RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 BATFQ16520 125 aa6.47□□□□□ -1.37
USP28-212ENST00000544750 RBM3P98179 157 aaKnown RBP6.46□□□□□ -1.38
USP28-212ENST00000544750 SYNE2Q8WXH0 6885 aaKnown RBP6.45□□□□□ -1.38
USP28-212ENST00000544750 C20orf166-AS1Q96NR2 134 aa6.44□□□□□ -1.38
USP28-212ENST00000544750 LINC00472Q9H8W2 130 aa6.44□□□□□ -1.38
USP28-212ENST00000544750 TAX1BP3O14907 124 aa6.43□□□□□ -1.38
USP28-212ENST00000544750 DSCR8Q96T75 97 aa6.43□□□□□ -1.38
USP28-212ENST00000544750 SIGMAR1Q99720 223 aa6.43□□□□□ -1.38
USP28-212ENST00000544750 C9orf118A6NHY6 69 aa6.42□□□□□ -1.38
USP28-212ENST00000544750 A8MUU9 505 aa6.42□□□□□ -1.38
USP28-212ENST00000544750 KRTAP19-6Q3LI70 58 aa6.42□□□□□ -1.38
USP28-212ENST00000544750 LYRM7Q5U5X0 104 aa6.42□□□□□ -1.38
USP28-212ENST00000544750 TRBV20-1A0A075B6N2 111 aa6.41□□□□□ -1.38
USP28-212ENST00000544750 IGKV4-1P06312 121 aa6.41□□□□□ -1.38
USP28-212ENST00000544750 DSCR10P59022 87 aa6.41□□□□□ -1.38
USP28-212ENST00000544750 DEFB116Q30KQ4 102 aa6.41□□□□□ -1.38
USP28-212ENST00000544750 VPS25Q9BRG1 176 aa6.41□□□□□ -1.38
USP28-212ENST00000544750 C9JAW5 83 aa6.4□□□□□ -1.38
USP28-212ENST00000544750 KRTAP10-10P60014 251 aa6.4□□□□□ -1.38
USP28-212ENST00000544750 Q6ZQT0 140 aa6.4□□□□□ -1.38
USP28-212ENST00000544750 LOC110117498A0A087WWA1 95 aa6.39□□□□□ -1.39
USP28-212ENST00000544750 KRTAP16-1A8MUX0 517 aa6.39□□□□□ -1.39
USP28-212ENST00000544750 NOTCH2NLQ7Z3S9 236 aa6.39□□□□□ -1.39
USP28-212ENST00000544750 A0A1W2PPM0 123 aa6.38□□□□□ -1.39
USP28-212ENST00000544750 JMJD7-PLA2G4BH0Y9G9 81 aa6.38□□□□□ -1.39
USP28-212ENST00000544750 MPLKIPQ8TAP9 179 aa6.37□□□□□ -1.39
USP28-212ENST00000544750 KRTAP6-3Q3LI67 103 aa6.36□□□□□ -1.39
USP28-212ENST00000544750 C14orf132Q9NPU4 83 aa6.36□□□□□ -1.39
USP28-212ENST00000544750 LINC00313P59037 77 aa6.35□□□□□ -1.39
USP28-212ENST00000544750 MTURNQ8N3F0 131 aa6.35□□□□□ -1.39
USP28-212ENST00000544750 LINC00846Q9NV44 126 aa6.35□□□□□ -1.39
USP28-212ENST00000544750 H3BT86 120 aa6.33□□□□□ -1.4
USP28-212ENST00000544750 C21orf62-AS1Q17RA5 79 aa6.33□□□□□ -1.4
USP28-212ENST00000544750 IGHV6-1A0A0B4J1U7 121 aa6.32□□□□□ -1.4
USP28-212ENST00000544750 A0A1B0GVX0 72 aa6.32□□□□□ -1.4
USP28-212ENST00000544750 PDE6GP18545 87 aa6.32□□□□□ -1.4
USP28-212ENST00000544750 FAM236DA0A1B0GTK5 79 aa6.31□□□□□ -1.4
USP28-212ENST00000544750 A0A1B0GW54 56 aa6.31□□□□□ -1.4
USP28-212ENST00000544750 FAM236CP0DP71 79 aa6.31□□□□□ -1.4
USP28-212ENST00000544750 HRES1P13985 223 aa6.31□□□□□ -1.4
USP28-212ENST00000544750 C8orf87E5RJ46 101 aa6.29□□□□□ -1.4
USP28-212ENST00000544750 J3KT08 172 aa6.29□□□□□ -1.4
USP28-212ENST00000544750 SPCS1Q9Y6A9 102 aa6.29□□□□□ -1.4
USP28-212ENST00000544750 COL5A1-AS1Q5SY13 56 aa6.28□□□□□ -1.4
USP28-212ENST00000544750 IGKV3D-7A0A0C4DH55 119 aa6.25□□□□□ -1.41
USP28-212ENST00000544750 A8MWP4 228 aa6.25□□□□□ -1.41
USP28-212ENST00000544750 RBM12B-AS1Q9P1G2 102 aa6.25□□□□□ -1.41
USP28-212ENST00000544750 PRO0461Q9UI25 63 aa6.24□□□□□ -1.41
USP28-212ENST00000544750 K7EP34 96 aa6.22□□□□□ -1.41
USP28-212ENST00000544750 NREPQ16612 68 aa6.22□□□□□ -1.41
USP28-212ENST00000544750 C8orf17Q9NRJ1 99 aa6.22□□□□□ -1.41
USP28-212ENST00000544750 NDUFB1O75438 58 aa6.21□□□□□ -1.42
USP28-212ENST00000544750 Q8N9P0 234 aaPredicted RBP6.21□□□□□ -1.42
USP28-212ENST00000544750 PCP4L1A6NKN8 68 aa6.2□□□□□ -1.42
USP28-212ENST00000544750 PRR15Q8IV56 129 aa6.2□□□□□ -1.42
USP28-212ENST00000544750 MMP24-AS1A0A0U1RRL7 71 aa6.18□□□□□ -1.42
USP28-212ENST00000544750 ZCCHC13Q8WW36 166 aaKnown RBP6.18□□□□□ -1.42
USP28-212ENST00000544750 K7EQZ3 153 aa6.17□□□□□ -1.42
USP28-212ENST00000544750 Q6ZVQ6 151 aa6.16□□□□□ -1.42
USP28-212ENST00000544750 MUC12Q9UKN1 5478 aa6.14□□□□□ -1.43
USP28-212ENST00000544750 BPY2O14599 106 aa6.12□□□□□ -1.43
USP28-212ENST00000544750 TMEM254Q8TBM7 123 aa6.12□□□□□ -1.43
USP28-212ENST00000544750 GTF2H5Q6ZYL4 71 aa6.11□□□□□ -1.43
USP28-212ENST00000544750 MRPL34Q9BQ48 92 aaKnown RBP6.11□□□□□ -1.43
USP28-212ENST00000544750 NEBP20929 6669 aa6.1□□□□□ -1.43
USP28-212ENST00000544750 hDV103S1A0JD37 113 aa6.1□□□□□ -1.43
USP28-212ENST00000544750 Q8N9L7 120 aa6.1□□□□□ -1.43
USP28-212ENST00000544750 SPINK7P58062 85 aa6.09□□□□□ -1.43
USP28-212ENST00000544750 F8W1H4 67 aa6.08□□□□□ -1.44
USP28-212ENST00000544750 ETDBQ3ZM63 59 aa6.06□□□□□ -1.44
USP28-212ENST00000544750 KRTAP20-1Q3LI63 56 aa6.05□□□□□ -1.44
USP28-212ENST00000544750 UBL5Q9BZL1 73 aa6.05□□□□□ -1.44
USP28-212ENST00000544750 WFDC13Q8IUB5 93 aa6.04□□□□□ -1.44
USP28-212ENST00000544750 NDUFS5O43920 106 aa6.02□□□□□ -1.45
USP28-212ENST00000544750 Q5W150 140 aa6.02□□□□□ -1.45
USP28-212ENST00000544750 CASC2Q6XLA1 102 aa6.02□□□□□ -1.45
USP28-212ENST00000544750 HCG22E2RYF7 251 aa5.98□□□□□ -1.45
USP28-212ENST00000544750 CXCL6P80162 114 aa5.95□□□□□ -1.46
USP28-212ENST00000544750 IGKV2D-30A0A075B6S6 120 aa5.93□□□□□ -1.46
USP28-212ENST00000544750 IGKV2-30P06310 120 aa5.93□□□□□ -1.46
USP28-212ENST00000544750 KRTAP5-9P26371 169 aa5.93□□□□□ -1.46
USP28-212ENST00000544750 C7orf65Q6ZTY9 151 aa5.93□□□□□ -1.46
USP28-212ENST00000544750 FAM240AA0A1B0GVK7 77 aa5.9□□□□□ -1.46
USP28-212ENST00000544750 A6NN06 94 aa5.9□□□□□ -1.46
USP28-212ENST00000544750 A0A1B0GV90 55 aa5.89□□□□□ -1.47
USP28-212ENST00000544750 LOC100996750A0A140TA64 210 aa5.88□□□□□ -1.47
USP28-212ENST00000544750 KMT2DO14686 5537 aa5.88□□□□□ -1.47
USP28-212ENST00000544750 ACYP1P07311 99 aa5.88□□□□□ -1.47
USP28-212ENST00000544750 MT1BP07438 61 aa5.88□□□□□ -1.47
USP28-212ENST00000544750 KRTAP4-6Q9BYQ5 205 aa5.88□□□□□ -1.47
USP28-212ENST00000544750 MDN1Q9NU22 5596 aa5.87□□□□□ -1.47
USP28-212ENST00000544750 H1FX-AS1Q4G0G2 97 aa5.87□□□□□ -1.47
USP28-212ENST00000544750 C4orf26Q17RF5 130 aa5.84□□□□□ -1.47
USP28-212ENST00000544750 TP53AIP1Q9HCN2 124 aa5.84□□□□□ -1.47
USP28-212ENST00000544750 ATP5EP2Q5VTU8 51 aa5.82□□□□□ -1.48
USP28-212ENST00000544750 KRTAP10-5P60370 271 aa5.81□□□□□ -1.48
USP28-212ENST00000544750 KRTAP19-8Q3LI54 63 aa5.8□□□□□ -1.48
USP28-212ENST00000544750 KRTAP3-1Q9BYR8 98 aa5.8□□□□□ -1.48
USP28-212ENST00000544750 KRTAP2-3P0C7H8 128 aa5.79□□□□□ -1.48
USP28-212ENST00000544750 KRTAP2-4Q9BYR9 128 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms