RNA–Protein interactions for RNA: ENST00000542786.1

LDB3-207, Transcript of LIM domain binding 3, humanhuman

TSL 2 BASIC

Gene LDB3, Length 1,889 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-207ENST00000542786 CDK2AP2O75956 126 aa8.16□□□□□ -1.1
LDB3-207ENST00000542786 ATP5EP56381 51 aaPredicted RBP8.16□□□□□ -1.1
LDB3-207ENST00000542786 SPINK6Q6UWN8 80 aa8.16□□□□□ -1.1
LDB3-207ENST00000542786 H0Y9P7 68 aa8.15□□□□□ -1.11
LDB3-207ENST00000542786 C1orf195Q5TG92 126 aa8.14□□□□□ -1.11
LDB3-207ENST00000542786 PLA2G1BP04054 148 aaKnown RBP8.13□□□□□ -1.11
LDB3-207ENST00000542786 MP68P56378 58 aa8.13□□□□□ -1.11
LDB3-207ENST00000542786 SERP1Q9Y6X1 66 aa8.13□□□□□ -1.11
LDB3-207ENST00000542786 APOBP04114 4563 aaKnown RBP8.13□□□□□ -1.11
LDB3-207ENST00000542786 H3BPC8 53 aa8.13□□□□□ -1.11
LDB3-207ENST00000542786 SMR3BP02814 79 aaPredicted RBP8.12□□□□□ -1.11
LDB3-207ENST00000542786 MRPL34Q9BQ48 92 aaKnown RBP8.12□□□□□ -1.11
LDB3-207ENST00000542786 TRAV22A0A0B4J277 110 aa8.11□□□□□ -1.11
LDB3-207ENST00000542786 LINC00208Q96KT6 92 aa8.11□□□□□ -1.11
LDB3-207ENST00000542786 TP53AIP1Q9HCN2 124 aa8.11□□□□□ -1.11
LDB3-207ENST00000542786 TYMSOSQ8TAI1 123 aa8.09□□□□□ -1.12
LDB3-207ENST00000542786 RYR3Q15413 4870 aa8.08□□□□□ -1.12
LDB3-207ENST00000542786 C8orf87E5RJ46 101 aa8.08□□□□□ -1.12
LDB3-207ENST00000542786 PRR26Q8N8Z3 221 aa8.06□□□□□ -1.12
LDB3-207ENST00000542786 LIMD2Q9BT23 127 aa8.06□□□□□ -1.12
LDB3-207ENST00000542786 KRTAP13-3Q3SY46 172 aa8.06□□□□□ -1.12
LDB3-207ENST00000542786 C1orf64Q8NEQ6 169 aa8.06□□□□□ -1.12
LDB3-207ENST00000542786 SPINK1P00995 79 aa8.04□□□□□ -1.12
LDB3-207ENST00000542786 CYP4F30PQ9H0H9 118 aa8.02□□□□□ -1.12
LDB3-207ENST00000542786 KRTAP16-1A8MUX0 517 aa8.02□□□□□ -1.13
LDB3-207ENST00000542786 NDUFS5O43920 106 aa8.02□□□□□ -1.13
LDB3-207ENST00000542786 RPS29P62273 56 aaKnown RBP8.02□□□□□ -1.13
LDB3-207ENST00000542786 FAT1Q14517 4588 aa8.02□□□□□ -1.13
LDB3-207ENST00000542786 LINC00304Q8N9R0 145 aa8.01□□□□□ -1.13
LDB3-207ENST00000542786 LINC00313P59037 77 aa8□□□□□ -1.13
LDB3-207ENST00000542786 C4orf48Q5BLP8 95 aa8□□□□□ -1.13
LDB3-207ENST00000542786 Q5W150 140 aa8□□□□□ -1.13
LDB3-207ENST00000542786 SPANXA2-OT1Q8N9U9 137 aa8□□□□□ -1.13
LDB3-207ENST00000542786 Q8N9P0 234 aaPredicted RBP7.99□□□□□ -1.13
LDB3-207ENST00000542786 PKHD1L1Q86WI1 4243 aa7.97□□□□□ -1.13
LDB3-207ENST00000542786 SPAG11AQ6PDA7 123 aa7.97□□□□□ -1.13
LDB3-207ENST00000542786 FP248Q71RG6 208 aaPredicted RBP7.96□□□□□ -1.14
LDB3-207ENST00000542786 SMIM26A0A096LP01 95 aa7.95□□□□□ -1.14
LDB3-207ENST00000542786 PRR4Q16378 134 aa7.95□□□□□ -1.14
LDB3-207ENST00000542786 IGLV7-46A0A075B6I9 117 aa7.92□□□□□ -1.14
LDB3-207ENST00000542786 LOC101927531A0A1B0GV80 90 aa7.91□□□□□ -1.14
LDB3-207ENST00000542786 PCOTHQ58A44 107 aa7.9□□□□□ -1.14
LDB3-207ENST00000542786 FAM229AH3BQW9 127 aa7.88□□□□□ -1.15
LDB3-207ENST00000542786 KRTAP17-1Q9BYP8 105 aa7.87□□□□□ -1.15
LDB3-207ENST00000542786 C4orf26Q17RF5 130 aa7.87□□□□□ -1.15
LDB3-207ENST00000542786 HSPG2P98160 4391 aa7.86□□□□□ -1.15
LDB3-207ENST00000542786 Q5VSD8 79 aa7.83□□□□□ -1.16
LDB3-207ENST00000542786 IGKV2-30P06310 120 aa7.82□□□□□ -1.16
LDB3-207ENST00000542786 KRTAP10-8P60410 259 aa7.81□□□□□ -1.16
LDB3-207ENST00000542786 RETNLBQ9BQ08 111 aa7.81□□□□□ -1.16
LDB3-207ENST00000542786 FLG2Q5D862 2391 aaPredicted RBP7.8□□□□□ -1.16
LDB3-207ENST00000542786 COA5Q86WW8 74 aa7.78□□□□□ -1.16
LDB3-207ENST00000542786 Q8N1X5 172 aa7.78□□□□□ -1.16
LDB3-207ENST00000542786 RYR1P21817 5038 aa7.78□□□□□ -1.16
LDB3-207ENST00000542786 EPPK1P58107 5090 aaKnown RBP7.78□□□□□ -1.16
LDB3-207ENST00000542786 HRES1P13985 223 aa7.75□□□□□ -1.17
LDB3-207ENST00000542786 Q1T7F1 81 aa7.75□□□□□ -1.17
LDB3-207ENST00000542786 MPLKIPQ8TAP9 179 aa7.75□□□□□ -1.17
LDB3-207ENST00000542786 A8MUU9 505 aa7.75□□□□□ -1.17
LDB3-207ENST00000542786 C20orf166-AS1Q96NR2 134 aa7.75□□□□□ -1.17
LDB3-207ENST00000542786 TNXBP22105 4242 aa7.74□□□□□ -1.17
LDB3-207ENST00000542786 LRP1Q07954 4544 aaKnown RBP7.72□□□□□ -1.17
LDB3-207ENST00000542786 C9orf92A6NGG3 77 aa7.71□□□□□ -1.18
LDB3-207ENST00000542786 DMAC1Q96GE9 116 aa7.7□□□□□ -1.18
LDB3-207ENST00000542786 IGKV2D-30A0A075B6S6 120 aa7.68□□□□□ -1.18
LDB3-207ENST00000542786 BIRC6Q9NR09 4857 aa7.68□□□□□ -1.18
LDB3-207ENST00000542786 MT1HL1P0DM35 61 aa7.66□□□□□ -1.18
LDB3-207ENST00000542786 KIAA1109Q2LD37 5005 aa7.66□□□□□ -1.18
LDB3-207ENST00000542786 FAT3Q8TDW7 4589 aa7.66□□□□□ -1.18
LDB3-207ENST00000542786 C7orf65Q6ZTY9 151 aa7.62□□□□□ -1.19
LDB3-207ENST00000542786 V9GYY9 64 aa7.62□□□□□ -1.19
LDB3-207ENST00000542786 ACYP2P14621 99 aa7.62□□□□□ -1.19
LDB3-207ENST00000542786 Q75L30 129 aa7.61□□□□□ -1.19
LDB3-207ENST00000542786 A8MUN3 132 aa7.58□□□□□ -1.2
LDB3-207ENST00000542786 PSPHP1O15172 72 aa7.58□□□□□ -1.2
LDB3-207ENST00000542786 Q5VV11 94 aa7.56□□□□□ -1.2
LDB3-207ENST00000542786 LINC01558Q9Y6Z2 57 aa7.55□□□□□ -1.2
LDB3-207ENST00000542786 DMBT1Q9UGM3 2413 aaPredicted RBP7.55□□□□□ -1.2
LDB3-207ENST00000542786 HERC2O95714 4834 aa7.54□□□□□ -1.2
LDB3-207ENST00000542786 SVIPQ8NHG7 77 aa7.53□□□□□ -1.2
LDB3-207ENST00000542786 MYCBP2O75592 4640 aa7.52□□□□□ -1.21
LDB3-207ENST00000542786 PRR15LQ9BU68 103 aa7.51□□□□□ -1.21
LDB3-207ENST00000542786 KRTAP4-5Q9BYR2 181 aa7.51□□□□□ -1.21
LDB3-207ENST00000542786 SPINK7P58062 85 aa7.5□□□□□ -1.21
LDB3-207ENST00000542786 RPL37P61927 97 aaKnown RBP7.48□□□□□ -1.21
LDB3-207ENST00000542786 XP32Q5T750 250 aa7.48□□□□□ -1.21
LDB3-207ENST00000542786 KRTAP3-1Q9BYR8 98 aa7.48□□□□□ -1.21
LDB3-207ENST00000542786 CHKB-CPT1BH3BT56 60 aa7.47□□□□□ -1.21
LDB3-207ENST00000542786 PRO0628Q9UI54 55 aa7.45□□□□□ -1.22
LDB3-207ENST00000542786 BRK1Q8WUW1 75 aa7.45□□□□□ -1.22
LDB3-207ENST00000542786 ATP11AUNQ6ZP68 121 aa7.4□□□□□ -1.23
LDB3-207ENST00000542786 COX6B2Q6YFQ2 88 aa7.36□□□□□ -1.23
LDB3-207ENST00000542786 A8MU10 97 aa7.35□□□□□ -1.23
LDB3-207ENST00000542786 TPRXLQ17RH7 258 aa7.35□□□□□ -1.23
LDB3-207ENST00000542786 ABCA13Q86UQ4 5058 aa7.35□□□□□ -1.23
LDB3-207ENST00000542786 LCA10Q71F78 164 aa7.32□□□□□ -1.24
LDB3-207ENST00000542786 A6NED7 52 aa7.3□□□□□ -1.24
LDB3-207ENST00000542786 A0A1B0GU69 56 aa7.28□□□□□ -1.24
LDB3-207ENST00000542786 CDC42SE1Q9NRR8 79 aa7.26□□□□□ -1.25
LDB3-207ENST00000542786 SPTSSBQ8NFR3 76 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms