67□□□□□ -0.22
FOXA1-202ENST00000545425 DNAH11Q96DT5 4516 aa13.66□□□□□ -0.22
FOXA1-202ENST00000545425 KIAA1109Q2LD37 5005 aa13.62□□□□□ -0.23
FOXA1-202ENST00000545425 PSPHP1O15172 72 aa13.62□□□□□ -0.23
FOXA1-202ENST00000545425 PCOTHQ58A44 107 aa13.62□□□□□ -0.23
FOXA1-202ENST00000545425 CIRBP-AS1Q8TBR5 109 aa13.62□□□□□ -0.23
FOXA1-202ENST00000545425 DYNC1H1Q14204 4646 aaKnown RBP13.6□□□□□ -0.23
FOXA1-202ENST00000545425 HERC2O95714 4834 aa13.59□□□□□ -0.23
FOXA1-202ENST00000545425 A8MUN3 132 aa13.57□□□□□ -0.24
FOXA1-202ENST00000545425 Q6ZSA8 131 aa13.57□□□□□ -0.24
FOXA1-202ENST00000545425 A0A087X002 238 aa13.56□□□□□ -0.24
FOXA1-202ENST00000545425 NOTCH2NLQ7Z3S9 236 aa13.56□□□□□ -0.24
FOXA1-202ENST00000545425 KRTAP10-2P60368 255 aa13.55□□□□□ -0.24
FOXA1-202ENST00000545425 Q5VV11 94 aa13.55□□□□□ -0.24
FOXA1-202ENST00000545425 KRTAP13-3Q3SY46 172 aa13.55□□□□□ -0.24
FOXA1-202ENST00000545425 SPINK6Q6UWN8 80 aa13.55□□□□□ -0.24
FOXA1-202ENST00000545425 DNAH8Q96JB1 4490 aa13.54□□□□□ -0.24
FOXA1-202ENST00000545425 Q75L30 129 aa13.5□□□□□ -0.25
FOXA1-202ENST00000545425 LINC01558Q9Y6Z2 57 aa13.48□□□□□ -0.25
FOXA1-202ENST00000545425 FAM229AH3BQW9 127 aa13.48□□□□□ -0.25
FOXA1-202ENST00000545425 LINC00313P59037 77 aa13.48□□□□□ -0.25
FOXA1-202ENST00000545425 PRR15LQ9BU68 103 aa13.48□□□□□ -0.25
FOXA1-202ENST00000545425 LRP1BQ9NZR2 4599 aa13.45□□□□□ -0.26
FOXA1-202ENST00000545425 HRES1P13985 223 aa13.43□□□□□ -0.26
FOXA1-202ENST00000545425 CHKB-CPT1BH3BT56 60 aa13.43□□□□□ -0.26
FOXA1-202ENST00000545425 Q5W150 140 aa13.42□□□□□ -0.26
FOXA1-202ENST00000545425 RYR1P21817 5038 aa13.42□□□□□ -0.26
FOXA1-202ENST00000545425 KRTAP13-2Q52LG2 175 aa13.41□□□□□ -0.26
FOXA1-202ENST00000545425 ACYP2P14621 99 aa13.39□□□□□ -0.27
FOXA1-202ENST00000545425 KRTAP10-1P60331 282 aa13.37□□□□□ -0.27
FOXA1-202ENST00000545425 DNAH5Q8TE73 4624 aa13.37□□□□□ -0.27
FOXA1-202ENST00000545425 HSPG2P98160 4391 aa13.34□□□□□ -0.27
FOXA1-202ENST00000545425 Q8N1X5 172 aa13.32□□□□□ -0.28
FOXA1-202ENST00000545425 KRTAP1-4P0C5Y4 121 aa13.31□□□□□ -0.28
FOXA1-202ENST00000545425 DMAC1Q96GE9 116 aa13.31□□□□□ -0.28
FOXA1-202ENST00000545425 APOBP04114 4563 aaKnown RBP13.31□□□□□ -0.28
FOXA1-202ENST00000545425 PCLOQ9Y6V0 5065 aa13.3□□□□□ -0.28
FOXA1-202ENST00000545425 IGKV2-30P06310 120 aa13.29□□□□□ -0.28
FOXA1-202ENST00000545425 SPAG11AQ6PDA7 123 aa13.28□□□□□ -0.28
FOXA1-202ENST00000545425 C4orf48Q5BLP8 95 aa13.27□□□□□ -0.28
FOXA1-202ENST00000545425 A6NED7 52 aa13.27□□□□□ -0.29
FOXA1-202ENST00000545425 KRTAP16-1A8MUX0 517 aa13.27□□□□□ -0.29
FOXA1-202ENST00000545425 SPINK1P00995 79 aa13.26□□□□□ -0.29
FOXA1-202ENST00000545425 ATP11AUNQ6ZP68 121 aa13.25□□□□□ -0.29
FOXA1-202ENST00000545425 KRTAP17-1Q9BYP8 105 aa13.25□□□□□ -0.29
FOXA1-202ENST00000545425 KRTAP4-5Q9BYR2 181 aa13.25□□□□□ -0.29
FOXA1-202ENST00000545425 RPS29P62273 56 aaKnown RBP13.24□□□□□ -0.29
FOXA1-202ENST00000545425 CDC42SE1Q9NRR8 79 aa13.24□□□□□ -0.29
FOXA1-202ENST00000545425 PRR26Q8N8Z3 221 aa13.2□□□□□ -0.3
FOXA1-202ENST00000545425 PMAIP1Q13794 54 aa13.18□□□□□ -0.3
FOXA1-202ENST00000545425 TYMSOSQ8TAI1 123 aa13.18□□□□□ -0.3
FOXA1-202ENST00000545425 ABCA13Q86UQ4 5058 aa13.18□□□□□ -0.3
FOXA1-202ENST00000545425 PLA2G1BP04054 148 aaKnown RBP13.17□□□□□ -0.3
FOXA1-202ENST00000545425 LCA10Q71F78 164 aa13.15□□□□□ -0.3
FOXA1-202ENST00000545425 SMR3BP02814 79 aaPredicted RBP13.12□□□□□ -0.31
FOXA1-202ENST00000545425 Q5VSD8 79 aa13.11□□□□□ -0.31
FOXA1-202ENST00000545425 FAT1Q14517 4588 aa13.06□□□□□ -0.32
FOXA1-202ENST00000545425 LINC00304Q8N9R0 145 aa13.03□□□□□ -0.32
FOXA1-202ENST00000545425 A8MU10 97 aa13.02□□□□□ -0.32
FOXA1-202ENST00000545425 RETNLBQ9BQ08 111 aa13□□□□□ -0.33
FOXA1-202ENST00000545425 SPTSSBQ8NFR3 76 aa12.99□□□□□ -0.33
FOXA1-202ENST00000545425 IGKV2D-30A0A075B6S6 120 aa12.98□□□□□ -0.33
FOXA1-202ENST00000545425 SPINK7P58062 85 aa12.97□□□□□ -0.33
FOXA1-202ENST00000545425 C7orf65Q6ZTY9 151 aa12.95□□□□□ -0.34
FOXA1-202ENST00000545425 A0A1B0GU69 56 aa12.93□□□□□ -0.34
FOXA1-202ENST00000545425 A6NN06 94 aa12.92□□□□□ -0.34
FOXA1-202ENST00000545425 KTN1-AS1Q86SY8 53 aa12.92□□□□□ -0.34
FOXA1-202ENST00000545425 VPS13BQ7Z7G8 4022 aa12.89□□□□□ -0.35
FOXA1-202ENST00000545425 FLG2Q5D862 2391 aaPredicted RBP12.83□□□□□ -0.36
FOXA1-202ENST00000545425 KRTAP10-4P60372 401 aaPredicted RBP12.81□□□□□ -0.36
FOXA1-202ENST00000545425 C20orf166-AS1Q96NR2 134 aa12.79□□□□□ -0.36
FOXA1-202ENST00000545425 DMBT1Q9UGM3 2413 aaPredicted RBP12.79□□□□□ -0.36
FOXA1-202ENST00000545425 A8MUU9 505 aa12.78□□□□□ -0.36
FOXA1-202ENST00000545425 SPATA8Q6RVD6 105 aa12.78□□□□□ -0.36
FOXA1-202ENST00000545425 MYCBP2O75592 4640 aa12.77□□□□□ -0.37
FOXA1-202ENST00000545425 UQCR11O14957 56 aa12.76□□□□□ -0.37
FOXA1-202ENST00000545425 SEC61GP60059 68 aa12.72□□□□□ -0.37
FOXA1-202ENST00000545425 J3QL48 77 aa12.72□□□□□ -0.37
FOXA1-202ENST00000545425 MIR22HGQ0VDD5 57 aa12.66□□□□□ -0.38
FOXA1-202ENST00000545425 HERC1Q15751 4861 aa12.65□□□□□ -0.38
FOXA1-202ENST00000545425 LRP1Q07954 4544 aaKnown RBP12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms